Effects of ciglitazone and troglitazone on the proliferation of human stomach cancer cells

Table 2 Biological process of up-regulated genes by triglitazone in SNU-668 cells

Term	Count	Pvalue	Genes
Negative regulation of cellular process	29	2.26E-04	ANGPTL4, ZFHX1B, MXD4, CXCL1, GPNMB, CDKN1A, IRF1, SESN2, JAZF1, FTH1, IL6, SVIL, JARID1B, MN1, DDIT3, PPP1R15A, IER3, ARHGEF2, TNFAIP3, RHOB, PRDM1, QSCN6, BNIP3L, MAP4, NRG1, EREG, FAIM3, IL8, FST
Response to chemical stimulus	20	1.91E-04	CCL20, PLD1, STC2, APOE, DEFB1, PLAU, CXCL1, SEMA3C, SRXN1, CCL5, SOD2, HSPA6, STC1, CXCL2, NDRG1, DNAJB2, IL8, MVP, ECGF1, ARNT2
Chemotaxis	8	0.009882707	CCL20, PLD1, CXCL2, CXCL1, PLAU, IL8, ECGF1, CCL5
Negative regulation of cell proliferation	9	0.009171778	FTH1, IL6, MXD4, EREG, CXCL1, IL8, GPNMB, CDKN1A, QSCN6
Programmed cell death	22	0.002544517	SQSTM1, TNFRSF21, PPP1R15A, APOE, ANGPTL4, IER3, TNFAIP3, RHOB, TNFRSF10A, ROCK1, HIPK2, CDKN1A, BNIP3L, C10orf97, IL6, RRAGC, APP, PHLDA2, RIPK2, FAIM3, IL24, TRIB3
Development	62	9.62E-06	SERPINE2, CXCL1, PHGDH, EPC1, MSX1, IL6, SLC3A2, COL7A1, IFRD1, NAV1, LIF, IER3, ARHGEF2, RHOB, DHRS9, PKD1, VAT1, SEMA3C, QSCN6, ANPEP, LTBP4, EDG3, SOX9, SQSTM1, PTGS2, IGF2BP3, FBN1, DNER, IGFBP5, CTGF, ANGPTL4, APOE, ZFHX1B, CSPG2, IL11, KLF6, RRAGC, S100P, NDRG1, SVIL, PNMA1, DACT1, CYP1B1, WNT5A, MAFB, PDLIM7, LAMA4, CRMP1, PAPPA, CAMTA1, RUNX1, KRTHA4, EREG, GPR56, NRG1, FST, IL8, DCN, ECGF1, ARNT2, NRP1, ITGA2
Organelle organization and biogenesis	28	0.005845300	WASPIP, APOE, HIST1H1C, CXCL1, EPC1, SVIL, MICAL1, H2BFS, HIST2H2AA, FMNL2, TINF2, PLEC1, TUBA1, HIST2H2BE, ARHGEF2, RHOF, ROCK1, TMOD1, HIST1H2BK, RHOB, SLC22A4, FSCN1, HIST1H2BD, ATG4A, KIF1A, MAP4, ECGF1, KLHL5
Inflammatory response	12	0.002509065	CCL20, PTGS2, CXCL2, PLA2G4C, CEBPB, EDG3, CXCL1, RIPK2, IL8, TNFAIP6, IRAK2, CCL5
Organ development	21	0.003134980	FBN1, ANGPTL4, PDLIM7, RHOB, PHGDH, IL11, ANPEP, MSX1, IL6, KLF6, SVIL, EREG, GPR56, SOX9, DCN, IL8, ECGF1, CYP1B1, NRP1, ITGA2, IFRD1
Transcription from RNA polymerase II promoter	17	0.024568720	SQSTM1, TRAK1, TSC22D1, DDIT3, MAFF, MXD4, IRF1, PRDM1, ATBF1, JAZF1, SOD2, FOXF1, NFIL3, RUNX1, STAT5A, CEBPB, SOX9
Cellular morphogenesis	12	0.016732354	KLF6, RRAGC, CTGF, IGFBP5, APOE, LTBP4, ARHGEF2, SLC3A2, VAT1, NRP1, QSCN6, EPC1
Blood vessel morphogenesis	7	0.002345097	ANPEP, ANGPTL4, EREG, RHOB, IL8, ECGF1, NRP1
