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Aug 12, 2015 (publication date) through Apr 23, 2024
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World Journal of Virology
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2220-3249
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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA
| For: | Datta S, Budhauliya R, Das B, Chatterjee S, Vanlalhmuaka, Veer V. Next-generation sequencing in clinical virology: Discovery of new viruses. World J Virology 2015; 4(3): 265-276 [PMID: 26279987 DOI: 10.5501/wjv.v4.i3.265] |
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| URL: | https://www.wjgnet.com/2220-3249/full/v4/i3/265.htm |
| Number | Citing Articles |
| 1 |
Turner A. Conrad, Chien-Chi Lo, Jeffrey W. Koehler, Amanda S. Graham, Christopher P. Stefan, Adrienne T. Hall, Christina E. Douglas, Patrick S. Chain, Timothy D. Minogue. Diagnostic targETEd seQuencing adjudicaTion (DETEQT). The Journal of Molecular Diagnostics 2019; 21(1): 99 doi: 10.1016/j.jmoldx.2018.08.008
|
| 2 |
Susanna K. Tan, David A. Relman, Benjamin A. Pinsky, Colleen Suzanne Kraft. The Human Virome: Implications for Clinical Practice in Transplantation Medicine. Journal of Clinical Microbiology 2017; 55(10): 2884 doi: 10.1128/JCM.00489-17
|
| 3 |
G. Maciel-Vergara, A.B. Jensen, A. Lecocq, J. Eilenberg. Diseases in edible insect rearing systems. Journal of Insects as Food and Feed 2021; 7(5): 621 doi: 10.3920/JIFF2021.0024
|
| 4 |
Michele Araújo Pereira, Frederico Scott Varella Malta, Maíra Cristina Menezes Freire, Patrícia Gonçalves Pereira Couto. Applications of RNA-Seq and Omics Strategies - From Microorganisms to Human Health. 2017; doi: 10.5772/intechopen.69337
|
| 5 |
Hany K. Soliman, Mohamed Abouelhoda, Mahmoud N. El Rouby, Ola S. Ahmed, G. Esmat, Zeinab K. Hassan, Mohammed M. Hafez, Dina Ahmed Mehaney, Manojkumar Selvaraju, Rania Kamal Darwish, Yehia A. Osman, Abdel-Rahman N. Zekri. Whole-genome sequencing of human Pegivirus variant from an Egyptian patient co-infected with hepatitis C virus: a case report. Virology Journal 2019; 16(1) doi: 10.1186/s12985-019-1242-5
|
| 6 |
Juan Ledesma, David Williams, Felicia Adelina Stanford, Patricia E. Hewitt, Mark Zuckerman, Sanjay Bansal, Anil Dhawan, Jean Lutamyo Mbisa, Richard Tedder, Samreen Ijaz. Resolution by deep sequencing of a dual hepatitis E virus infection transmitted via blood components.
Journal of General Virology
2019; 100(11): 1491 doi: 10.1099/jgv.0.001302
|
| 7 |
Matheus Augusto Calvano Cosentino, Mirela D’arc, Filipe Romero Rebello Moreira, Liliane Tavares de Faria Cavalcante, Ricardo Mouta, Amanda Coimbra, Francine Bittencourt Schiffler, Thamiris dos Santos Miranda, Gabriel Medeiros, Cecilia A. Dias, Antonizete R. Souza, Maria Clotilde Henriques Tavares, Amilcar Tanuri, Marcelo Alves Soares, André Felipe Andrade dos Santos. Discovery of two novel Torque Teno viruses in Callithrix penicillata provides insights on Anelloviridae diversification dynamics. Frontiers in Microbiology 2022; 13 doi: 10.3389/fmicb.2022.1002963
|
| 8 |
Noé Escobar-Escamilla, José Ernesto Ramírez-González, Graciela Castro-Escarpulli, José Alberto Díaz-Quiñonez. Utility of high-throughput DNA sequencing in the study of the human papillomaviruses. Virus Genes 2018; 54(1): 17 doi: 10.1007/s11262-017-1530-3
|
| 9 |
