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Cited by in CrossRef
For: Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, DeSantis TZ, Brodie EL, Malamud D, Poles MA, Pei Z. Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol 2010; 16(33): 4135-4144 [PMID: 20806429 DOI: 10.3748/wjg.v16.i33.4135]
URL: https://www.wjgnet.com/1007-9327/full/v16/i33/4135.htm
Number Citing Articles
1
Hiu-Yin Lao, Timothy Ting-Leung Ng, Ryan Yik-Lam Wong, Celia Sze-Ting Wong, Lam-Kwong Lee, Denise Sze-Hang Wong, Chloe Toi-Mei Chan, Stephanie Hoi-Ching Jim, Jake Siu-Lun Leung, Hazel Wing-Hei Lo, Ivan Tak-Fai Wong, Miranda Chong-Yee Yau, Jimmy Yiu-Wing Lam, Alan Ka-Lun Wu, Gilman Kit-Hang Siu, Sandra S. Richter. The Clinical Utility of Two High-Throughput 16S rRNA Gene Sequencing Workflows for Taxonomic Assignment of Unidentifiable Bacterial Pathogens in Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass SpectrometryJournal of Clinical Microbiology 2022; 60(1) doi: 10.1128/JCM.01769-21
2
Cindy H. Nakatsu, Noel B. Pavlovic, Muruleedhara N. Byappanahalli. Bacteria common to rhizosphere communities of Asiatic bittersweet across a post-glacial landscapeFrontiers in Ecology and Evolution 2022; 10 doi: 10.3389/fevo.2022.999099
3
Yael R. Nobel, Erik J. Snider, Griselda Compres, Daniel E. Freedberg, Hossein Khiabanian, Charles J. Lightdale, Nora C. Toussaint, Julian A. Abrams. Increasing Dietary Fiber Intake Is Associated with a Distinct Esophageal MicrobiomeClinical and Translational Gastroenterology 2018; 9(10): e199 doi: 10.1038/s41424-018-0067-7
4
Chao Yang, Yiying Zhao, Suji Im, Cindy Nakatsu, Yava Jones-Hall, Qing Jiang. Vitamin E delta-tocotrienol and metabolite 13’-carboxychromanol inhibit colitis-associated colon tumorigenesis and modulate gut microbiota in miceThe Journal of Nutritional Biochemistry 2021; 89: 108567 doi: 10.1016/j.jnutbio.2020.108567
5
Marcio Luis Busi Da Silva, Mauricio Egídio Cantão, Melissa Paola Mezzari, Jie Ma, Carlos Wolfgang Nossa. Assessment of Bacterial and Archaeal Community Structure in Swine Wastewater Treatment ProcessesMicrobial Ecology 2015; 70(1): 77 doi: 10.1007/s00248-014-0537-8
6
Helena Modrá, Eva Gruberová, Ondřej Konečný, Vít Ulmann, Petra Kaucká, Markéta Vlková, Antonín Tůma, Taťana Halešová, Jan Kudělka, Milan Geršl, Ivo Pavlík. Influx and concentration of triazine pesticides in the Amaterska cave system, Moravian Karst, Czech RepublicJournal of Soils and Sediments 2018; 18(2): 640 doi: 10.1007/s11368-017-1831-0
7
Lin Chen, Weibing Xun, Li Sun, Nan Zhang, Qirong Shen, Ruifu Zhang. Effect of different long-term fertilization regimes on the viral community in an agricultural soil of Southern ChinaEuropean Journal of Soil Biology 2014; 62: 121 doi: 10.1016/j.ejsobi.2014.03.006
8
Huisong Lee, Hyeon Kook Lee, Seog Ki Min, Won Hee Lee. 16S rDNA microbiome composition pattern analysis as a diagnostic biomarker for biliary tract cancerWorld Journal of Surgical Oncology 2020; 18(1) doi: 10.1186/s12957-020-1793-3
9
Ze Ren, Shudan Ye, Hongxuan Li, Xilei Huang, Luyao Chen. Differentiation of cognate bacterial communities in thermokarst landscapes: implications for ecological consequences of permafrost degradationBiogeosciences 2023; 20(20): 4241 doi: 10.5194/bg-20-4241-2023
10
Anna Klindworth, Elmar Pruesse, Timmy Schweer, Jörg Peplies, Christian Quast, Matthias Horn, Frank Oliver Glöckner. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studiesNucleic Acids Research 2013; 41(1): e1 doi: 10.1093/nar/gks808
11
Ching-Wei Chang, Chia-Yuan Liu, Hung-Chang Lee, Yen-Hua Huang, Li-Hui Li, Jen-Shiu Chiang Chiau, Tsang-En Wang, Cheng-Hsin Chu, Shou-Chuan Shih, Tung-Hu Tsai, Yu-Jen Chen. Lactobacillus casei Variety rhamnosus Probiotic Preventively Attenuates 5-Fluorouracil/Oxaliplatin-Induced Intestinal Injury in a Syngeneic Colorectal Cancer ModelFrontiers in Microbiology 2018; 9 doi: 10.3389/fmicb.2018.00983
12
Tomasz Dulski, Roman Kujawa, Martyna Godzieba, Slawomir Ciesielski. Effect of Salinity on the Gut Microbiome of Pike Fry (Esox lucius)Applied Sciences 2020; 10(7): 2506 doi: 10.3390/app10072506
13
Yan Jiang, Xuezhou Liu, Yongjiang Xu, Bao Shi, Bin Wang. Microbiota characteristics in Sebastes schlegelii intestine in early life stagesJournal of Oceanology and Limnology 2020; 38(1): 275 doi: 10.1007/s00343-019-9011-2
14
Yuejuan Jiang, Qiaohong Li, Wenqin Mao, Wengting Tang, James F. White, Haiyan Li. Endophytic bacterial community of Stellera chamaejasme L. and its role in improving host plants' competitiveness in grasslandsEnvironmental Microbiology 2022; 24(8): 3322 doi: 10.1111/1462-2920.15897
15
Kang Ma, Ze Ren, Jiaming Ma, Nannan Chen, Jingling Liu. Differential patterns and assembly processes of bacterial communities from distinct microhabitats in a subtropical estuaryFrontiers in Marine Science 2022; 9 doi: 10.3389/fmars.2022.1039387
16
Wei Huang, Ziqiang Lin, Ailing Sun, JieMin Deng, Anne Manyande, Hongbing Xiang, Gao Feng Zhao, Qingxiong Hong. The role of gut microbiota in diabetic peripheral neuropathy rats with cognitive dysfunctionFrontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1156591
17
Nadia Darwish, Jonathan Shao, Lori L. Schreier, Monika Proszkowiec-Weglarz. Choice of 16S ribosomal RNA primers affects the microbiome analysis in chicken cecaScientific Reports 2021; 11(1) doi: 10.1038/s41598-021-91387-w
18
Xiaozhou Fan, Alexander V Alekseyenko, Jing Wu, Brandilyn A Peters, Eric J Jacobs, Susan M Gapstur, Mark P Purdue, Christian C Abnet, Rachael Stolzenberg-Solomon, George Miller, Jacques Ravel, Richard B Hayes, Jiyoung Ahn. Human oral microbiome and prospective risk for pancreatic cancer: a population-based nested case-control studyGut 2018; 67(1): 120 doi: 10.1136/gutjnl-2016-312580
19
Melita Jaric, Jonathan Segal, Eugenia Silva-Herzog, Lisa Schneper, Kalai Mathee, Giri Narasimhan. Better primer design for metagenomics applications by increasing taxonomic distinguishabilityBMC Proceedings 2013; 7(S7) doi: 10.1186/1753-6561-7-S7-S4
20
François-Étienne Sylvain, Sidki Bouslama, Aleicia Holland, Nicolas Leroux, Pierre-Luc Mercier, Adalberto Luis Val, Nicolas Derome, Eva C. Sonnenschein, Elias Broman, Pengfa Li. Bacterioplankton Communities in Dissolved Organic Carbon-Rich Amazonian Black WaterMicrobiology Spectrum 2023; 11(3) doi: 10.1128/spectrum.04793-22
21
Sylvie Manguin, Chung Thuy Ngo, Krajana Tainchum, Waraporn Juntarajumnong, Theeraphap Chareonviriyaphap, Anne-Laure Michon, Estelle Jumas-Bilak. Anopheles mosquitoes - New insights into malaria vectors2013;  doi: 10.5772/55610
22
Bingchang Zhang, Weidong Kong, Nan Wu, Yuanming Zhang. Bacterial diversity and community along the succession of biological soil crusts in the Gurbantunggut Desert, Northern ChinaJournal of Basic Microbiology 2016; 56(6): 670 doi: 10.1002/jobm.201500751
23
Wancai XIA, Mei ZHAO, Dali WANG, Fan WANG, Hua CHEN, Guoqi LIU, Lifeng ZHU, Dayong LI. Invasion and defense of the basic social unit in a nonhuman primate society leads to sexual differences in the gut microbiomeIntegrative Zoology 2022; 17(1): 168 doi: 10.1111/1749-4877.12608
24
Naraporn Somboonna, Alisa Wilantho, Chutika Srisuttiyakorn, Anunchai Assawamakin, Sissades Tongsima. Bacterial communities on facial skin of teenage and elderly Thai femalesArchives of Microbiology 2017; 199(7): 1035 doi: 10.1007/s00203-017-1375-0
25
Lin Chen, Kai Fang, Jie Zhou, Zhi-Ping Yang, Xing-Fan Dong, Guang-Hui Dai, Han-Bo Zhang. Enrichment of soil rare bacteria in root by an invasive plant Ageratina adenophoraScience of The Total Environment 2019; 683: 202 doi: 10.1016/j.scitotenv.2019.05.220
26
Yue Hu, Fang Chen, Haiyong Ye, Bin Lu. Integrative analysis of the gut microbiome and metabolome in a rat model with stress induced irritable bowel syndromeScientific Reports 2021; 11(1) doi: 10.1038/s41598-021-97083-z
27
Matthew C. Thomas, Dallas K. Thomas, L. Brent Selinger, G. Douglas Inglis. spyder, a new method for in silico design and assessment of 16S rRNA gene primers for molecular microbial ecologyFEMS Microbiology Letters 2011; 320(2): 152 doi: 10.1111/j.1574-6968.2011.02302.x
28
Huabin ZHANG, Wengang LI, Genjun TU, Ke SUN, Liuyang YANG, Ziyi WANG, Zirui WU, Yongkang ZHOU, Song ZHANG, Hao SUN, Changshun SHENG, Xiaoping WANG, Rongjun ZHANG, Xiaobing WU, Tao PAN. Host Genetic Background Impacts Microbiome Composition in Newborn AlligatorAsian Herpetological Research 2023; 14(3): 237 doi: 10.3724/ahr.2095-0357.2023.0007
29
春香 李. The Application of 16SrRNA Sequences Analysis in Oral Microbial CommunityQianRen Biology 2014; 1(02): 11 doi: 10.12677/QRB.2014.12007
30
Shan-Hua Yang, Chi Chen, Yunli Eric Hsieh, Sung-Yin Yang, Hau-Wen Li, Tzu-Yun Ching, Chia-Hui Wang, Ching-Fong Chang, Sen-Lin Tang, Guan-Chung Wu. Bacterial Dynamics in the Accessory Nidamental Gland of <i>Sepioteuthis lessoniana</i> throughout MaturationMicrobes and Environments 2021; 36(4): n/a doi: 10.1264/jsme2.ME21030
31
Haiping Zheng, Tianjie Yang, Yanzhuo Bao, Panpan He, Keming Yang, Xinlan Mei, Zhong Wei, Yangchun Xu, Qirong Shen, Samiran Banerjee. Network analysis and subsequent culturing reveal keystone taxa involved in microbial litter decomposition dynamicsSoil Biology and Biochemistry 2021; 157: 108230 doi: 10.1016/j.soilbio.2021.108230
32
Tien-En Chang, Jiing-Chyuan Luo, Ueng-Cheng Yang, Yi-Hsiang Huang, Ming-Chih Hou, Fa-Yauh Lee. Fecal microbiota profile in patients with inflammatory bowel disease in TaiwanJournal of the Chinese Medical Association 2021; 84(6): 580 doi: 10.1097/JCMA.0000000000000532
33
