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For: Datta S, Budhauliya R, Das B, Chatterjee S, Vanlalhmuaka, Veer V. Next-generation sequencing in clinical virology: Discovery of new viruses. World J Virology 2015; 4(3): 265-276 [PMID: 26279987 DOI: 10.5501/wjv.v4.i3.265]
URL: https://www.wjgnet.com/2220-3249/full/v4/i3/265.htm
Number Citing Articles
Turner A. Conrad, Chien-Chi Lo, Jeffrey W. Koehler, Amanda S. Graham, Christopher P. Stefan, Adrienne T. Hall, Christina E. Douglas, Patrick S. Chain, Timothy D. Minogue. Diagnostic targETEd seQuencing adjudicaTion (DETEQT)The Journal of Molecular Diagnostics 2019; 21(1): 99 doi: 10.1016/j.jmoldx.2018.08.008
Susanna K. Tan, David A. Relman, Benjamin A. Pinsky, Colleen Suzanne Kraft. The Human Virome: Implications for Clinical Practice in Transplantation MedicineJournal of Clinical Microbiology 2017; 55(10): 2884 doi: 10.1128/JCM.00489-17
G. Maciel-Vergara, A.B. Jensen, A. Lecocq, J. Eilenberg. Diseases in edible insect rearing systemsJournal of Insects as Food and Feed 2021; 7(5): 621 doi: 10.3920/JIFF2021.0024
Michele Araújo Pereira, Frederico Scott Varella Malta, Maíra Cristina Menezes Freire, Patrícia Gonçalves Pereira Couto. Applications of RNA-Seq and Omics Strategies - From Microorganisms to Human Health2017;  doi: 10.5772/intechopen.69337
Hany K. Soliman, Mohamed Abouelhoda, Mahmoud N. El Rouby, Ola S. Ahmed, G. Esmat, Zeinab K. Hassan, Mohammed M. Hafez, Dina Ahmed Mehaney, Manojkumar Selvaraju, Rania Kamal Darwish, Yehia A. Osman, Abdel-Rahman N. Zekri. Whole-genome sequencing of human Pegivirus variant from an Egyptian patient co-infected with hepatitis C virus: a case reportVirology Journal 2019; 16(1) doi: 10.1186/s12985-019-1242-5
Juan Ledesma, David Williams, Felicia Adelina Stanford, Patricia E. Hewitt, Mark Zuckerman, Sanjay Bansal, Anil Dhawan, Jean Lutamyo Mbisa, Richard Tedder, Samreen Ijaz. Resolution by deep sequencing of a dual hepatitis E virus infection transmitted via blood components Journal of General Virology 2019; 100(11): 1491 doi: 10.1099/jgv.0.001302
Matheus Augusto Calvano Cosentino, Mirela D’arc, Filipe Romero Rebello Moreira, Liliane Tavares de Faria Cavalcante, Ricardo Mouta, Amanda Coimbra, Francine Bittencourt Schiffler, Thamiris dos Santos Miranda, Gabriel Medeiros, Cecilia A. Dias, Antonizete R. Souza, Maria Clotilde Henriques Tavares, Amilcar Tanuri, Marcelo Alves Soares, André Felipe Andrade dos Santos. Discovery of two novel Torque Teno viruses in Callithrix penicillata provides insights on Anelloviridae diversification dynamicsFrontiers in Microbiology 2022; 13 doi: 10.3389/fmicb.2022.1002963
Noé Escobar-Escamilla, José Ernesto Ramírez-González, Graciela Castro-Escarpulli, José Alberto Díaz-Quiñonez. Utility of high-throughput DNA sequencing in the study of the human papillomavirusesVirus Genes 2018; 54(1): 17 doi: 10.1007/s11262-017-1530-3
Krithika Bhuvaneshwar, Lei Song, Subha Madhavan, Yuriy Gusev. viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human TumorsFrontiers in Microbiology 2018; 9 doi: 10.3389/fmicb.2018.01172