Krithika Bhuvaneshwar, Lei Song, Subha Madhavan, Yuriy Gusev. viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human Tumors. Frontiers in Microbiology 2018; 9 doi: 10.3389/fmicb.2018.01172
|
| 10 |
Michael D. Gallagher, Iveta Matejusova, Lien Nguyen, Neil M. Ruane, Knut Falk, Daniel J. Macqueen. Nanopore sequencing for rapid diagnostics of salmonid RNA viruses. Scientific Reports 2018; 8(1) doi: 10.1038/s41598-018-34464-x
|
| 11 |
Kathrin Näpflin, Emily A. O’Connor, Lutz Becks, Staffan Bensch, Vincenzo A. Ellis, Nina Hafer-Hahmann, Karin C. Harding, Sara K. Lindén, Morten T. Olsen, Jacob Roved, Timothy B. Sackton, Allison J. Shultz, Vignesh Venkatakrishnan, Elin Videvall, Helena Westerdahl, Jamie C. Winternitz, Scott V. Edwards. Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales. PeerJ 2019; 7: e8013 doi: 10.7717/peerj.8013
|
| 12 |
Jasmin Nicole Nessler, Wendy Karen Jo, Albert D. M. E. Osterhaus, Martin Ludlow, Andrea Tipold. Canine Meningoencephalitis of Unknown Origin—The Search for Infectious Agents in the Cerebrospinal Fluid via Deep Sequencing. Frontiers in Veterinary Science 2021; 8 doi: 10.3389/fvets.2021.645517
|
| 13 |
P. Andersen, S. Barksdale, R.A. Barclay, N. Smith, J. Fernandes, K. Besse, D. Goldfarb, R. Barbero, R. Dunlap, T. Jones-Roe, R. Kelly, S. Miao, C. Ruhunusiri, A. Munns, S. Mosavi, L. Sanson, D. Munns, S. Sahoo, O. Swahn, K. Hull, D. White, K. Kolb, F. Noroozi, J. Seelam, A. Patnaik, B. Lepene. Magnetic hydrogel particles improve nanopore sequencing of SARS-CoV-2 and other respiratory viruses. Scientific Reports 2023; 13(1) doi: 10.1038/s41598-023-29206-7
|
| 14 |
Mosquito-Specific Viruses—Transmission and Interaction. Viruses 2019; 11(9): 873 doi: 10.3390/v11090873
|
| 15 |
Carl A. Gagnon, Christian Lalonde, Chantale Provost. Porcine reproductive and respiratory syndrome virus whole-genome sequencing efficacy with field clinical samples using a poly(A)-tail viral genome purification method. Journal of Veterinary Diagnostic Investigation 2021; 33(2): 216 doi: 10.1177/1040638720952411
|
| 16 |
Annika Brinkmann, Andreas Nitsche, Claudia Kohl. Viral Metagenomics on Blood-Feeding Arthropods as a Tool for Human Disease Surveillance. International Journal of Molecular Sciences 2016; 17(10): 1743 doi: 10.3390/ijms17101743
|
| 17 |
Zhi-Luo Deng, Akshay Dhingra, Adrian Fritz, Jasper Götting, Philipp C Münch, Lars Steinbrück, Thomas F Schulz, Tina Ganzenmüller, Alice C McHardy. Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses. Briefings in Bioinformatics 2021; 22(3) doi: 10.1093/bib/bbaa123
|
| 18 |
Neta S. Zuckerman, Lester M. Shulman. Encyclopedia of Sustainability Science and Technology. 2020; : 1 doi: 10.1007/978-1-4939-2493-6_1090-1
|
| 19 |
Rémi La Polla, Abdelghafar Goumaidi, Maïlys Daniau, Catherine Legras-Lachuer, Blandine De Saint-Vis. NGS method by library enrichment for rapid pestivirus purity testing in biologics. Vaccine 2023; 41(3): 855 doi: 10.1016/j.vaccine.2022.12.040
|
| 20 |
Yeonhwa Jo, Hoseong Choi, Won K. Cho. Genome Sequence of Dengue virus 3 from the Pythium insidiosum Transcriptomes. Frontiers in Microbiology 2016; 7 doi: 10.3389/fmicb.2016.00926
|
| 21 |
Sina Zoghi, Mohammad Sadegh Masoudi, Reza Taheri. The Evolving Role of Next-Generation Sequencing in Pediatric Neurosurgery: A Call for Action for Research, Clinical Practice, and Optimization of Care. World Neurosurgery 2022; 168: 232 doi: 10.1016/j.wneu.2022.09.056