Rafael Mazer Etto, Leonardo Magalhães Cruz, Ederson da Conceição Jesus, Carolina Weigert Galvão, Franklin Galvão, Emanuel Maltempi de Souza, Fábio de Oliveira Pedrosa, Maria Berenice Reynaud Steffens. Seasonal changes in dominant bacterial taxa from acidic peatlands of the Atlantic Rain ForestResearch in Microbiology 2014; 165(7): 517 doi: 10.1016/j.resmic.2014.05.036
34
Karoline Faust, J. Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower, Christos A. Ouzounis. Microbial Co-occurrence Relationships in the Human MicrobiomePLoS Computational Biology 2012; 8(7): e1002606 doi: 10.1371/journal.pcbi.1002606
35
Christine Dominianni, Rashmi Sinha, James J. Goedert, Zhiheng Pei, Liying Yang, Richard B. Hayes, Jiyoung Ahn, Brenda A Wilson. Sex, Body Mass Index, and Dietary Fiber Intake Influence the Human Gut MicrobiomePLOS ONE 2015; 10(4): e0124599 doi: 10.1371/journal.pone.0124599
36
Tom Bott, George Shaw, Simon Gregory. A simple method for testing and controlling inhibition in soil and sediment samples for qPCRJournal of Microbiological Methods 2023; 212: 106795 doi: 10.1016/j.mimet.2023.106795
37
Shao K. Huang, Kun T. Ye, Wei F. Huang, Bi H. Ying, Xin Su, Li H. Lin, Jiang H. Li, Yan P. Chen, Ji L. Li, Xiu L. Bao, Jian Z. Hu, Ashley Shade. Influence of Feeding Type and Nosema ceranae Infection on the Gut Microbiota of Apis cerana Workers mSystems 2018; 3(6) doi: 10.1128/mSystems.00177-18
38
Xiu-lan Xie, Gang Zhang, Hai-hui Gao, Ke-xin Deng, Yue-feng Chu, Dao-yan Wu, Shi-ying Yan, Jie Zhou, Jian Zhao. Analysis of bovine colostrum microbiota at a dairy farm in Ningxia, ChinaInternational Dairy Journal 2021; 119: 104984 doi: 10.1016/j.idairyj.2021.104984
39
Jianyong Liang, Tiecheng Wu, Tao Wang, Yuejun Ma, Yurong Li, Shengguo Zhao, Yanli Guo, Bin Liu. Moringa oleifera leaf ethanolic extract benefits cashmere goat semen quality via improving rumen microbiota and metabolomeFrontiers in Veterinary Science 2023; 10 doi: 10.3389/fvets.2023.1049093
40
Ahmad R. Alsayed, Anas Abed, Heba A. Khader, Laith M. H. Al-Shdifat, Luai Hasoun, Mamoon M. D. Al-Rshaidat, Mohammad Alkhatib, Malek Zihlif. Molecular Accounting and Profiling of Human Respiratory Microbial Communities: Toward Precision Medicine by Targeting the Respiratory Microbiome for Disease Diagnosis and TreatmentInternational Journal of Molecular Sciences 2023; 24(4): 4086 doi: 10.3390/ijms24044086
41
Stefano Castellana, Vittoriana De Laurentiis, Angelica Bianco, Laura Del Sambro, Massimo Grassi, Francesco De Leonardis, Anna Maria Derobertis, Carmen De Carlo, Eleonora Sparapano, Adriana Mosca, Stefania Stolfa, Luigi Ronga, Luigi Santacroce, Maria Chironna, Michela Parisi, Loredana Capozzi, Antonio Parisi. Pannonibacter anstelovis sp. nov. Isolated from Two Cases of Bloodstream Infections in Paediatric PatientsMicroorganisms 2024; 12(4): 799 doi: 10.3390/microorganisms12040799
42
Jianguo Guo, Yi Xiong, Taisheng Kang, Hua Zhu, Qiwen Yang, Chuan Qin. Effect of formaldehyde exposure on bacterial communities in simulating indoor environmentsScientific Reports 2021; 11(1) doi: 10.1038/s41598-021-00197-7
43
Y. Yang, H. Wu, Sh. Wang. Comparison of Microbial Communities in the Rhizosphere Soils from Two Varieties of Camellia sinensis in Yunnan Province, ChinaMicrobiology 2021; 90(6): 801 doi: 10.1134/S0026261721060163
44
Hsin-I Chiang, Jian-Rong Li, Chun-Chi Liu, Po-Yu Liu, Hsin-Hua Chen, Yi-Ming Chen, Joung-Liang Lan, Der-Yuan Chen. An Association of Gut Microbiota with Different Phenotypes in Chinese Patients with Rheumatoid ArthritisJournal of Clinical Medicine 2019; 8(11): 1770 doi: 10.3390/jcm8111770
45
Indu Pant, Ravindranath Shashidhar. Inter-species competition of surface bacterial flora of pomegranate and their role in spoilageWorld Journal of Microbiology and Biotechnology 2023; 39(10) doi: 10.1007/s11274-023-03709-x
46
Yuan-Cheng Si, Chen-Chen Ren, Er-Wei Zhang, Zhao-Xia Kang, Xi-Ya Mo, Qing-Qing Li, Bo Chen. Integrative Analysis of the Gut Microbiota and Metabolome in Obese Mice with Electroacupuncture by 16S rRNA Gene Sequencing and HPLC–MS-based Metabolic ProfilingThe American Journal of Chinese Medicine 2022; 50(03): 673 doi: 10.1142/S0192415X22500276
47
Jianzhong Hu, Paula Benny, Michelle Wang, Yula Ma, Luca Lambertini, Inga Peter, Yajuan Xu, Men-Jean Lee. Intrauterine Growth Restriction Is Associated with Unique Features of the Reproductive MicrobiomeReproductive Sciences 2021; 28(3): 828 doi: 10.1007/s43032-020-00374-5
48
Denise Tornavoi de Castro, Cássio do Nascimento, Oswaldo Luiz Alves, Emerson de Souza Santos, José Augusto Marcondes Agnelli, Andréa Cândido dos Reis. Analysis of the oral microbiome on the surface of modified dental polymersArchives of Oral Biology 2018; 93: 107 doi: 10.1016/j.archoralbio.2018.06.005
49
Tibebu Habtewold, Luc Duchateau, George K. Christophides. Flow cytometry analysis of the microbiota associated with the midguts of vector mosquitoesParasites & Vectors 2016; 9(1) doi: 10.1186/s13071-016-1438-0
50
Na Li, Qin-Ming Cai, Ni-Ya Hu, Shu-ling Jiang, Fu-Qing Chen, Qiao-Qiao Hu, Fen Yang, Chao-Zhu He. Pyrosequencing analysis of bacterial community changes in dental unit waterlines after chlorogenic acid treatmentFrontiers in Cellular and Infection Microbiology 2024; 14 doi: 10.3389/fcimb.2024.1303099
51
Haoyue Liu, Jinan Cheng, Hui Jin, Zhongxiang Xu, Xiaoyan Yang, Deng Min, Xinxin Xu, Xiangfeng Shao, Dengxue Lu, Bo Qin. Characterization of Rhizosphere and Endophytic Microbial Communities Associated with Stipa purpurea and Their Correlation with Soil Environmental FactorsPlants 2022; 11(3): 363 doi: 10.3390/plants11030363
52
Cecilia G. Flocco, Anika Methner, Franziska Burkart, Alicia Geppert, Jörg Overmann. Touching the (almost) untouchable: a minimally invasive workflow for microbiological and biomolecular analyses of cultural heritage objectsFrontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1197837
53
Jun Mu, Xia Cui, Mingjiao Shao, Yuxia Wang, Qiao Yang, Guangfeng Yang, Liying Zheng, O. Roger Anderson. Microbial origin of bioflocculation components within a promising natural bioflocculant resource of Ruditapes philippinarum conglutination mud from an aquaculture farm in Zhoushan, ChinaPLOS ONE 2019; 14(6): e0217679 doi: 10.1371/journal.pone.0217679
54
Negash Kabtimer Bereded, Getachew Beneberu Abebe, Solomon Workneh Fanta, Manuel Curto, Herwig Waidbacher, Harald Meimberg, Konrad J. Domig. The gut bacterial microbiome of Nile tilapia (Oreochromis niloticus) from lakes across an altitudinal gradientBMC Microbiology 2022; 22(1) doi: 10.1186/s12866-022-02496-z
55
Raymond J.T. Kim, Kristi Biswas, Michael Hoggard, Michael W. Taylor, Richard G. Douglas. Paired analysis of the microbiota of surface mucus and whole‐tissue specimens in patients with chronic rhinosinusitisInternational Forum of Allergy & Rhinology 2015; 5(10): 877 doi: 10.1002/alr.21600
56
Jitrawadee Intirach, Xin Lv, Nataya Sutthanont, Benchi Cai, Danita Champakaew, Tao Chen, Qian Han, Zhiyue Lv. Molecular and next-generation sequencing analysis of tick-borne pathogens of Rhipicephalus ticks (Acari: Ixodidae) in cattle and dogsActa Tropica 2024; 252: 107138 doi: 10.1016/j.actatropica.2024.107138
57
Ivan Kushkevych, Eliška Kobzová, Monika Vítězová, Tomáš Vítěz, Dani Dordević, Milan Bartoš. Acetogenic microorganisms in operating biogas plants depending on substrate combinationsBiologia 2019; 74(9): 1229 doi: 10.2478/s11756-019-00283-2
58
Xueqing Shi, Kok Kwang Ng, Xiao-Ran Li, How Yong Ng. Investigation of Intertidal Wetland Sediment as a Novel Inoculation Source for Anaerobic Saline Wastewater TreatmentEnvironmental Science & Technology 2015; 49(10): 6231 doi: 10.1021/acs.est.5b00546
59
Phillip R. Myer, MinSeok Kim, Harvey C. Freetly, Timothy P.L. Smith. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steersJournal of Microbiological Methods 2016; 127: 132 doi: 10.1016/j.mimet.2016.06.004
60
Jun Mu, Qingxue Leng, Guangfeng Yang, Baikang Zhu. Anaerobic degradation of high-concentration polycyclic aromatic hydrocarbons (PAHs) in seawater sedimentsMarine Pollution Bulletin 2021; 167: 112294 doi: 10.1016/j.marpolbul.2021.112294
61
Cindy H. Nakatsu, Muruleedhara N. Byappanahalli, Meredith B. Nevers. Bacterial Community 16S rRNA Gene Sequencing Characterizes Riverine Microbial Impact on Lake MichiganFrontiers in Microbiology 2019; 10 doi: 10.3389/fmicb.2019.00996
62
François‐Étienne Sylvain, Eric Normandeau, Aleicia Holland, Adalberto Luis Val, Nicolas Derome. Genomics of Serrasalmidae teleosts through the lens of microbiome fingerprintingMolecular Ecology 2022; 31(18): 4656 doi: 10.1111/mec.16574
63
Ivan Kushkevych, Jiří Cejnar, Monika Vítězová, Tomáš Vítěz, Dani Dordević, Yannick J. Bomble. Occurrence of Thermophilic Microorganisms in Different Full Scale Biogas PlantsInternational Journal of Molecular Sciences 2019; 21(1): 283 doi: 10.3390/ijms21010283
64
Zhuocheng Liu, Yangang Yang, Shuangxuan Ji, Di Dong, Yinruizhi Li, Mengdi Wang, Liebao Han, Xueping Chen. Effects of Elevation and Distance from Highway on the Abundance and Community Structure of Bacteria in Soil along Qinghai-Tibet HighwayInternational Journal of Environmental Research and Public Health 2021; 18(24): 13137 doi: 10.3390/ijerph182413137
65
Xuelei Zhang, Baoyang Xu, Zhenping Hou, Chunlin Xie, Yaorong Niu, Qiuzhong Dai, Xianghua Yan, Duanqin Wu. Dietary ε-Polylysine Affects on Gut Microbiota and Plasma Metabolites Profiling in MiceFrontiers in Nutrition 2022; 9 doi: 10.3389/fnut.2022.842686
66
Fabiana de Melo, Fernanda Carpes Milanesi, Patrícia Daniela Melchiors Angst, Rui Vicente Oppermann. A systematic review of the microbiota composition in various peri-implant conditions: data from 16S rRNA gene sequencingArchives of Oral Biology 2020; 117: 104776 doi: 10.1016/j.archoralbio.2020.104776
67