Michael D. Gallagher, Iveta Matejusova, Lien Nguyen, Neil M. Ruane, Knut Falk, Daniel J. Macqueen. Nanopore sequencing for rapid diagnostics of salmonid RNA virusesScientific Reports 2018; 8(1) doi: 10.1038/s41598-018-34464-x
Kathrin Näpflin, Emily A. O’Connor, Lutz Becks, Staffan Bensch, Vincenzo A. Ellis, Nina Hafer-Hahmann, Karin C. Harding, Sara K. Lindén, Morten T. Olsen, Jacob Roved, Timothy B. Sackton, Allison J. Shultz, Vignesh Venkatakrishnan, Elin Videvall, Helena Westerdahl, Jamie C. Winternitz, Scott V. Edwards. Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scalesPeerJ 2019; 7: e8013 doi: 10.7717/peerj.8013
Jasmin Nicole Nessler, Wendy Karen Jo, Albert D. M. E. Osterhaus, Martin Ludlow, Andrea Tipold. Canine Meningoencephalitis of Unknown Origin—The Search for Infectious Agents in the Cerebrospinal Fluid via Deep SequencingFrontiers in Veterinary Science 2021; 8 doi: 10.3389/fvets.2021.645517
P. Andersen, S. Barksdale, R.A. Barclay, N. Smith, J. Fernandes, K. Besse, D. Goldfarb, R. Barbero, R. Dunlap, T. Jones-Roe, R. Kelly, S. Miao, C. Ruhunusiri, A. Munns, S. Mosavi, L. Sanson, D. Munns, S. Sahoo, O. Swahn, K. Hull, D. White, K. Kolb, F. Noroozi, J. Seelam, A. Patnaik, B. Lepene. Magnetic hydrogel particles improve nanopore sequencing of SARS-CoV-2 and other respiratory virusesScientific Reports 2023; 13(1) doi: 10.1038/s41598-023-29206-7
Mosquito-Specific Viruses—Transmission and InteractionViruses 2019; 11(9): 873 doi: 10.3390/v11090873
Carl A. Gagnon, Christian Lalonde, Chantale Provost. Porcine reproductive and respiratory syndrome virus whole-genome sequencing efficacy with field clinical samples using a poly(A)-tail viral genome purification methodJournal of Veterinary Diagnostic Investigation 2021; 33(2): 216 doi: 10.1177/1040638720952411
Annika Brinkmann, Andreas Nitsche, Claudia Kohl. Viral Metagenomics on Blood-Feeding Arthropods as a Tool for Human Disease SurveillanceInternational Journal of Molecular Sciences 2016; 17(10): 1743 doi: 10.3390/ijms17101743
Zhi-Luo Deng, Akshay Dhingra, Adrian Fritz, Jasper Götting, Philipp C Münch, Lars Steinbrück, Thomas F Schulz, Tina Ganzenmüller, Alice C McHardy. Evaluating assembly and variant calling software for strain-resolved analysis of large DNA virusesBriefings in Bioinformatics 2021; 22(3) doi: 10.1093/bib/bbaa123
Neta S. Zuckerman, Lester M. Shulman. Encyclopedia of Sustainability Science and Technology2020; : 1 doi: 10.1007/978-1-4939-2493-6_1090-1
Rémi La Polla, Abdelghafar Goumaidi, Maïlys Daniau, Catherine Legras-Lachuer, Blandine De Saint-Vis. NGS method by library enrichment for rapid pestivirus purity testing in biologicsVaccine 2023; 41(3): 855 doi: 10.1016/j.vaccine.2022.12.040
Yeonhwa Jo, Hoseong Choi, Won K. Cho. Genome Sequence of Dengue virus 3 from the Pythium insidiosum TranscriptomesFrontiers in Microbiology 2016; 7 doi: 10.3389/fmicb.2016.00926
Sina Zoghi, Mohammad Sadegh Masoudi, Reza Taheri. The Evolving Role of Next-Generation Sequencing in Pediatric Neurosurgery: A Call for Action for Research, Clinical Practice, and Optimization of CareWorld Neurosurgery 2022; 168: 232 doi: 10.1016/j.wneu.2022.09.056