Response to wounding	20	2.23E-04	CCL20, PTGS2, CTGF, PLA2G4C, PLAU, CXCL1, TNFAIP6, CCL5, SOD2, IL11, CXCL2, CEBPB, EREG, EDG3, RIPK2, FAIM3, IL8, SERPINE1, IRAK2, ITGA2
Apoptosis	22	0.002437855	SQSTM1, TNFRSF21, PPP1R15A, APOE, ANGPTL4, IER3, TNFAIP3, RHOB, TNFRSF10A, ROCK1, HIPK2, CDKN1A, BNIP3L, C10orf97, IL6, RRAGC, APP, PHLDA2, RIPK2, FAIM3, IL24, TRIB3
Cell-cell signaling	24	2.63E-04	CCL20, PBEF1, STC2, APOE, STX1A, LIF, GDF15, MAOA, TNFAIP6, GRB10, CCL5, IL11, STC1, GABARAPL1, IL6, LTBP4, EREG, GPR56, EFNA1, FST, IL8, ECGF1, NRP1, WNT5A
Response to stress	35	0.003636369	SQSTM1, CCL20, PTGS2, ERRFI1, PLA2G4C, CTGF, ANGPTL4, APOE, CXCL1, CD83, SRXN1, TNFAIP6, CCL5, IL11, SOD2, HSPA6, IL6, CD55, CEBPB, DNAJB2, SERPINE1, CFB, PPP1R15A, DDIT3, DEFB1, PLAU, CXCL2, EREG, EDG3, RIPK2, FAIM3, IL8, ARNT2, IRAK2, ITGA2
Vasculature development	7	0.002345097	ANPEP, ANGPTL4, EREG, RHOB, IL8, ECGF1, NRP1
Regulation of cell proliferation	16	6.45E-04	PBEF1, LIF, MXD4, ARHGEF2, CXCL1, GPNMB, CDKN1A, QSCN6, IL11, IRS2, FTH1, IL6, EREG, EDG3, IL8, NRP1
Cell organization and biogenesis	47	0.001133913	SQSTM1, TRAK1, WASPIP, STX3A, IGFBP5, CTGF, APOE, HIST1H1C, CXCL1, DNAJC12, EPC1, GABARAPL1, KLF6, RRAGC, SVIL, LARP6, MICAL1, HIST2H2AA, H2BFS, SLC3A2, FMNL2, TINF2, PLEC1, STX1A, TUBA1, DUSP16, HIST2H2BE, STX11, RHOF, ARHGEF2, RHOB, HIST1H2BK, TMOD1, ROCK1, SLC22A4, VAT1, FSCN1, QSCN6, BET1, HIST1H2BD, ATG4A, KIF1A, LTBP4, MAP4, ECGF1, KLHL5, NRP1
Cell differentiation	21	0.001730483	SQSTM1, PTGS2, APOE, ANGPTL4, PDLIM7, SERPINE2, RHOB, DHRS9, PAPPA, IL11, ANPEP, IL6, KLF6, NDRG1, LTBP4, EREG, NRG1, ECGF1, ARNT2, NRP1, IFRD1
Behavior	11	0.004559090	CCL20, PLD1, CXCL2, APOE, MAOA, PI3, CXCL1, PLAU, IL8, ECGF1, CCL5
Angiogenesis	7	0.001885665	ANPEP, ANGPTL4, EREG, RHOB, IL8, ECGF1, NRP1
Nucleosome assembly	7	0.007444314	HIST1H2BD, HIST2H2AA, HIST2H2BE, H2BFS, HIST1H1C, HIST1H2BK, SLC22A4
Cell adhesion	24	0.00542196	CLDN12, CTGF, LAMA4, CSPG2, RHOB, PKD1, CLDN1, TNFAIP6, CCL5, TPBG, KIAA0319, APP, ITGA5, LPP, GPR56, VTN, NID2, MYO10, IL8, COL7A1, MSLN, NRP1, ITGA3, ITGA2
Morphogenesis	27	8.06E-05	IGF2BP3, IGFBP5, CTGF, ANGPTL4, APOE, EPC1, MSX1, KLF6, RRAGC, SLC3A2, WNT5A, IER3, ARHGEF2, DHRS9, PKD1, RHOB, VAT1, QSCN6, ANPEP, LTBP4, EREG, EDG3, IL8, DCN, ECGF1, NRP1, ITGA2
Taxis	8	0.009882707	CCL20, PLD1, CXCL2, CXCL1, PLAU, IL8, ECGF1, CCL5
Glutamine family amino acid metabolism	5	0.007880038	GLS, GCLC, GFPT2, ASS, ASNS