Chenyu Liu, Defeng Han, Haiqing Yang, Zhiling Liu, Chengda Gao, Yueping Liu. Effects of peach branch organic fertilizer on the soil microbial community in peach orachardsFrontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1223420
68
Ji-Hoi Moon, Jae-Hyung Lee. Probing the diversity of healthy oral microbiome with bioinformatics approachesBMB Reports 2016; 49(12): 662 doi: 10.5483/BMBRep.2016.49.12.164
69
Purnima S. Kumar, Michael R. Brooker, Scot E. Dowd, Terry Camerlengo, Jonathan H. Badger. Target Region Selection Is a Critical Determinant of Community Fingerprints Generated by 16S PyrosequencingPLoS ONE 2011; 6(6): e20956 doi: 10.1371/journal.pone.0020956
70
Martin Černý, Monika Vítězová, Tomáš Vítěz, Milan Bartoš, Ivan Kushkevych. Variation in the Distribution of Hydrogen Producers from the Clostridiales Order in Biogas Reactors Depending on Different Input SubstratesEnergies 2018; 11(12): 3270 doi: 10.3390/en11123270
71
Xiao Wu, Kathryn Berkow, Daniel N Frank, Ellen Li, Ajay S Gulati, Wei Zhu. Comparative analysis of microbiome measurement platforms using latent variable structural equation modelingBMC Bioinformatics 2013; 14(1) doi: 10.1186/1471-2105-14-79
72
Madhura Castelino, Stephen Eyre, John Moat, Graeme Fox, Paul Martin, Pauline Ho, Mathew Upton, Anne Barton. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platformBMC Microbiology 2017; 17(1) doi: 10.1186/s12866-017-0927-4
73
Shangmeng Li, Wei Fan, Gang Xu, Ying Cao, Xin Zhao, Suwei Hao, Bin Deng, Siyuan Ren, Shanglian Hu. Bio-organic fertilizers improve Dendrocalamus farinosus growth by remolding the soil microbiome and metabolomeFrontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1117355
74
Wuze Ren, Yingfei Ma, Liying Yang, Agegnehu Gettie, January Salas, Kasi Russell, James Blanchard, Amy Davidow, Zhiheng Pei, Theresa L. Chang, Cecilia Cheng-Mayer. Fast disease progression in simian HIV-infected female macaque is accompanied by a robust local inflammatory innate immune and microbial responseAIDS 2015; 29(10): F1 doi: 10.1097/QAD.0000000000000711
75
Marlène Keravec, Jérôme Mounier, Emmanuel Prestat, Sophie Vallet, Janet K Jansson, Gaëtan Burgaud, Sylvain Rosec, Stéphanie Gouriou, Gilles Rault, Emmanuel Coton, Georges Barbier, Geneviève Héry-Arnaud. Insights into the respiratory tract microbiota of patients with cystic fibrosis during early Pseudomonas aeruginosa colonizationSpringerPlus 2015; 4(1) doi: 10.1186/s40064-015-1207-0
76
Richard A. Hurt, Michael S. Robeson, Migun Shakya, James G. Moberly, Tatiana A. Vishnivetskaya, Baohua Gu, Dwayne A. Elias, Ulrich Nübel. Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay EnvironmentsPLoS ONE 2014; 9(7): e102826 doi: 10.1371/journal.pone.0102826
77
Xin Ma, Guoqiang Zhang, Fengting Li, Mingyang Jiao, Shunyu Yao, Zhipeng Chen, Ziyong Liu, Yongyu Zhang, Ming Lv, Licheng Liu. Boosting the Microbial Electrosynthesis of Acetate from CO2 by Hydrogen Evolution Catalysts of Pt Nanoparticles/rGOCatalysis Letters 2021; 151(10): 2939 doi: 10.1007/s10562-021-03537-4
78
Mathias Hutzler, Jana Čmielová, Tobias Frank, Andreas Brandl, Fritz Jacob, Maximilian Michel. Identification of Microflora in a Biological Brewer’s Wort Acidification Process Run Continuously for 20 YearsFermentation 2018; 4(3): 51 doi: 10.3390/fermentation4030051
79
Nelly Romani Vestman, Tsute Chen, Pernilla Lif Holgerson, Carina Öhman, Ingegerd Johansson, Jan S Suchodolski. Oral Microbiota Shift after 12-Week Supplementation with Lactobacillus reuteri DSM 17938 and PTA 5289; A Randomized Control TrialPLOS ONE 2015; 10(5): e0125812 doi: 10.1371/journal.pone.0125812
80
Lisa M Bode, Diana Bunzel, Melanie Huch, Gyu-Sung Cho, Denise Ruhland, Mirko Bunzel, Achim Bub, Charles MAP Franz, Sabine E Kulling. In vivo and in vitro metabolism of trans-resveratrol by human gut microbiotaThe American Journal of Clinical Nutrition 2013; 97(2): 295 doi: 10.3945/ajcn.112.049379
81
A. Yu. Merkel, I. Yu. Tarnovetskii, O. A. Podosokorskaya, S. V. Toshchakov. Analysis of 16S rRNA Primer Systems for Profiling of Thermophilic Microbial CommunitiesMicrobiology 2019; 88(6): 671 doi: 10.1134/S0026261719060110
82
Sofia Nikolaki, George Tsiamis. Microbial Diversity in the Era of Omic TechnologiesBioMed Research International 2013; 2013: 1 doi: 10.1155/2013/958719
83
James J. Ashton, R. Mark Beattie, Sarah Ennis, David W. Cleary. Analysis and Interpretation of the Human MicrobiomeInflammatory Bowel Diseases 2016; 22(7): 1713 doi: 10.1097/MIB.0000000000000809
84
Yi-Lin Chen, Chuan-Chun Lee, Ya-Lan Lin, Kai-Min Yin, Chung-Liang Ho, Tsunglin Liu. Obtaining long 16S rDNA sequences using multiple primers and its application on dioxin-containing samplesBMC Bioinformatics 2015; 16(S18) doi: 10.1186/1471-2105-16-S18-S13
85
Joan A. Phelan, William R. Abrams, Robert G. Norman, Yihong Li, Maura Laverty, Patricia M. Corby, Jason Nembhard, Dinah Neri, Cheryl A. Barber, Judith A. Aberg, Gene S. Fisch, Michael A. Poles, Daniel Malamud, Dimitrios Paraskevis. Design Aspects of a Case-Control Clinical Investigation of the Effect of HIV on Oral and Gastrointestinal Soluble Innate Factors and MicrobesPLoS ONE 2014; 9(11): e112901 doi: 10.1371/journal.pone.0112901
86
Vandan Nagar, Lipika Pansare Godambe, Ravindranath Shashidhar. Development of microbiologically safe mung bean sprouts using combination treatment of sodium hypochlorite and gamma radiationInternational Journal of Food Science & Technology 2016; 51(3): 595 doi: 10.1111/ijfs.13020
87
Martin Struk, Monika Vítězová, Tomáš Vítěz, Milan Bartoš, Ivan Kushkevych. Modřice Plant Anaerobic Digester: Microbial Distribution and Biogas ProductionWater, Air, & Soil Pollution 2019; 230(10) doi: 10.1007/s11270-019-4289-4
88
Binhong Hu, Yuqing Dong, Wenjing Zhou, Yichuan Ma, Luyao Li, Xianhua Fu, Wenxuan Zhang, Yuanyue Luo, Jingyu Pu, Xin Deng, Rong Zhang, Songqing Liu, Brenda A Wilson. Effect of Inonotus obliquus polysaccharide on composition of the intestinal flora in mice with acute endometritisPLOS ONE 2021; 16(11): e0259570 doi: 10.1371/journal.pone.0259570
89
Alexis Canino, Clarisse Lemonnier, Benjamin Alric, Agnès Bouchez, Isabelle Domaizon, Christophe Laplace-Treyture, Frédéric Rimet. Which barcode to decipher freshwater microalgal assemblages? Tests on mock communitiesInternational Journal of Limnology 2023; 59: 8 doi: 10.1051/limn/2023008
90
Reena Patel, Prashant Kunjadia, Prakash Koringa, Chaitanya Joshi, Anju Kunjadiya. Microbiological profiles in clinical and subclinical cases of mastitis in milking Jafarabadi buffaloResearch in Veterinary Science 2019; 125: 94 doi: 10.1016/j.rvsc.2019.05.012
91
Dongbiao Lv, Xueying Liu, Yanlu Dong, Zizheng Yan, Xuan Zhang, Ping Wang, Xiangqun Yuan, Yiping Li. Comparison of Gut Bacterial Communities of Fall Armyworm (Spodoptera frugiperda) Reared on Different Host PlantsInternational Journal of Molecular Sciences 2021; 22(20): 11266 doi: 10.3390/ijms222011266
92
Mohamed I. Azzam, Abdallah S. Korayem, Sahar A. Othman, Fafy A. Mohammed. Assessment of some drinking water plants efficiency at El-Menofeya Governorate, EgyptEnvironmental Nanotechnology, Monitoring & Management 2022; 18: 100705 doi: 10.1016/j.enmm.2022.100705
93
Kristi Biswas, Michael W. Taylor, Susan J. Turner. Successional development of biofilms in moving bed biofilm reactor (MBBR) systems treating municipal wastewaterApplied Microbiology and Biotechnology 2014; 98(3): 1429 doi: 10.1007/s00253-013-5082-8
94
Kilia Y. Liu, Cindy H. Nakatsu, Yava Jones-Hall, Ariangela Kozik, Qing Jiang. Vitamin E alpha- and gamma-tocopherol mitigate colitis, protect intestinal barrier function and modulate the gut microbiota in miceFree Radical Biology and Medicine 2021; 163: 180 doi: 10.1016/j.freeradbiomed.2020.12.017
95
Isabel Abellan-Schneyder, Monica S. Matchado, Sandra Reitmeier, Alina Sommer, Zeno Sewald, Jan Baumbach, Markus List, Klaus Neuhaus, Susannah Green Tringe. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene SequencingmSphere 2021; 6(1) doi: 10.1128/mSphere.01202-20
96
Cédric Bernarde, Marlène Keravec, Jérôme Mounier, Stéphanie Gouriou, Gilles Rault, Claude Férec, Georges Barbier, Geneviève Héry-Arnaud, Michael Tunney. Impact of the CFTR-Potentiator Ivacaftor on Airway Microbiota in Cystic Fibrosis Patients Carrying A G551D MutationPLOS ONE 2015; 10(4): e0124124 doi: 10.1371/journal.pone.0124124
97
Yang Hu, Heather Fair, Qiao Liu, Ziwei Wang, Baoli Duan, Xuyang Lu. Diversity and co-occurrence networks of bacterial and fungal communities on two typical debris-covered glaciers, southeastern Tibetan PlateauMicrobiological Research 2023; 273: 127409 doi: 10.1016/j.micres.2023.127409
98
Onkar A. Naik, Ravindranath Shashidhar, Devashish Rath, Jayant R. Bandekar, Archana Rath. Characterization of multiple antibiotic resistance of culturable microorganisms and metagenomic analysis of total microbial diversity of marine fish sold in retail shops in Mumbai, IndiaEnvironmental Science and Pollution Research 2018; 25(7): 6228 doi: 10.1007/s11356-017-0945-7
99
Changlin Xu, Dongyang Han, Xingxing Song, Xin Zhang, Chengcheng Liu, Jiani Zhang, Bingqian Shen, Zixin Li, Runwen Ma, Yinan Li, Yuanyuan Xin, Wantong Ji, Lingyuan Zhang, Xiaoye Wang, Chuanhuo Hu, Xun Li. The possible role of GnIH in stress and gut dysfunction in hensPoultry Science 2024; : 103757 doi: 10.1016/j.psj.2024.103757
100
Reena J. Patel, Ramesh J. Pandit, Vaibhav D. Bhatt, Prashant D. Kunjadia, Devendra S. Nauriyal, Prakash G. Koringa, Chaitanya G. Joshi, Anju P. Kunjadia. Metagenomic approach to study the bacterial community in clinical and subclinical mastitis in buffaloMeta Gene 2017; 12: 4 doi: 10.1016/j.mgene.2016.12.014
101