D. Tsakogiannis, C. Gartzonika, S. Levidiotou-Stefanou, P. Markoulatos. Molecular approaches for HPV genotyping and HPV-DNA physical statusExpert Reviews in Molecular Medicine 2017; 19 doi: 10.1017/erm.2017.2
Shahideh Nouri, Emilyn E Matsumura, Yen-Wen Kuo, Bryce W Falk. Insect-specific viruses: from discovery to potential translational applicationsCurrent Opinion in Virology 2018; 33: 33 doi: 10.1016/j.coviro.2018.07.006
Neta S. Zuckerman, Lester M. Shulman. Infectious DiseasesEncyclopedia of Sustainability Science and Technology Series 2023; : 35 doi: 10.1007/978-1-0716-2463-0_1090
Sibnarayan Datta. Encyclopedia of Virology2021; : 27 doi: 10.1016/B978-0-12-814515-9.00124-7
Daniel Kiselev, Alina Matsvay, Ivan Abramov, Vladimir Dedkov, German Shipulin, Kamil Khafizov. Current Trends in Diagnostics of Viral Infections of Unknown EtiologyViruses 2020; 12(2): 211 doi: 10.3390/v12020211
Naveen Kumar, Sanjay Barua, Riyesh Thachamvally, Bhupendra Nath Tripathi. Systems Perspective of Morbillivirus ReplicationMicrobial Physiology 2016; 26(6): 389 doi: 10.1159/000448842
Yuening Li. The Undefinable Links: Unraveling the Mysterious Relationships Between Viruses and the HumanHighlights in Science, Engineering and Technology 2023; 54: 397 doi: 10.54097/hset.v54i.9800
Anna Y. Budkina, Elena V. Korneenko, Ivan A. Kotov, Daniil A. Kiselev, Ilya V. Artyushin, Anna S. Speranskaya, Kamil Khafizov, Vasily G. Akimkin. Utilizing the VirIdAl Pipeline to Search for Viruses in the Metagenomic Data of Bat SamplesViruses 2021; 13(10): 2006 doi: 10.3390/v13102006
Claudio Soto-Garita, Jean-Paul Carrera, Sandra López-Vergès, Eugenia Corrales-Aguilar. Advances in Clinical Diagnosis and Management of Chikungunya Virus InfectionCurrent Treatment Options in Infectious Diseases 2018; 10(3): 397 doi: 10.1007/s40506-018-0172-x
Mateusz Kudla, Kaja Gutowska, Jaroslaw Synak, Mirko Weber, Katrin Sophie Bohnsack, Piotr Lukasiak, Thomas Villmann, Jacek Blazewicz, Marta Szachniuk, Zhiyong Lu. Virxicon: a lexicon of viral sequencesBioinformatics 2021; 36(22-23): 5507 doi: 10.1093/bioinformatics/btaa1066
Alicia B. Mitchell, Brian G. G. Oliver, Allan R. Glanville. Translational Aspects of the Human Respiratory ViromeAmerican Journal of Respiratory and Critical Care Medicine 2016; 194(12): 1458 doi: 10.1164/rccm.201606-1278CI
Clara Galan-Navarro, Marcela Rincon-Restrepo, Gert Zimmer, Erica Ollmann Saphire, Jeffrey A. Hubbell, Sachiko Hirosue, Melody A. Swartz, Stefan Kunz. Oxidation-sensitive polymersomes as vaccine nanocarriers enhance humoral responses against Lassa virus envelope glycoproteinVirology 2017; 512: 161 doi: 10.1016/j.virol.2017.09.013
Yu-Hua Qi, Zhuang-Xin Ye, Chuan-Xi Zhang, Jian-Ping Chen, Jun-Min Li. Diversity of RNA viruses in agricultural insectsComputational and Structural Biotechnology Journal 2023; 21: 4312 doi: 10.1016/j.csbj.2023.08.036
Andriniaina Andy Nkili-Meyong, Laurent Bigarré, Ingrid Labouba, Tatiana Vallaeys, Jean-Christophe Avarre, Nicolas Berthet. Contribution of Next-Generation Sequencing to Aquatic and Fish VirologyIntervirology 2016; 59(5-6): 285 doi: 10.1159/000477808