|
| 22 |
D. Tsakogiannis, C. Gartzonika, S. Levidiotou-Stefanou, P. Markoulatos. Molecular approaches for HPV genotyping and HPV-DNA physical status. Expert Reviews in Molecular Medicine 2017; 19 doi: 10.1017/erm.2017.2
|
| 23 |
Shahideh Nouri, Emilyn E Matsumura, Yen-Wen Kuo, Bryce W Falk. Insect-specific viruses: from discovery to potential translational applications. Current Opinion in Virology 2018; 33: 33 doi: 10.1016/j.coviro.2018.07.006
|
| 24 |
Neta S. Zuckerman, Lester M. Shulman. Infectious Diseases. Encyclopedia of Sustainability Science and Technology Series 2023; : 35 doi: 10.1007/978-1-0716-2463-0_1090
|
| 25 |
|
| 26 |
Daniel Kiselev, Alina Matsvay, Ivan Abramov, Vladimir Dedkov, German Shipulin, Kamil Khafizov. Current Trends in Diagnostics of Viral Infections of Unknown Etiology. Viruses 2020; 12(2): 211 doi: 10.3390/v12020211
|
| 27 |
Naveen Kumar, Sanjay Barua, Riyesh Thachamvally, Bhupendra Nath Tripathi. Systems Perspective of Morbillivirus Replication. Microbial Physiology 2016; 26(6): 389 doi: 10.1159/000448842
|
| 28 |
Yuening Li. The Undefinable Links: Unraveling the Mysterious Relationships Between Viruses and the Human. Highlights in Science, Engineering and Technology 2023; 54: 397 doi: 10.54097/hset.v54i.9800
|
| 29 |
Anna Y. Budkina, Elena V. Korneenko, Ivan A. Kotov, Daniil A. Kiselev, Ilya V. Artyushin, Anna S. Speranskaya, Kamil Khafizov, Vasily G. Akimkin. Utilizing the VirIdAl Pipeline to Search for Viruses in the Metagenomic Data of Bat Samples. Viruses 2021; 13(10): 2006 doi: 10.3390/v13102006
|
| 30 |
Claudio Soto-Garita, Jean-Paul Carrera, Sandra López-Vergès, Eugenia Corrales-Aguilar. Advances in Clinical Diagnosis and Management of Chikungunya Virus Infection. Current Treatment Options in Infectious Diseases 2018; 10(3): 397 doi: 10.1007/s40506-018-0172-x
|
| 31 |
Mateusz Kudla, Kaja Gutowska, Jaroslaw Synak, Mirko Weber, Katrin Sophie Bohnsack, Piotr Lukasiak, Thomas Villmann, Jacek Blazewicz, Marta Szachniuk, Zhiyong Lu. Virxicon: a lexicon of viral sequences. Bioinformatics 2021; 36(22-23): 5507 doi: 10.1093/bioinformatics/btaa1066
|
| 32 |
Alicia B. Mitchell, Brian G. G. Oliver, Allan R. Glanville. Translational Aspects of the Human Respiratory Virome. American Journal of Respiratory and Critical Care Medicine 2016; 194(12): 1458 doi: 10.1164/rccm.201606-1278CI
|
| 33 |
Clara Galan-Navarro, Marcela Rincon-Restrepo, Gert Zimmer, Erica Ollmann Saphire, Jeffrey A. Hubbell, Sachiko Hirosue, Melody A. Swartz, Stefan Kunz. Oxidation-sensitive polymersomes as vaccine nanocarriers enhance humoral responses against Lassa virus envelope glycoprotein. Virology 2017; 512: 161 doi: 10.1016/j.virol.2017.09.013
|
| 34 |
Yu-Hua Qi, Zhuang-Xin Ye, Chuan-Xi Zhang, Jian-Ping Chen, Jun-Min Li. Diversity of RNA viruses in agricultural insects. Computational and Structural Biotechnology Journal 2023; 21: 4312 doi: 10.1016/j.csbj.2023.08.036
|
| 35 |
Andriniaina Andy Nkili-Meyong, Laurent Bigarré, Ingrid Labouba, Tatiana Vallaeys, Jean-Christophe Avarre, Nicolas Berthet. Contribution of Next-Generation Sequencing to Aquatic and Fish Virology. Intervirology 2016; 59(5-6): 285 doi: 10.1159/000477808
|
| 36 |
Ashish Kumar Vyas, Sudheer Gupta. Integrated Omics Approaches to Infectious Diseases. 2021; : 81 doi: 10.1007/978-981-16-0691-5_5
|
| 37 |