Terry C Hazen, Andrea M Rocha, Stephen M Techtmann. Advances in monitoring environmental microbesCurrent Opinion in Biotechnology 2013; 24(3): 526 doi: 10.1016/j.copbio.2012.10.020
102
Erik J. Snider, Griselda Compres, Daniel E. Freedberg, Marla J. Giddins, Hossein Khiabanian, Charles J. Lightdale, Yael R. Nobel, Nora C. Toussaint, Anne-Catrin Uhlemann, Julian A. Abrams. Barrett's esophagus is associated with a distinct oral microbiomeClinical and Translational Gastroenterology 2018; 9(3): e135 doi: 10.1038/s41424-018-0005-8
103
Ben Jia, Liming Xuan, Kaiye Cai, Zhiqiang Hu, Liangxiao Ma, Chaochun Wei, Paul Jaak Janssen. NeSSM: A Next-Generation Sequencing Simulator for MetagenomicsPLoS ONE 2013; 8(10): e75448 doi: 10.1371/journal.pone.0075448
104
Jin Wang, Ye Han, Fanrui Meng, Jinzhao Zhao, Zhijiang Zhou, Huan Fan. Fecal Microbiota Succession of Piglets from Birth to Post-weaning by 454 Pyrosequencing AnalysisTransactions of Tianjin University 2017; 23(3): 211 doi: 10.1007/s12209-017-0045-2
105
Anna Oberle, Lara Urban, Stefanie Falch-Leis, Chiara Ennemoser, Yoko Nagai, Kyota Ashikawa, Patricia A. Ulm, Markus Hengstschläger, Michael Feichtinger. 16S rRNA long-read nanopore sequencing is feasible and reliable for endometrial microbiome analysisReproductive BioMedicine Online 2021; 42(6): 1097 doi: 10.1016/j.rbmo.2021.03.016
106
Yuchun Yang, Meng Li, Hui Li, Xiao-Yan Li, Jih-Gaw Lin, Martin Denecke, Ji-Dong Gu. Specific and effective detection of anammox bacteria using PCR primers targeting the 16S rRNA gene and functional genesScience of The Total Environment 2020; 734: 139387 doi: 10.1016/j.scitotenv.2020.139387
107
Suat Peng Sam, Hua Tiang Tan, Kumar Sudesh, Rohana Adnan, Adeline Su Yien Ting, Si Ling Ng. Phenol and p-nitrophenol biodegradations by acclimated activated sludge: Influence of operational conditions on biodegradation kinetics and responding microbial communitiesJournal of Environmental Chemical Engineering 2021; 9(4): 105420 doi: 10.1016/j.jece.2021.105420
108
Luisa W. Hugerth, Anders F. Andersson. Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis TestingFrontiers in Microbiology 2017; 8 doi: 10.3389/fmicb.2017.01561
109
Jordan L. Plieskatt, Raksawan Deenonpoe, Jason P. Mulvenna, Lutz Krause, Banchob Sripa, Jeffrey M. Bethony, Paul J. Brindley. Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome The FASEB Journal 2013; 27(11): 4572 doi: 10.1096/fj.13-232751
110
Luisa W. Hugerth, Emilie E. L. Muller, Yue O. O. Hu, Laura A. M. Lebrun, Hugo Roume, Daniel Lundin, Paul Wilmes, Anders F. Andersson, Christian R. Voolstra. Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial ConsortiaPLoS ONE 2014; 9(4): e95567 doi: 10.1371/journal.pone.0095567
111
Fahim Ullah Khan, Yueyong Shang, Xueqing Chang, Hui Kong, Amina Zuberi, James K. H. Fang, Wei Liu, Jinxia Peng, Xingzhi Zhang, Menghong Hu, Youji Wang. Effects of Ocean Acidification, Hypoxia, and Warming on the Gut Microbiota of the Thick Shell Mussel Mytilus coruscus Through 16S rRNA Gene SequencingFrontiers in Marine Science 2021; 8 doi: 10.3389/fmars.2021.736338
112
Dipti W. Pitta, Nidhi Parmar, Amrut K. Patel, Nagaraju Indugu, Sanjay Kumar, Karsanbhai B. Prajapathi, Anand B. Patel, Bhaskar Reddy, Chaitanya Joshi, Kostas Bourtzis. Bacterial Diversity Dynamics Associated with Different Diets and Different Primer Pairs in the Rumen of Kankrej CattlePLoS ONE 2014; 9(11): e111710 doi: 10.1371/journal.pone.0111710
113
Weiwei Ma, Wenwen Li, Shuang Yu, Hongsheng Bian, Yanyan Wang, Yang Jin, Zhenhua Zhang, Qing Ma, Lili Huang. Immunomodulatory effects of complex probiotics on the immuno-suppressed mice induced by cyclophosphamideFrontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1055197
114
Shengqin Wang, Beili Sun, Jing Tu, Zuhong Lu. Improving the microbial community reconstruction at the genus level by multiple 16S rRNA regionsJournal of Theoretical Biology 2016; 398: 1 doi: 10.1016/j.jtbi.2016.03.016
115
A.G. Neto, R.A. Hickman, A. Khan, C. Nossa, Z. Pei. The Microbiota in Gastrointestinal Pathophysiology2017; : 1 doi: 10.1016/B978-0-12-804024-9.00001-X
116
Janet L. Sperling, K.L. Silva-Brandão, M.M. Brandão, V.K. Lloyd, S. Dang, C.S. Davis, F.A.H. Sperling, K.E. Magor. Comparison of bacterial 16S rRNA variable regions for microbiome surveys of ticksTicks and Tick-borne Diseases 2017; 8(4): 453 doi: 10.1016/j.ttbdis.2017.02.002
117
Zhaoran Zhang, Shuangshuang Tang, Xiaodi Liu, Xuelian Ren, Suna Wang, Zenggui Gao. The Effects of Trichoderma viride T23 on Rhizosphere Soil Microbial Communities and the Metabolomics of Muskmelon under Continuous CroppingAgronomy 2023; 13(4): 1092 doi: 10.3390/agronomy13041092
118
Daniel Lin, Brandilyn A. Peters, Charles Friedlander, Hal J. Freiman, James J. Goedert, Rashmi Sinha, George Miller, Mitchell A. Bernstein, Richard B. Hayes, Jiyoung Ahn. Association of dietary fibre intake and gut microbiota in adultsBritish Journal of Nutrition 2018; 120(9): 1014 doi: 10.1017/S0007114518002465
119
François-Étienne Sylvain, Aleicia Holland, Sidki Bouslama, Émie Audet-Gilbert, Camille Lavoie, Adalberto Luis Val, Nicolas Derome, Andrew J. McBain. Fish Skin and Gut Microbiomes Show Contrasting Signatures of Host Species and HabitatApplied and Environmental Microbiology 2020; 86(16) doi: 10.1128/AEM.00789-20
120
Negash Kabtimer Bereded, Manuel Curto, Konrad J. Domig, Getachew Beneberu Abebe, Solomon Workneh Fanta, Herwig Waidbacher, Harald Meimberg. Metabarcoding Analyses of Gut Microbiota of Nile Tilapia (Oreochromis niloticus) from Lake Awassa and Lake Chamo, EthiopiaMicroorganisms 2020; 8(7): 1040 doi: 10.3390/microorganisms8071040
121
Erik J. Snider, Griselda Compres, Daniel E. Freedberg, Hossein Khiabanian, Yael R. Nobel, Stephania Stump, Anne-Catrin Uhlemann, Charles J. Lightdale, Julian A. Abrams. Alterations to the Esophageal Microbiome Associated with Progression from Barrett's Esophagus to Esophageal AdenocarcinomaCancer Epidemiology, Biomarkers & Prevention 2019; 28(10): 1687 doi: 10.1158/1055-9965.EPI-19-0008
122
Wengang Li, Guangwei Fan, Ke Sun, Jingru Liu, Jinyan Liu, Yu Wang, En Li, Xiaobing Wu, Liang Shen, Tao Pan. Microbial community structure dynamics of invasive bullfrog with meningitis-like infectious diseaseFrontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1126195
123
Yiting Pan, Jin Qian, Xiaowan Ma, Wei Huang, James Kar-Hei Fang, Iqra Arif, Youji Wang, Yueyong Shang, Menghong Hu. Response of moulting genes and gut microbiome to nano-plastics and copper in juvenile horseshoe crab Tachypleus tridentatusMarine Environmental Research 2023; 191: 106128 doi: 10.1016/j.marenvres.2023.106128
124
Orna Mizrahi-Man, Emily R. Davenport, Yoav Gilad, Bryan A. White. Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study DesignsPLoS ONE 2013; 8(1): e53608 doi: 10.1371/journal.pone.0053608
125
Naraporn Somboonna, Alisa Wilantho, Kruawun Jankaew, Anunchai Assawamakin, Duangjai Sangsrakru, Sithichoke Tangphatsornruang, Sissades Tongsima, Vasu D. Appanna. Microbial Ecology of Thailand Tsunami and Non-Tsunami Affected TerrestrialsPLoS ONE 2014; 9(4): e94236 doi: 10.1371/journal.pone.0094236
126
S. Shivaji. Human Ocular Microbiome2022; : 67 doi: 10.1007/978-981-19-1754-7_3
127
Jie Zhang, Zhewen Chen, Yanwen Lu, Daoyuan Tu, Fengqian Zou, Shouwen Lin, Weinan Yu, Mingyong Miao, Hanping Shi. A Functional Food Inhibits Azoxymethane/Dextran Sulfate Sodium-Induced Inflammatory Colorectal Cancer in MiceOncoTargets and Therapy 2021; : 1465 doi: 10.2147/OTT.S283465
128
Dong-sheng Bai, Yi-wang Wang, Xu Yang, Jin-long Lai, Xue-gang Luo. Effects of long-term (10 years) remediation of Caragana on soil enzyme activities, heavy metals, microbial diversity and metabolic spectrum of coal gangueEcological Engineering 2022; 181: 106679 doi: 10.1016/j.ecoleng.2022.106679
129
Nossa Carlos, Yi-Wei Tang, Zhiheng Pei. Pearls and pitfalls of genomics-based microbiome analysisEmerging Microbes & Infections 2012; 1(1): 1 doi: 10.1038/emi.2012.41
130
Songqing Liu, Xin Deng, Zheng Li, Wenjing Zhou, Gang Wang, Jiasui Zhan, Binhong Hu. Environmental cadmium exposure alters the internal microbiota and metabolome of Sprague–Dawley ratsFrontiers in Veterinary Science 2023; 10 doi: 10.3389/fvets.2023.1219729
131
Corrie M Whisner, Berdine R Martin, Cindy H Nakatsu, Jon A Story, Claire J MacDonald-Clarke, Linda D McCabe, George P McCabe, Connie M Weaver. Soluble Corn Fiber Increases Calcium Absorption Associated with Shifts in the Gut Microbiome: A Randomized Dose-Response Trial in Free-Living Pubertal FemalesThe Journal of Nutrition 2016; 146(7): 1298 doi: 10.3945/jn.115.227256
132
Xi-Hsuan Lin, Kuo-Hung Huang, Wei-Hung Chuang, Jiing-Chyuan Luo, Chung-Chi Lin, Po-Hsiang Ting, Shih-Hao Young, Wen-Liang Fang, Ming-Chih Hou, Fa-Yauh Lee, Kun Yang. The long term effect of metabolic profile and microbiota status in early gastric cancer patients after subtotal gastrectomyPLOS ONE 2018; 13(11): e0206930 doi: 10.1371/journal.pone.0206930
133
Yulin Zhang, Yi Du, Zhihao Zhang, Waqar Islam, Fanjiang Zeng. Unveiling the diversity, composition, and dynamics of phyllosphere microbial communities in Alhagi sparsifolia across desert basins and seasons in Xinjiang, ChinaFrontiers in Microbiology 2024; 15 doi: 10.3389/fmicb.2024.1361756
134
Chunming Liu, Zhenfu Yang, Pengfei He, Shahzad Munir, Pengbo He, Yixin Wu, Honhing Ho, Yueqiu He. Fluazinam positively affected the microbial communities in clubroot cabbage rhizosphereScientia Horticulturae 2019; 256: 108519 doi: 10.1016/j.scienta.2019.05.046
135
Chong Liu, Qinghui Meng, Yongxing Chen, Mengsi Xu, Min Shen, Rui Gao, Shangquan Gan. Role of Age-Related Shifts in Rumen Bacteria and Methanogens in Methane Production in CattleFrontiers in Microbiology 2017; 8 doi: 10.3389/fmicb.2017.01563