Ashish Kumar Vyas, Sudheer Gupta. Integrated Omics Approaches to Infectious Diseases2021; : 81 doi: 10.1007/978-981-16-0691-5_5
Selene Zárate, Blanca Taboada, Martha Yocupicio-Monroy, Carlos F. Arias. Human ViromeArchives of Medical Research 2017; 48(8): 701 doi: 10.1016/j.arcmed.2018.01.005
Eszter Kaszab, Andor Doszpoly, Gianvito Lanave, Atul Verma, Krisztián Bányai, Yashpal Singh Malik, Szilvia Marton. Genomics and Biotechnological Advances in Veterinary, Poultry, and Fisheries2020; : 29 doi: 10.1016/B978-0-12-816352-8.00002-3
Suha A. Farraj, Shreif A. El-Kafrawy, Taha A. Kumosani, Jehad M. Yousef, Esam I. Azhar. Evaluation of Extraction Methods for Clinical Metagenomic AssayMicroorganisms 2020; 8(8): 1128 doi: 10.3390/microorganisms8081128
Francisco Rodríguez-Frías, Josep Quer, David Tabernero, Maria Francesca Cortese, Selene Garcia-Garcia, Ariadna Rando-Segura, Tomas Pumarola. Microorganisms as Shapers of Human Civilization, from Pandemics to Even Our Genomes: Villains or Friends? A Historical ApproachMicroorganisms 2021; 9(12): 2518 doi: 10.3390/microorganisms9122518
Govind Singh Saharan, Naresh K. Mehta, Prabhu Dayal Meena. Genomics of Crucifer's Host- Pathosystem2023; : 503 doi: 10.1007/978-981-19-3812-2_4
Natali Ludowyke, Worakorn Phumiphanjarphak, Nopporn Apiwattanakul, Suwimon Manopwisedjaroen, Samart Pakakasama, Insee Sensorn, Ekawat Pasomsub, Wasun Chantratita, Suradej Hongeng, Pakorn Aiewsakun, Arunee Thitithanyanont. Target Enrichment Metagenomics Reveals Human Pegivirus-1 in Pediatric Hematopoietic Stem Cell Transplantation RecipientsViruses 2022; 14(4): 796 doi: 10.3390/v14040796
Ricardo Parreira, Lee W. Riley, Ronald E. Blanton. Laboratory Methods in Molecular Epidemiology: Viral InfectionsMicrobiology Spectrum 2018; 6(6) doi: 10.1128/microbiolspec.AME-0003-2018
Asha Rani, Ravi Ranjan, Halvor S. McGee, Ahmed Metwally, Zahraa Hajjiri, Daniel C. Brennan, Patricia W. Finn, David L. Perkins. A diverse virome in kidney transplant patients contains multiple viral subtypes with distinct polymorphismsScientific Reports 2016; 6(1) doi: 10.1038/srep33327
Jitka Koblihova, Klara Srutova, Monika Krutska, Hana Klamova, Katerina Machova Polakova, Ruslan Kalendar. AFLP-AFLP in silico-NGS approach reveals polymorphisms in repetitive elements in the malignant genomePLOS ONE 2018; 13(11): e0206620 doi: 10.1371/journal.pone.0206620
Fatemeh Farhangdoust, Mohammad Amin Alibakshi, Feng Cheng, Wentao Liang, Yongmin Liu, Meni Wanunu. Rapid Identification of DNA Fragments through Direct Sequencing with Electro‐Optical Zero‐Mode WaveguidesAdvanced Materials 2022; 34(9) doi: 10.1002/adma.202108479
Tobias P Loka, Simon H Tausch, Piotr W Dabrowski, Aleksandar Radonić, Andreas Nitsche, Bernhard Y Renard, Inanc Birol. PriLive: privacy-preserving real-time filtering for next-generation sequencingBioinformatics 2018; 34(14): 2376 doi: 10.1093/bioinformatics/bty128
Beatrice Aramini, Valentina Masciale, Anna Valeria Samarelli, Roberto Tonelli, Stefania Cerri, Enrico Clini, Franco Stella, Massimo Dominici. Biological effects of COVID-19 on lung cancer: Can we drive our decisionsFrontiers in Oncology 2022; 12 doi: 10.3389/fonc.2022.1029830