Luis Janssen Maia, Cirilo Henrique de Oliveira, Arthur Batista Silva, Pedro Augusto Almeida Souza, Nicolas Felipe Drumm Müller, Jader da Cruz Cardoso, Bergmann Morais Ribeiro, Filipe Vieira Santos de Abreu, Fabrício Souza Campos. Arbovirus surveillance in mosquitoes: Historical methods, emerging technologies, and challenges ahead. Experimental Biology and Medicine 2023; 248(22): 2072 doi: 10.1177/15353702231209415
|
| 38 |
Selene Zárate, Blanca Taboada, Martha Yocupicio-Monroy, Carlos F. Arias. Human Virome. Archives of Medical Research 2017; 48(8): 701 doi: 10.1016/j.arcmed.2018.01.005
|
| 39 |
Eszter Kaszab, Andor Doszpoly, Gianvito Lanave, Atul Verma, Krisztián Bányai, Yashpal Singh Malik, Szilvia Marton. Genomics and Biotechnological Advances in Veterinary, Poultry, and Fisheries. 2020; : 29 doi: 10.1016/B978-0-12-816352-8.00002-3
|
| 40 |
Suha A. Farraj, Shreif A. El-Kafrawy, Taha A. Kumosani, Jehad M. Yousef, Esam I. Azhar. Evaluation of Extraction Methods for Clinical Metagenomic Assay. Microorganisms 2020; 8(8): 1128 doi: 10.3390/microorganisms8081128
|
| 41 |
Francisco Rodríguez-Frías, Josep Quer, David Tabernero, Maria Francesca Cortese, Selene Garcia-Garcia, Ariadna Rando-Segura, Tomas Pumarola. Microorganisms as Shapers of Human Civilization, from Pandemics to Even Our Genomes: Villains or Friends? A Historical Approach. Microorganisms 2021; 9(12): 2518 doi: 10.3390/microorganisms9122518
|
| 42 |
Govind Singh Saharan, Naresh K. Mehta, Prabhu Dayal Meena. Genomics of Crucifer's Host- Pathosystem. 2023; : 503 doi: 10.1007/978-981-19-3812-2_4
|
| 43 |
Natali Ludowyke, Worakorn Phumiphanjarphak, Nopporn Apiwattanakul, Suwimon Manopwisedjaroen, Samart Pakakasama, Insee Sensorn, Ekawat Pasomsub, Wasun Chantratita, Suradej Hongeng, Pakorn Aiewsakun, Arunee Thitithanyanont. Target Enrichment Metagenomics Reveals Human Pegivirus-1 in Pediatric Hematopoietic Stem Cell Transplantation Recipients. Viruses 2022; 14(4): 796 doi: 10.3390/v14040796
|
| 44 |
Ricardo Parreira, Lee W. Riley, Ronald E. Blanton. Laboratory Methods in Molecular Epidemiology: Viral Infections. Microbiology Spectrum 2018; 6(6) doi: 10.1128/microbiolspec.AME-0003-2018
|
| 45 |
Asha Rani, Ravi Ranjan, Halvor S. McGee, Ahmed Metwally, Zahraa Hajjiri, Daniel C. Brennan, Patricia W. Finn, David L. Perkins. A diverse virome in kidney transplant patients contains multiple viral subtypes with distinct polymorphisms. Scientific Reports 2016; 6(1) doi: 10.1038/srep33327
|
| 46 |
Jitka Koblihova, Klara Srutova, Monika Krutska, Hana Klamova, Katerina Machova Polakova, Ruslan Kalendar. AFLP-AFLP in silico-NGS approach reveals polymorphisms in repetitive elements in the malignant genome. PLOS ONE 2018; 13(11): e0206620 doi: 10.1371/journal.pone.0206620
|
| 47 |
Fatemeh Farhangdoust, Mohammad Amin Alibakshi, Feng Cheng, Wentao Liang, Yongmin Liu, Meni Wanunu. Rapid Identification of DNA Fragments through Direct Sequencing with Electro‐Optical Zero‐Mode Waveguides. Advanced Materials 2022; 34(9) doi: 10.1002/adma.202108479
|
| 48 |
Tobias P Loka, Simon H Tausch, Piotr W Dabrowski, Aleksandar Radonić, Andreas Nitsche, Bernhard Y Renard, Inanc Birol. PriLive: privacy-preserving real-time filtering for next-generation sequencing. Bioinformatics 2018; 34(14): 2376 doi: 10.1093/bioinformatics/bty128
|
| 49 |