136
Gu Rao, Shu-Zhen Yan, Wen-Long Song, Di Lin, Ya-Jing Chen, Shuang-Lin Chen. Distribution, assembly, and interactions of soil microorganisms in the bright coniferous forest area of China's cold temperate zoneScience of The Total Environment 2023; 897: 165429 doi: 10.1016/j.scitotenv.2023.165429
137
Maria Razzauti, Maxime Galan, Maria Bernard, Sarah Maman, Christophe Klopp, Nathalie Charbonnel, Muriel Vayssier-Taussat, Marc Eloit, Jean-François Cosson, Pamela L. C. Small. A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in WildlifePLOS Neglected Tropical Diseases 2015; 9(8): e0003929 doi: 10.1371/journal.pntd.0003929
138
Zifeng Han, Colin Pielsticker, Lenka Gerzova, Ivan Rychlik, Silke Rautenschlein. The influence of age on Campylobacter jejuni infection in chickenDevelopmental & Comparative Immunology 2016; 62: 58 doi: 10.1016/j.dci.2016.04.020
139
Xianglin Wang, Guolin Cai, Dianhui Wu, Jian Lu. Correlation between the bacterial community succession and purine compound changes during Huangjiu fermentationFood Microbiology 2024; 121: 104522 doi: 10.1016/j.fm.2024.104522
140
Chengfeng Yu, Jicheng Cao, Wen Du, Zhiyong Zhu, Min Xu. Changes in the population and functional profile of bacteria and fungi in the rhizosphere of Suaeda salsa is driven by invasion of Spartina alternifloraEcological Indicators 2022; 144: 109516 doi: 10.1016/j.ecolind.2022.109516
141
Hailing Yu, Ning Ling, Tingting Wang, Chen Zhu, Yin Wang, Shaojie Wang, Qiang Gao. Responses of soil biological traits and bacterial communities to nitrogen fertilization mediate maize yields across three soil typesSoil and Tillage Research 2019; 185: 61 doi: 10.1016/j.still.2018.08.017
142
Guolin Song, Yingcan Zhao, Junhao Lu, Zhe Liu, Jinqiang Quan, Lirui Zhu. Effects of Astaxanthin on Growth Performance, Gut Structure, and Intestinal Microorganisms of Penaeus vannamei under Microcystin-LR StressAnimals 2023; 14(1): 58 doi: 10.3390/ani14010058
143
Neha Misra, Tyler F. Wines, Colton L. Knopp, Mark A. McGuire, Juliette K. Tinker. Expression, immunogenicity and variation of iron-regulated surface protein A from bovine isolates of Staphylococcus aureusFEMS Microbiology Letters 2017; 364(9) doi: 10.1093/femsle/fnx082
144
Puja Gupta, Naseer Sangwan, Rup Lal, Jyoti Vakhlu. Bacterial diversity of Drass, cold desert in Western Himalaya, and its comparison with Antarctic and ArcticArchives of Microbiology 2015; 197(6): 851 doi: 10.1007/s00203-015-1121-4
145
Huixi Chen, Yaoyao Tu, Chen Zhang, Jie Li, Ting Wu, Suying Liu, Liying He, Aijun Zhang, Yan Li, Lu Li, Yilun Sui, Li Wang, Xiaojun Chen, Ji Xi, Yanting Wu, Li Jin, He-Feng Huang. Effect of transvaginal Lactobacillus supplementation on reversing lower genital tract dysbiosis and improving perinatal outcomes in PCOS patients after IVF-FET: a study protocol for a multicenter randomized controlled trialTrials 2023; 24(1) doi: 10.1186/s13063-023-07825-9
146
Jiyoung Ahn, Rashmi Sinha, Zhiheng Pei, Christine Dominianni, Jing Wu, Jianxin Shi, James J. Goedert, Richard B. Hayes, Liying Yang. Human Gut Microbiome and Risk for Colorectal CancerJNCI: Journal of the National Cancer Institute 2013; 105(24): 1907 doi: 10.1093/jnci/djt300
147
Jae Ri Kim, Kyulhee Han, Youngmin Han, Nayeon Kang, Tae-Seop Shin, Hyeon Ju Park, Hongbeom Kim, Wooil Kwon, Seungyeoun Lee, Yoon-Keun Kim, Taesung Park, Jin-Young Jang. Microbiome Markers of Pancreatic Cancer Based on Bacteria-Derived Extracellular Vesicles Acquired from Blood Samples: A Retrospective Propensity Score Matching AnalysisBiology 2021; 10(3): 219 doi: 10.3390/biology10030219
148
Nikole Radani, Amira Metwaly, Sandra Reitmeier, Theresa Baumeister, Jonas Ingermann, Julia Horstmann, Akanksha Anand, Ingrid Gatz, Florian Kohlmayer, Klaus-Peter Janssen, Julia Slotta-Huspenina, Roland M. Schmid, Dirk Haller, Julian A. Abrams, Michael Quante. Analysis of Fecal, Salivary, and Tissue Microbiome in Barrett's Esophagus, Dysplasia, and Esophageal AdenocarcinomaGastro Hep Advances 2022; 1(5): 755 doi: 10.1016/j.gastha.2022.04.003
149
Qian Liu, Linrui Zhong, Yingju Hu, Leiling Fu, Xingxin Hu, Yujing Gu, Qingqing Xie, Fangyi Liang, Qi Liu, Yue Lu. Effects of modified biochars on the shifts of short-chain fatty acid profile, iron reduction, and bacterial community in paddy soilFEMS Microbiology Ecology 2022; 98(12) doi: 10.1093/femsec/fiac131
150
Richard William McLaughlin, Philip A. Cochran, Scot E. Dowd. Metagenomic analysis of the gut microbiota of the Timber Rattlesnake, Crotalus horridusMolecular Biology Reports 2015; 42(7): 1187 doi: 10.1007/s11033-015-3854-1
151
Kristi Biswas, Michael Hoggard, Ravi Jain, Michael W. Taylor, Richard G. Douglas. The nasal microbiota in health and disease: variation within and between subjectsFrontiers in Microbiology 2015; 9 doi: 10.3389/fmicb.2015.00134
152
Astride Audirac-Chalifour, Kirvis Torres-Poveda, Margarita Bahena-Román, Juan Téllez-Sosa, Jesús Martínez-Barnetche, Bernardo Cortina-Ceballos, Guillermina López-Estrada, Karina Delgado-Romero, Ana I. Burguete-García, David Cantú, Alejandro García-Carrancá, Vicente Madrid-Marina, Maria Lina Tornesello. Cervical Microbiome and Cytokine Profile at Various Stages of Cervical Cancer: A Pilot StudyPLOS ONE 2016; 11(4): e0153274 doi: 10.1371/journal.pone.0153274
153
Changcai Wu, Yajie Ma, Dan Wang, Yongpan Shan, Xianpeng Song, Hongyan Hu, Xiangliang Ren, Xiaoyan Ma, Junyu Luo, Jinjie Cui, Yan Ma. Microbiology combined with metabonomics revealing the response of soil microorganisms and their metabolic functions exposed to phthalic acid estersEcotoxicology and Environmental Safety 2022; 233: 113338 doi: 10.1016/j.ecoenv.2022.113338
154
Mengli Zhao, Jun Yuan, Ruifu Zhang, Menghui Dong, Xuhui Deng, Chengzhi Zhu, Rong Li, Qirong Shen. Microflora that harbor the NRPS gene are responsible for Fusarium wilt disease-suppressive soilApplied Soil Ecology 2018; 132: 83 doi: 10.1016/j.apsoil.2018.08.022
155
Lijia Cui, Alison Morris, Elodie Ghedin. The human mycobiome in health and diseaseGenome Medicine 2013; 5(7): 63 doi: 10.1186/gm467
156
Haiying Ren, Hongyan Wang, Xingjiang Qi, Zheping Yu, Xiliang Zheng, Shuwen Zhang, Zhenshuo Wang, Muchen Zhang, Temoor Ahmed, Bin Li. The Damage Caused by Decline Disease in Bayberry Plants through Changes in Soil Properties, Rhizosphere Microbial Community Structure and MetabolitesPlants 2021; 10(10): 2083 doi: 10.3390/plants10102083
157
Claudia Vilo, Qunfeng Dong. Evaluation of the RDP Classifier Accuracy Using 16S rRNA Gene Variable RegionsMetagenomics 2012; 1: 1 doi: 10.4303/mg/235551
158
Ivan Kushkevych, Monika Vítězová, Tomáš Vítěz, Jozef Kováč, Petra Kaucká, Wojciech Jesionek, Milan Bartoš, Larry Barton. A new combination of substrates: biogas production and diversity of the methanogenic microorganismsOpen Life Sciences 2018; 13(1): 119 doi: 10.1515/biol-2018-0017
159
Suvendu Das, Chia-Chuan Liu, Jiin-Shuh Jean, Tsunglin Liu. Dissimilatory Arsenate Reduction and In Situ Microbial Activities and Diversity in Arsenic-rich Groundwater of Chianan Plain, Southwestern TaiwanMicrobial Ecology 2016; 71(2): 365 doi: 10.1007/s00248-015-0650-3
160
Yi-wang Wang, Dong-sheng Bai, Xu Yang, Yu Zhang, Xue-gang Luo. Soil sulfur cycle bacteria and metabolites affected by soil depth and afforestation conditions in high-sulfur coal mining areasApplied Soil Ecology 2023; 185: 104802 doi: 10.1016/j.apsoil.2022.104802
161
Soyoung Kwak, Mykhaylo Usyk, Dia Beggs, Heesun Choi, Dariush Ahdoot, Feng Wu, Lorraine Maceda, Huilin Li, Eun-Ok Im, Hae-Ra Han, Eunjung Lee, Anna H. Wu, Richard B. Hayes, Jiyoung Ahn. Sociobiome - Individual and neighborhood socioeconomic status influence the gut microbiome in a multi-ethnic population in the USnpj Biofilms and Microbiomes 2024; 10(1) doi: 10.1038/s41522-024-00491-y
162
Nicoletta Makowska, Krzysztof Zawierucha, Joanna Mokracka, Ryszard Koczura. First report of microorganisms of Caucasus glaciers (Georgia)Biologia 2016; 71(6): 620 doi: 10.1515/biolog-2016-0086
163
Alevtina Gall, Jutta Fero, Connor McCoy, Brian C. Claywell, Carissa A. Sanchez, Patricia L. Blount, Xiaohong Li, Thomas L. Vaughan, Frederick A. Matsen, Brian J. Reid, Nina R. Salama, Ken-ichi Mukaisho. Bacterial Composition of the Human Upper Gastrointestinal Tract Microbiome Is Dynamic and Associated with Genomic Instability in a Barrett’s Esophagus CohortPLOS ONE 2015; 10(6): e0129055 doi: 10.1371/journal.pone.0129055
164
Marija Kaevska, Petra Videnska, Petra Vasickova. Changes in Microbial Composition of Wastewater During Treatment in a Full-Scale PlantCurrent Microbiology 2016; 72(2): 128 doi: 10.1007/s00284-015-0924-5
165
Adriana González, Asier Fullaondo, Adrian Odriozola. Advances in Genetics 2024;  doi: 10.1016/bs.adgen.2024.01.003
166
Tianyi Fang, Xueyu Han, Yanling Yue. Disease-resistant varieties of Chinese cabbage (Brassica rapa L. ssp. pekinensis) inhibit Plasmodiophora brassicae infestation by stabilising root flora structureFrontiers in Plant Science 2024; 15 doi: 10.3389/fpls.2024.1328845
167
Bingrui Guo, Qi Wu, Cuicui Jiang, Yingxi Chen, Yiwei Dai, Chaofan Ji, Sufang Zhang, Liang Dong, Huipeng Liang, Xinping Lin. Inoculation of Yarrowia lipolytica promotes the growth of lactic acid bacteria, Debaryomyces udenii and the formation of ethyl esters in sour meatFood Microbiology 2024; 119: 104447 doi: 10.1016/j.fm.2023.104447
168
Linying Chen, Pengfei Di, Junxi Feng, Duofu Chen, Niu Li, Yazi Li. Impact of dust deposition on the growth of marine autotrophic and heterotrophic microorganisms: Evidence from the South China SeaMarine Pollution Bulletin 2023; 197: 115749 doi: 10.1016/j.marpolbul.2023.115749
169