Rémi La Polla, Abdelghafar Goumaidi, Maïlys Daniau, Catherine Legras-Lachuer, Blandine De Saint-Vis. 2022;  doi: 10.2139/ssrn.4090493
Anuja Jain, Shikha Mittal, Lokesh P. Tripathi, Ruth Nussinov, Shandar Ahmad. Host-pathogen protein-nucleic acid interactions: A comprehensive reviewComputational and Structural Biotechnology Journal 2022; 20: 4415 doi: 10.1016/j.csbj.2022.08.001
Kathy Toohey-Kurth, Samuel D. Sibley, Tony L. Goldberg. Metagenomic assessment of adventitious viruses in commercial bovine seraBiologicals 2017; 47: 64 doi: 10.1016/j.biologicals.2016.10.009
I-Na Lu, Claude P. Muller, Feng Q. He. Applying next-generation sequencing to unravel the mutational landscape in viral quasispeciesVirus Research 2020; 283: 197963 doi: 10.1016/j.virusres.2020.197963
Siemon Ng, Cassandra Braxton, Marc Eloit, Szi Feng, Romain Fragnoud, Laurent Mallet, Edward Mee, Sarmitha Sathiamoorthy, Olivier Vandeputte, Arifa Khan. Current Perspectives on High-Throughput Sequencing (HTS) for Adventitious Virus Detection: Upstream Sample Processing and Library PreparationViruses 2018; 10(10): 566 doi: 10.3390/v10100566
Rebecca P. Wilkes. Next-Generation Diagnostics for PathogensVeterinary Clinics of North America: Food Animal Practice 2023; 39(1): 165 doi: 10.1016/j.cvfa.2022.09.003
Marthi Pretorius, Marietjie Venter. Viral Infections in Children, Volume I2017; : 151 doi: 10.1007/978-3-319-54033-7_6
Liting Song, Wenxun Huang, Juan Kang, Yuan Huang, Hong Ren, Keyue Ding. Comparison of error correction algorithms for Ion Torrent PGM data: application to hepatitis B virusScientific Reports 2017; 7(1) doi: 10.1038/s41598-017-08139-y
Yin-Ting Yeh, Kristen Gulino, YuHe Zhang, Aswathy Sabestien, Tsui-Wen Chou, Bin Zhou, Zhong Lin, Istvan Albert, Huaguang Lu, Venkataraman Swaminathan, Elodie Ghedin, Mauricio Terrones. A rapid and label-free platform for virus capture and identification from clinical samplesProceedings of the National Academy of Sciences 2020; 117(2): 895 doi: 10.1073/pnas.1910113117
Di Wang, Jin-Quan Wang, Xiao-Gen Tao. Fatal visceral disseminated varicella-zoster virus infection in a renal transplant recipient: A case reportWorld Journal of Clinical Cases 2021; 9(30): 9168-9173 doi: 10.12998/wjcc.v9.i30.9168
Renee M. Barber, Qiang Li, Jonathan M. Levine, Susan J. Ruone, Gwendolyn J. Levine, Patrick Kenny, Suxiang Tong, Scott J. Schatzberg. Screening for Viral Nucleic Acids in the Cerebrospinal Fluid of Dogs With Central Nervous System InflammationFrontiers in Veterinary Science 2022; 9 doi: 10.3389/fvets.2022.850510
Jianqiang Zhang, Kyoung‐Jin Yoon, Jeffrey J. Zimmerman. Diseases of Swine2019; : 425 doi: 10.1002/9781119350927.ch23
Andreas Andrusch, Piotr W Dabrowski, Jeanette Klenner, Simon H Tausch, Claudia Kohl, Abdalla A Osman, Bernhard Y Renard, Andreas Nitsche. PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samplesBioinformatics 2018; 34(17): i715 doi: 10.1093/bioinformatics/bty595
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