Beatrice Aramini, Valentina Masciale, Anna Valeria Samarelli, Roberto Tonelli, Stefania Cerri, Enrico Clini, Franco Stella, Massimo Dominici. Biological effects of COVID-19 on lung cancer: Can we drive our decisions. Frontiers in Oncology 2022; 12 doi: 10.3389/fonc.2022.1029830
|
| 50 |
Rémi La Polla, Abdelghafar Goumaidi, Maïlys Daniau, Catherine Legras-Lachuer, Blandine De Saint-Vis. . 2022; doi: 10.2139/ssrn.4090493
|
| 51 |
Anuja Jain, Shikha Mittal, Lokesh P. Tripathi, Ruth Nussinov, Shandar Ahmad. Host-pathogen protein-nucleic acid interactions: A comprehensive review. Computational and Structural Biotechnology Journal 2022; 20: 4415 doi: 10.1016/j.csbj.2022.08.001
|
| 52 |
Kathy Toohey-Kurth, Samuel D. Sibley, Tony L. Goldberg. Metagenomic assessment of adventitious viruses in commercial bovine sera. Biologicals 2017; 47: 64 doi: 10.1016/j.biologicals.2016.10.009
|
| 53 |
I-Na Lu, Claude P. Muller, Feng Q. He. Applying next-generation sequencing to unravel the mutational landscape in viral quasispecies. Virus Research 2020; 283: 197963 doi: 10.1016/j.virusres.2020.197963
|
| 54 |
Siemon Ng, Cassandra Braxton, Marc Eloit, Szi Feng, Romain Fragnoud, Laurent Mallet, Edward Mee, Sarmitha Sathiamoorthy, Olivier Vandeputte, Arifa Khan. Current Perspectives on High-Throughput Sequencing (HTS) for Adventitious Virus Detection: Upstream Sample Processing and Library Preparation. Viruses 2018; 10(10): 566 doi: 10.3390/v10100566
|
| 55 |
Rebecca P. Wilkes. Next-Generation Diagnostics for Pathogens. Veterinary Clinics of North America: Food Animal Practice 2023; 39(1): 165 doi: 10.1016/j.cvfa.2022.09.003
|
| 56 |
Marthi Pretorius, Marietjie Venter. Viral Infections in Children, Volume I. 2017; : 151 doi: 10.1007/978-3-319-54033-7_6
|
| 57 |
Liting Song, Wenxun Huang, Juan Kang, Yuan Huang, Hong Ren, Keyue Ding. Comparison of error correction algorithms for Ion Torrent PGM data: application to hepatitis B virus. Scientific Reports 2017; 7(1) doi: 10.1038/s41598-017-08139-y
|
| 58 |
Yin-Ting Yeh, Kristen Gulino, YuHe Zhang, Aswathy Sabestien, Tsui-Wen Chou, Bin Zhou, Zhong Lin, Istvan Albert, Huaguang Lu, Venkataraman Swaminathan, Elodie Ghedin, Mauricio Terrones. A rapid and label-free platform for virus capture and identification from clinical samples. Proceedings of the National Academy of Sciences 2020; 117(2): 895 doi: 10.1073/pnas.1910113117
|
| 59 |
Di Wang, Jin-Quan Wang, Xiao-Gen Tao. Fatal visceral disseminated varicella-zoster virus infection in a renal transplant recipient: A case report. World Journal of Clinical Cases 2021; 9(30): 9168-9173 doi: 10.12998/wjcc.v9.i30.9168
|
| 60 |
Renee M. Barber, Qiang Li, Jonathan M. Levine, Susan J. Ruone, Gwendolyn J. Levine, Patrick Kenny, Suxiang Tong, Scott J. Schatzberg. Screening for Viral Nucleic Acids in the Cerebrospinal Fluid of Dogs With Central Nervous System Inflammation. Frontiers in Veterinary Science 2022; 9 doi: 10.3389/fvets.2022.850510
|
| 61 |
Jianqiang Zhang, Kyoung‐Jin Yoon, Jeffrey J. Zimmerman. Diseases of Swine. 2019; : 425 doi: 10.1002/9781119350927.ch23
|
| 62 |
Andreas Andrusch, Piotr W Dabrowski, Jeanette Klenner, Simon H Tausch, Claudia Kohl, Abdalla A Osman, Bernhard Y Renard, Andreas Nitsche. PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples. Bioinformatics 2018; 34(17): i715 doi: 10.1093/bioinformatics/bty595
|
| 63 |
Caitriona M. Guinane, Michael J. Callanan. Reference Module in Life Sciences. 2018; doi: 10.1016/B978-0-12-809633-8.12123-5
|