H. Modra, M. Bartos, P. Hribova, V. Ulmann, D. Hubelova, O. Konecny, M. Gersl, J. Kudelka, D. Voros, I. Pavlik. Detection of mycobacteria in the environment of the Moravian Karst (Bull Rock Cave and the relevant water catchment area): the impact of water sediment, earthworm castings and bat guanoVeterinární medicína 2017; 62(3): 153 doi: 10.17221/126/2016-VETMED
170
Chong Liu, Tongjun Guo, Yongxing Chen, Qinghui Meng, Changxiong Zhu, Hongkun Huang. Physicochemical characteristics of stored cattle manure affect methane emissions by inducing divergence of methanogens that have different interactions with bacteriaAgriculture, Ecosystems & Environment 2018; 253: 38 doi: 10.1016/j.agee.2017.10.020
171
Qian Fu, Jin-long Lai, Xiao-hui Ji, Zhong-xu Luo, Guo Wu, Xue-gang Luo. Alterations of the rhizosphere soil microbial community composition and metabolite profiles of Zea mays by polyethylene-particles of different molecular weightsJournal of Hazardous Materials 2022; 423: 127062 doi: 10.1016/j.jhazmat.2021.127062
172
Jie Li, Qi Chen, Si Zhang, Hui Huang, Jian Yang, Xin-Peng Tian, Li-Juan Long, Raymond Schuch. Highly Heterogeneous Bacterial Communities Associated with the South China Sea Reef Corals Porites lutea, Galaxea fascicularis and Acropora milleporaPLoS ONE 2013; 8(8): e71301 doi: 10.1371/journal.pone.0071301
173
Rivia Kumala Dewi, Suranto ., Ari Susilowati, Aris Tri Wahyudi. Molecular Identification of 16S rDNA and Polyketide Synthase Genes of Antagonist Bacteria against Xanthomonas oryzae Pathovar oryzae from Rice PhyllosphereAsian Journal of Plant Pathology 2015; 9(4): 148 doi: 10.3923/ajppaj.2015.148.157
174
Tomasz Dulski, Krzysztof Kozłowski, Slawomir Ciesielski. Habitat and seasonality shape the structure of tench (Tinca tinca L.) gut microbiomeScientific Reports 2020; 10(1) doi: 10.1038/s41598-020-61351-1
175
Wenbo Zeng, Zhongqiu Li, Tiange Jiang, Donghui Cheng, Limin Yang, Tian Hang, Lei Duan, Dan Zhu, Yuan Fang, Yi Zhang. Identification of Bacterial Communities and Tick-Borne Pathogens in Haemaphysalis spp. Collected from Shanghai, ChinaTropical Medicine and Infectious Disease 2022; 7(12): 413 doi: 10.3390/tropicalmed7120413
176
Guojie Cui, Jun Li, Zhaoming Gao, Yong Wang. Spatial variations of microbial communities in abyssal and hadal sediments across the Challenger DeepPeerJ 2019; 7: e6961 doi: 10.7717/peerj.6961
177
Henrik Christensen, Jasmine Andersson, Steffen Lynge Jørgensen, Josef Korbinian Vogt. Introduction to Bioinformatics in MicrobiologyLearning Materials in Biosciences 2023; : 153 doi: 10.1007/978-3-031-45293-2_8
178
Xingbing Lu, Li Xiong, Xi Zheng, Qiuju Yu, Yuling Xiao, Yi Xie. Structure of gut microbiota and characteristics of fecal metabolites in patients with lung cancerFrontiers in Cellular and Infection Microbiology 2023; 13 doi: 10.3389/fcimb.2023.1170326
179
Richard William McLaughlin, MinMin Chen, JinSong Zheng, QingZhong Zhao, Ding Wang. Analysis of the bacterial diversity in the fecal material of the endangered Yangtze finless porpoise, Neophocaena phocaenoides asiaeorientalisMolecular Biology Reports 2012; 39(5): 5669 doi: 10.1007/s11033-011-1375-0
180
H Kim, S Gordon, R Dionne. Genome‐wide approaches (GWA) in oral and craniofacial diseases researchOral Diseases 2013; 19(2): 111 doi: 10.1111/j.1601-0825.2012.01962.x
181
Jianzhong Hu, Vincent Raikhel, Kalpana Gopalakrishnan, Heriberto Fernandez-Hernandez, Luca Lambertini, Fabiana Manservisi, Laura Falcioni, Luciano Bua, Fiorella Belpoggi, Susan L.Teitelbaum, Jia Chen. Effect of postnatal low-dose exposure to environmental chemicals on the gut microbiome in a rodent modelMicrobiome 2016; 4(1) doi: 10.1186/s40168-016-0173-2
182
Megan L. Shepherd, William S. Swecker, Roderick V. Jensen, Monica A. Ponder. Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene ampliconsFEMS Microbiology Letters 2012; 326(1): 62 doi: 10.1111/j.1574-6968.2011.02434.x
183
Douglas B Rusch, Jie Huang, Chris Hemmerich, Matthew W Hahn. High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITSISME Communications 2022; 2(1) doi: 10.1038/s43705-022-00183-8
184
Meredith B. Nevers, Muruleedhara N. Byappanahalli, Cindy H. Nakatsu, Julie L. Kinzelman, Mantha S. Phanikumar, Dawn A. Shively, Ashley M. Spoljaric. Interaction of bacterial communities and indicators of water quality in shoreline sand, sediment, and water of Lake MichiganWater Research 2020; 178: 115671 doi: 10.1016/j.watres.2020.115671
185
Fengdi Zhang, Junyang Yang, Yongjia Ji, Meiyan Sun, Jiayin Shen, Jianjun Sun, Jiangrong Wang, Li Liu, Yinzhong Shen, Renfang Zhang, Jun Chen, Hongzhou Lu. Gut Microbiota Dysbiosis Is Not Independently Associated With Neurocognitive Impairment in People Living With HIVFrontiers in Microbiology 2019; 9 doi: 10.3389/fmicb.2018.03352
186
Zhaojun Li, Xingguang Zhang, Haijie Wu, Zhiling Ma, Xikun Liu, Jie Ma, Dongming Zhang, Li Sheng, Xiaoguang Chen, Sen Zhang. Hydrangea paniculata coumarins attenuate experimental membranous nephritis by bidirectional interactions with the gut microbiotaCommunications Biology 2023; 6(1) doi: 10.1038/s42003-023-05581-9
187
Huajun Zheng, Hong Liang, Yuezhu Wang, Maohua Miao, Tao Shi, Fen Yang, Enuo Liu, Wei Yuan, Zai-Si Ji, De-Kun Li, Paul J Planet. Altered Gut Microbiota Composition Associated with Eczema in InfantsPLOS ONE 2016; 11(11): e0166026 doi: 10.1371/journal.pone.0166026
188
Quan Ma, Yinsen Qian, Qiaoqiao Yu, Yifan Cao, Rongrong Tao, Min Zhu, Jinfeng Ding, Chunyan Li, Wenshan Guo, Xinkai Zhu. Controlled-release nitrogen fertilizer application mitigated N losses and modified microbial community while improving wheat yield and N use efficiencyAgriculture, Ecosystems & Environment 2023; 349: 108445 doi: 10.1016/j.agee.2023.108445
189
Tiecheng Wu, Jianyong Liang, Tao Wang, Ruoyang Zhao, Yuejun Ma, Yulin Gao, Shengguo Zhao, Guoshun Chen, Bin Liu. Cysteamine-supplemented diet for cashmere goats: A potential strategy to inhibit rumen biohydrogenation and enhance plasma antioxidant capacityFrontiers in Veterinary Science 2022; 9 doi: 10.3389/fvets.2022.997091
190
Fabiana de Melo, Cássio do Nascimento, Diogo Onofre Souza, Rubens F. de Albuquerque. Identification of oral bacteria on titanium implant surfaces by 16S rDNA sequencingClinical Oral Implants Research 2017; 28(6): 697 doi: 10.1111/clr.12865
191
Pei‐Chang Lee, Yun‐Chen Hsieh, Teh‐Ia Huo, Ueng‐Cheng Yang, Chao‐Hsiung Lin, Chung‐Pin Li, Yi‐Hsiang Huang, Ming‐Chih Hou, Han‐Chieh Lin, Kuei‐Chuan Lee. Active Vitamin D3 Treatment Attenuated Bacterial Translocation via Improving Intestinal Barriers in Cirrhotic RatsMolecular Nutrition & Food Research 2021; 65(3) doi: 10.1002/mnfr.202000937
192
Vojtech Kouba, Juan Camilo Gerlein, Andrea Benakova, Marco Antonio Lopez Marin, Eva Rysava, Dana Vejmelkova, Jan Bartacek. Adaptation of flocculent anammox culture to low temperature by cold shock: long-term response of the microbial populationEnvironmental Technology 2022; 43(28): 4403 doi: 10.1080/09593330.2021.1950842
193
Sookyung Kang, Kyung-Suk Cho. Microbial Metagenome of Airborne Particulate Matter: Methodology, Characteristics, and Influencing ParametersMicrobiology and Biotechnology Letters 2022; 50(2): 165 doi: 10.48022/mbl.2112.12005
194
Deepak Saxena, Yihong Li, Liying Yang, Zhiheng Pei, Michael Poles, William R. Abrams, Daniel Malamud. Human Microbiome and HIV/AIDSCurrent HIV/AIDS Reports 2012; 9(1): 44 doi: 10.1007/s11904-011-0103-7
195
Chunming Liu, Zhenfu Yang, Pengfei He, Shahzad Munir, Yixin Wu, Honhing Ho, Yueqiu He. Deciphering the bacterial and fungal communities in clubroot-affected cabbage rhizosphere treated with Bacillus Subtilis XF-1Agriculture, Ecosystems & Environment 2018; 256: 12 doi: 10.1016/j.agee.2018.01.001
196
Sylvain François-Étienne, Leroux Nicolas, Normandeau Eric, Custodio Jaqueline, Mercier Pierre-Luc, Bouslama Sidki, Holland Aleicia, Barroso Danilo, Val Adalberto Luis, Derome Nicolas. Important role of endogenous microbial symbionts of fish gills in the challenging but highly biodiverse Amazonian blackwatersNature Communications 2023; 14(1) doi: 10.1038/s41467-023-39461-x
197
Shengqi Wang, Xiaohong Zheng, Jin Ye, Zongke Sun, Ziguang Chen, Guoqing Cao, Yin Zhang, Fangxia Shen, Caroline X. Gao, Hua Qian. Impact of climate zones and seasons on indoor airborne microbial communities: Insights from a comprehensive analysisScience of The Total Environment 2024; 926: 171879 doi: 10.1016/j.scitotenv.2024.171879
198
Alissa S. Hanshew, Charles J. Mason, Kenneth F. Raffa, Cameron R. Currie. Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communitiesJournal of Microbiological Methods 2013; 95(2): 149 doi: 10.1016/j.mimet.2013.08.007
199
Naraporn Somboonna, Anunchai Assawamakin, Alisa Wilantho, Sithichoke Tangphatsornruang, Sissades Tongsima. Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, ThailandBMC Genomics 2012; 13(S7) doi: 10.1186/1471-2164-13-S7-S29
200
M. Kaevska, A. Lorencova, P. Videnska, K. Sedlar, I. Provaznik, M. Trckova. Effect of sodium humate and zinc oxide used in prophylaxis of post-weaning diarrhoea on faecal microbiota composition in weaned pigletsVeterinární medicína 2016; 61(6): 328 doi: 10.17221/54/2016-VETMED
201
Mingyue Li, Tiezhu Mi, Zhigang Yu, Manman Ma, Yu Zhen. Planktonic Bacterial and Archaeal Communities in an Artificially Irrigated Estuarine Wetland: Diversity, Distribution, and Responses to Environmental ParametersMicroorganisms 2020; 8(2): 198 doi: 10.3390/microorganisms8020198
202
Yu-Peng Hsieh, Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang. 16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA SequencesFrontiers in Bioinformatics 2022; 2 doi: 10.3389/fbinf.2022.905489
203
Peilin Cao, Yifan Zhang, Guangyan Dong, Hongkun Wu, Yuxiang Yang, Yi Liu. Clinical Oral Condition Analysis and the Influence of Highly Active Antiretroviral Therapy on Human Salivary Microbial Community Diversity in HIV-Infected/AIDS PatientsFrontiers in Cellular and Infection Microbiology 2022; 12 doi: 10.3389/fcimb.2022.937039
204
Tao Wen, Penghao Xie, Hongwei Liu, Ting Liu, Mengli Zhao, Shengdie Yang, Guoqing Niu, Lauren Hale, Brajesh K. Singh, George A. Kowalchuk, Qirong Shen, Jun Yuan. Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt diseaseNature Communications 2023; 14(1) doi: 10.1038/s41467-023-40184-2
205
Yitian Shi, Zian Tong, Yu Zhang, Misi Si, Fuming He. Microbial profiles of peri‐implant mucositis and peri‐implantitis: Submucosal microbial dysbiosis correlates with disease severityClinical Oral Implants Research 2022; 33(2): 172 doi: 10.1111/clr.13880
206
Geng-Hao Liu, Hsuan-Miao Liu, Yu-Sheng Chen, Tzung-Yan Lee. Effect of Electroacupuncture in Mice with Dextran Sulfate Sodium-Induced Colitis and the Influence of Gut MicrobiotaEvidence-Based Complementary and Alternative Medicine 2020; 2020: 1 doi: 10.1155/2020/2087903
207
Fan Wang, Haifang Liu, Fei Liu, Wanguang Chen. Effects of Chinese yam ( Dioscorea oppositifolia L .) dietary supplementation on intestinal microflora, digestive enzyme activity and immunity in rainbow trout ( Oncorhynchus mykiss ) Aquaculture Research 2020; 51(11): 4698 doi: 10.1111/are.14815
208
Ze Ren, Hongkai Gao, Wei Luo, James J. Elser. Bacterial communities in surface and basal ice of a glacier terminus in the headwaters of Yangtze River on the Qinghai–Tibet PlateauEnvironmental Microbiome 2022; 17(1) doi: 10.1186/s40793-022-00408-2
209
Yeling Zhou, Ying Zhou, Jing Wan, Qiujin Zhu, Linggao Liu, Sha Gu, Hongying Li. Effects of sorbitol-mediated curing on the physicochemical properties and bacterial community composition of loin ham during fermentation and ripening stagesFood Chemistry: X 2023; 17: 100543 doi: 10.1016/j.fochx.2022.100543
210
Lipin Ren, Xiangyan Zhang, Fengqin Yang, Ngando Fernand Jocelin, Yanjie Shang, Qing Wang, Zhuoying Liu, Yadong Guo. Effects of heat tolerance on the gut microbiota of Sarcophaga peregrina (Diptera: Sarcophagidae) and impacts on the life history traitsParasites & Vectors 2023; 16(1) doi: 10.1186/s13071-023-05973-0
211
Xuelei Zhang, Zhenping Hou, Xu Tian, Duanqin Wu, Qiuzhong Dai. Multi-omics reveals host metabolism associated with the gut microbiota composition in mice with dietary ε-polylysineFood & Function 2022; 13(7): 4069 doi: 10.1039/D1FO04227K
212
Xiaochi An, Zaifeng Wang, Kairui Jiao, Xiaoming Teng, Ruirong Zhou, Min Xu, Bin Lian. Bacterial community characteristics in the rhizosphere of Suaeda glauca versus bulk soil in coastal silt soil modified by sea-sand and their implicationsFrontiers in Marine Science 2023; 9 doi: 10.3389/fmars.2022.1001449
213
Petra Videnska, Md. Masudur Rahman, Marcela Faldynova, Vladimir Babak, Marta Elsheimer Matulova, Estella Prukner-Radovcic, Ivan Krizek, Sonja Smole-Mozina, Jasna Kovac, Ama Szmolka, Bela Nagy, Karel Sedlar, Darina Cejkova, Ivan Rychlik, Jose Luis Balcazar. Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and SloveniaPLoS ONE 2014; 9(10): e110076 doi: 10.1371/journal.pone.0110076
214
Marwa M. Bakri. Molecular characterization and prevalence of Bacillus species isolated from Saudi hospitalsJournal of Taibah University Medical Sciences 2023; 18(3): 444 doi: 10.1016/j.jtumed.2022.10.016
215
Ian Ganly, Liying Yang, Rachel A. Giese, Yuhan Hao, Carlos W. Nossa, Luc G.T. Morris, Matthew Rosenthal, Jocelyn Migliacci, Dervla Kelly, Wenzhi Tseng, Jiyuan Hu, Huilin Li, Stuart Brown, Zhiheng Pei. Periodontal pathogens are a risk factor of oral cavity squamous cell carcinoma, independent of tobacco and alcohol and human papillomavirusInternational Journal of Cancer 2019; 145(3): 775 doi: 10.1002/ijc.32152
216
Anna Kopf, Boyke Bunk, Sina M. Coldewey, Florian Gunzer, Thomas Riedel, Percy Schröttner. Identification and Antibiotic Profiling of Wohlfahrtiimonas chitiniclastica, an Underestimated Human PathogenFrontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.712775
217
A. S. Nizkorodova, E. R. Mal’tseva, Zh. A. Berdygulova, D. A. Naizabaeva, S. A. Kuatbekova, A. V. Zhigailov, N. Abdolla, A. S. Mashzhan, I. A. Akhmetollaev, Yu. A. Skiba, S. M. Mamadaliev. Real-Time PCR Detection of <i>Bacillus anthracis</i> by Lambda_Ba03 Prophage GenesProblems of Particularly Dangerous Infections 2022; (3): 170 doi: 10.21055/0370-1069-2022-3-170-172
218
Cheng Zhang, Ze Ren. The role of subsurface ice in sustaining bacteria in continental and maritime glaciersScience of The Total Environment 2023; 896: 165324 doi: 10.1016/j.scitotenv.2023.165324
219
Ivan Kushkevych, Jozef Kováč, Monika Vítězová, Tomáš Vítěz, Milan Bartoš. The diversity of sulfate-reducing bacteria in the seven bioreactorsArchives of Microbiology 2018; 200(6): 945 doi: 10.1007/s00203-018-1510-6
220
Shoujun Chen, Kaiyue Qian, Guanghui Zhang, Min Zhang. Akkermansia muciniphila and its outer membrane protein Amuc_1100 prophylactically attenuate 5-fluorouracil-induced intestinal mucositisBiochemical and Biophysical Research Communications 2022; 614: 34 doi: 10.1016/j.bbrc.2022.04.135
221
Marco Meola, Etienne Rifa, Noam Shani, Céline Delbès, Hélène Berthoud, Christophe Chassard. DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy productsBMC Genomics 2019; 20(1) doi: 10.1186/s12864-019-5914-8
222
AvinashBhat Balekuduru, Jayakanthan Kabeerdoss, BalakrishnanSiddartha Ramakrishna, Srinivasan Pugazhendhi, Prabavathi Devaraj, Ruchika Goel, AmitKumar Dutta, Debashish Danda. Alterations in fecal microbiota in patients with inflammatory bowel disease and enteropathic arthropathyGastroenterology, Hepatology and Endoscopy Practice 2021; 1(3): 103 doi: 10.4103/ghep.ghep_30_20
223
A. M. Teles, M. C. Manso, S. Loureiro, R. Silva, I. G. C. Madeira, C. Pina, J. M. Cabeda. Effectiveness of two intracanal dressings in adult Portuguese patients: a qPCR and anaerobic culture assessmentInternational Endodontic Journal 2014; 47(1): 32 doi: 10.1111/iej.12122
224
Yang Sun, Yingfei Ma, Ping Lin, Yi-Wei Tang, Liying Yang, Yinzhong Shen, Renfan Zhang, Li Liu, Jun Cheng, Jiashen Shao, Tangkai Qi, Yan Tang, Rentian Cai, Liqian Guan, Bin Luo, Meiyan Sun, Ben Li, Zhiheng Pei, Hongzhou Lu. Fecal bacterial microbiome diversity in chronic HIV-infected patients in ChinaEmerging Microbes & Infections 2016; 5(1): 1 doi: 10.1038/emi.2016.25
225
Ja-Young Lee, Hidehisa Shimizu, Masahito Hagio, Satoru Fukiya, Masamichi Watanabe, Yasutake Tanaka, Ga-Hyun Joe, Hitoshi Iwaya, Reika Yoshitsugu, Keidai Kikuchi, Misaki Tsuji, Nanako Baba, Takuma Nose, Koji Tada, Taketo Hanai, Shota Hori, Akari Takeuchi, Yumiko Furukawa, Bungo Shirouchi, Masao Sato, Tadasuke Ooka, Yoshitoshi Ogura, Tetsuya Hayashi, Atsushi Yokota, Satoshi Ishizuka. 12α-Hydroxylated bile acid induces hepatic steatosis with dysbiosis in ratsBiochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 2020; 1865(12): 158811 doi: 10.1016/j.bbalip.2020.158811
226
Lingrui Liu, Lang Cheng, Kun Liu, Taobing Yu, Qi Liu, Zhihui Gong, Zhandong Cai, Junjie Liu, Xueqiang Zhao, Hai Nian, Qibin Ma, Tengxiang Lian. Transgenic soybean of GsMYB10 shapes rhizosphere microbes to promote resistance to aluminum (Al) toxicityJournal of Hazardous Materials 2023; 455: 131621 doi: 10.1016/j.jhazmat.2023.131621
227
Jing Xu, Yong Kang, Yan Zhong, Wencan Ye, Tianle Sheng, Qingming Wang, Jifu Zheng, Qiuyue Yang, Ping Yi, Zhenjiang Li. Alteration of gut microbiome and correlated amino acid metabolism are associated with acute myelocytic leukemia carcinogenesisCancer Medicine 2023; 12(15): 16431 doi: 10.1002/cam4.6283
228
Tong Zhang, Ming-Fei Shao, Lin Ye. 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plantsThe ISME Journal 2012; 6(6): 1137 doi: 10.1038/ismej.2011.188
229
Hanshuang Zhao, Zenghu Zhang, Shailesh Nair, Jiulong Zhao, Shanli Mou, Kuidong Xu, Yongyu Zhang. Vertically Exported Phytoplankton (< 20 µm) and Their Correlation Network With Bacterioplankton Along a Deep-Sea SeamountFrontiers in Marine Science 2022; 9 doi: 10.3389/fmars.2022.862494
230
Jun Mu, Yuxia Wang, Xia Cui, Qiao Yang, Dayong Zhao. Ubiquitous flocculation activity and flocculation production basis of the conglutination mud from Ruditapes philippinarum along the coast of ChinaPLOS ONE 2021; 16(11): e0256013 doi: 10.1371/journal.pone.0256013
231
Ping Dong, Jing-jing Feng, Dong-yong Yan, Yu-jing Lyu, Xiu Xu. Early-life gut microbiome and cow’s milk allergy- a prospective case - control 6-month follow-up studySaudi Journal of Biological Sciences 2018; 25(5): 875 doi: 10.1016/j.sjbs.2017.11.051
232
Ajay Prakash, Brandilyn A. Peters, Emilia Cobbs, Dia Beggs, Heesun Choi, Huilin Li, Richard B. Hayes, Jiyoung Ahn. Tobacco Smoking and the Fecal Microbiome in a Large, Multi-ethnic CohortCancer Epidemiology, Biomarkers & Prevention 2021; 30(7): 1328 doi: 10.1158/1055-9965.EPI-20-1417
233
Isabella M. Cattadori, Aswathy Sebastian, Han Hao, Robab Katani, Istvan Albert, Kirsten E. Eilertson, Vivek Kapur, Ashutosh Pathak, Susan Mitchell, Emmanuel Serrano Ferron. Impact of Helminth Infections and Nutritional Constraints on the Small Intestine MicrobiotaPLOS ONE 2016; 11(7): e0159770 doi: 10.1371/journal.pone.0159770
234
Liying Yang, Yuhan Hao, Jiyuan Hu, Dervla Kelly, Huilin Li, Stuart Brown, Carley Tasker, Natalie E. Roche, Theresa L. Chang, Zhiheng Pei. Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black womenEmerging Microbes & Infections 2019; 8(1): 197 doi: 10.1080/22221751.2018.1563458
235
Nicoletta Makowska-Zawierucha, Joanna Mokracka, Marcelina Małecka, Piotr Balazy, Maciej Chełchowski, Dariusz Ignatiuk, Krzysztof Zawierucha. Quantification of class 1 integrons and characterization of the associated gene cassettes in the high Arctic – Interplay of humans and glaciers in shaping the aquatic resistomeEcological Indicators 2022; 145: 109633 doi: 10.1016/j.ecolind.2022.109633
236
Li Zhang, Jin-long Lai, Yu Zhang, Xue-gang Luo, Zhan-guo Li. Degradation of Uranium-Contaminated Decontamination Film by UV Irradiation and Microbial BiodegradationMicrobial Ecology 2022; 84(2): 439 doi: 10.1007/s00248-021-01862-0
237
Han Yu, Chao Liu, Fenghua Zhang, Jianfei Wang, Jun Han, Xin Zhou, Yueqiang Wen, Tao Shen. Efficacy of Zhuyu Pill Intervention in a Cholestasis Rat Model: Mutual Effects on Fecal Metabolism and Microbial DiversityFrontiers in Pharmacology 2021; 12 doi: 10.3389/fphar.2021.695035
238
Dong-sheng BAI. Soil Bacteria and Metabolites Stimulated by Sulfur Cycles in Vertical Soil Profiles Under Different Afforestation Conditions in Coal Mining AreasSSRN Electronic Journal 2022;  doi: 10.2139/ssrn.4055107
239
Marija Kaevska, Petra Videnska, Karel Sedlar, Iva Slana. Seasonal changes in microbial community composition in river water studied using 454-pyrosequencingSpringerPlus 2016; 5(1) doi: 10.1186/s40064-016-2043-6
240
Jing Wu, Brandilyn A Peters, Christine Dominianni, Yilong Zhang, Zhiheng Pei, Liying Yang, Yingfei Ma, Mark P Purdue, Eric J Jacobs, Susan M Gapstur, Huilin Li, Alexander V Alekseyenko, Richard B Hayes, Jiyoung Ahn. Cigarette smoking and the oral microbiome in a large study of American adultsThe ISME Journal 2016; 10(10): 2435 doi: 10.1038/ismej.2016.37
241
Shu‐guang Li, Xiu‐wen Zhou, Peng‐fei Li, Kui Han, Wei Li, Zhi‐feng Li, Zhi‐hong Wu, Yue‐zhong Li. The existence and diversity of myxobacteria in lake mud – a previously unexplored myxobacteria habitatEnvironmental Microbiology Reports 2012; 4(6): 587 doi: 10.1111/j.1758-2229.2012.00373.x
242
Aftab Ahmad, Wanwei Yang, Guofang Chen, Muhammad Shafiq, Sundus Javed, Syed Shujaat Ali Zaidi, Ramla Shahid, Chao Liu, Habib Bokhari, Jonathan Jacobs. Analysis of gut microbiota of obese individuals with type 2 diabetes and healthy individualsPLOS ONE 2019; 14(12): e0226372 doi: 10.1371/journal.pone.0226372
243
Kristi Biswas, Michael W. Taylor, Susan J. Turner. dsrAB-based analysis of sulphate-reducing bacteria in moving bed biofilm reactor (MBBR) wastewater treatment plantsApplied Microbiology and Biotechnology 2014; 98(16): 7211 doi: 10.1007/s00253-014-5769-5
244
Yuhan Hao, Zhiheng Pei, Stuart M. Brown. The Human MicrobiomeMethods in Microbiology 2017; 44: 1 doi: 10.1016/bs.mim.2017.08.002
245
Huimin Shi, Lanxiang Lu, Jianren Ye, Lina Shi. Effects of Two Bacillus Velezensis Microbial Inoculants on the Growth and Rhizosphere Soil Environment of Prunus davidianaInternational Journal of Molecular Sciences 2022; 23(21): 13639 doi: 10.3390/ijms232113639
246
Nicoletta Makowska, Krzysztof Zawierucha, Paulina Nadobna, Kinga Piątek-Bajan, Anna Krajewska, Jagoda Szwedyk, Patryk Iwasieczko, Joanna Mokracka, Ryszard Koczura. Occurrence of integrons and antibiotic resistance genes in cryoconite and ice of Svalbard, Greenland, and the Caucasus glaciersScience of The Total Environment 2020; 716: 137022 doi: 10.1016/j.scitotenv.2020.137022
247
Vit Ulmann, Helena Modrá, Vladimir Babak, Ross Tim Weston, Ivo Pavlik. Recovery of Mycobacteria from Heavily Contaminated Environmental MatricesMicroorganisms 2021; 9(10): 2178 doi: 10.3390/microorganisms9102178
248
Joohon Sung, Hang A. Park, Soo Ji Lee. Twin Research for Everyone2022; : 649 doi: 10.1016/B978-0-12-821514-2.00010-6
249
Pei-Chang Lee, Tien-En Chang, Yen-Po Wang, Kuei-Chuan Lee, Yi-Tsung Lin, Jen-Jie Chiou, Chi-Wei Huang, Ueng-Cheng Yang, Fen-Yau Li, Hui-Chun Huang, Chun-Ying Wu, Yi-Hsiang Huang, Ming-Chih Hou. Alteration of gut microbial composition associated with the therapeutic efficacy of fecal microbiota transplantation in Clostridium difficile infectionJournal of the Formosan Medical Association 2022; 121(9): 1636 doi: 10.1016/j.jfma.2021.11.001
250
Melissa A. Kinnebrew, Yeon Joo Lee, Robert R. Jenq, Lauren Lipuma, Eric R. Littmann, Asia Gobourne, Daniel No, Marcel van den Brink, Eric G. Pamer, Ying Taur, Vassiliki A. Boussiotis. Early Clostridium difficile Infection during Allogeneic Hematopoietic Stem Cell TransplantationPLoS ONE 2014; 9(3): e90158 doi: 10.1371/journal.pone.0090158
251
Petra Videnska, Frantisek Sisak, Hana Havlickova, Marcela Faldynova, Ivan Rychlik. Influence of Salmonella enterica serovar Enteritidis infection on the composition of chicken cecal microbiotaBMC Veterinary Research 2013; 9(1) doi: 10.1186/1746-6148-9-140
252
Haonan Wu, Yutong Xing, Haijian Sun, Xiuguang Mao. Gut microbial diversity in two insectivorous bats: Insights into the effect of different sampling sourcesMicrobiologyOpen 2019; 8(4) doi: 10.1002/mbo3.670
253
Bingyan Sun, Menghong Hu, Xukai Lan, Khor Waiho, Xiaohui Lv, Chaosong Xu, Youji Wang. Nano-titanium dioxide exacerbates the harmful effects of perfluorooctanoic acid on the health of musselsEnvironment International 2024; 187: 108681 doi: 10.1016/j.envint.2024.108681
254
Haiying Ren, Hao Guo, Mohammad Shafiqul Islam, Haitham E. M. Zaki, Zhenshuo Wang, Hongyan Wang, Xingjiang Qi, Junning Guo, Li Sun, Qi Wang, Bin Li, Gang Li, Khlode S. A. Radwan. Improvement effect of biochar on soil microbial community structure and metabolites of decline disease bayberryFrontiers in Microbiology 2023; 14 doi: 10.3389/fmicb.2023.1154886
255
Ze Ren, Shengkui Cao, Tao Chen, Cheng Zhang, Jinlei Yu. Bacterial functional redundancy and carbon metabolism potentials in soil, sediment, and water of thermokarst landscapes across the Qinghai-Tibet Plateau: Implications for the fate of permafrost carbonScience of The Total Environment 2022; 852: 158340 doi: 10.1016/j.scitotenv.2022.158340
256
Marija Kaevska, Petra Videnska, Karel Sedlar, Iva Bartejsova, Alena Kralova, Iva Slana. Faecal bacterial composition in dairy cows shedding Mycobacterium avium subsp. paratuberculosis in faeces in comparison with nonshedding cowsCanadian Journal of Microbiology 2016; 62(6): 538 doi: 10.1139/cjm-2015-0814
257
Yi Zhang, Jie Li, Xuhua Cheng, Yinfeng Luo, Zhimao Mai, Si Zhang. Community differentiation of bacterioplankton in the epipelagic layer in the South China SeaEcology and Evolution 2018; 8(10): 4932 doi: 10.1002/ece3.4064
258
Xinwen Dong, Lvfei Deng, Yaguang Su, Xiaofeng Han, Sanqiao Yao, Weidong Wu, Jia Cao, Linqiang Tian, Yichun Bai, Guizhi Wang, Wenjie Ren. Curcumin alleviates traumatic brain injury induced by gas explosion through modulating gut microbiota and suppressing the LPS/TLR4/MyD88/NF-κB pathwayEnvironmental Science and Pollution Research 2023; 31(1): 1094 doi: 10.1007/s11356-023-30708-0
259
Carlos Wolfgang Nossa, Liying Yang, Zhiheng Pei. Encyclopedia of Metagenomics2013; : 1 doi: 10.1007/978-1-4614-6418-1_83-5
260
Ines Yang, Sandra Nell, Sebastian Suerbaum. Survival in hostile territory: the microbiota of the stomachFEMS Microbiology Reviews 2013; 37(5): 736 doi: 10.1111/1574-6976.12027
261
Débora Toledo Ramos, Márcio Luís Busi da Silva, Carlos Wolfgang Nossa, Pedro J. J. Alvarez, Henry Xavier Corseuil. Assessment of microbial communities associated with fermentative–methanogenic biodegradation of aromatic hydrocarbons in groundwater contaminated with a biodiesel blend (B20)Biodegradation 2014; 25(5): 681 doi: 10.1007/s10532-014-9691-4
262
Wei Dong, Hongyu Liu, Zhoushen Ning, Zijun Bian, Luxue Zeng, Dibing Xie. Inoculation with Bacillus cereus DW019 Modulates Growth, Yield and Rhizospheric Microbial Community of Cherry TomatoAgronomy 2023; 13(6): 1458 doi: 10.3390/agronomy13061458
263
Françoise Botterel, Cécile Angebault, Marie-Elisabeth Bougnoux. Le mycobiome humain : actualités et perspectivesRevue Francophone des Laboratoires 2015; 2015(469): 67 doi: 10.1016/S1773-035X(15)72823-6
264
Xiu‐wen Zhou, Shu‐guang Li, Wei Li, De‐ming Jiang, Kui Han, Zhi‐hong Wu, Yue‐zhong Li. Myxobacterial community is a predominant and highly diverse bacterial group in soil nichesEnvironmental Microbiology Reports 2014; 6(1): 45 doi: 10.1111/1758-2229.12107
265
Pei-Chang Lee, Kuei-Chuan Lee, Tsung-Chieh Yang, Hsiao-Sheng Lu, Tsung-Yi Cheng, Yu-Jen Chen, Jen-Jie Chiou, Chi-Wei Huang, Ueng-Cheng Yang, Elise Chia-Hui Tan, Shih-Hsuan Chou, Yu-Lun Kuo, Bernd Schnabl, Yi-Hsiang Huang, Ming-Chih Hou. Sarcopenia-related gut microbial changes are associated with the risk of complications in people with cirrhosisJHEP Reports 2023; 5(1): 100619 doi: 10.1016/j.jhepr.2022.100619
266
Steven Z. Josefowicz, Rachel E. Niec, Hye Young Kim, Piper Treuting, Takatoshi Chinen, Ye Zheng, Dale T. Umetsu, Alexander Y. Rudensky. Extrathymically generated regulatory T cells control mucosal TH2 inflammationNature 2012; 482(7385): 395 doi: 10.1038/nature10772
267
Yu-Chieh Cheng, Je-Ruei Liu. Effect of Lactobacillus rhamnosus GG on Energy Metabolism, Leptin Resistance, and Gut Microbiota in Mice with Diet-Induced ObesityNutrients 2020; 12(9): 2557 doi: 10.3390/nu12092557
268
Xiang Zeng, Zhijun Zeng, Qihua Wang, Wanting Liang, Yufeng Guo, Xia Huo. Alterations of the gut microbiota and metabolomics in children with e-waste lead exposureJournal of Hazardous Materials 2022; 434: 128842 doi: 10.1016/j.jhazmat.2022.128842
269
Yan Zhang, Chuandong Jiang, Yangyang Li, Jingguo Sun, Zhenguo Chen, Qiang Zhang, Guangwei Sun. Screening, identification, and mechanism analysis of starch-degrading bacteria during curing process in tobacco leafFrontiers in Bioengineering and Biotechnology 2024; 12 doi: 10.3389/fbioe.2024.1332113
270
Hsiang-Yi Hsu, Fang-Chi Chang, Yu-Bin Wang, Shu-Hwa Chen, Ya-Po Lin, Chung-Yen Lin, Yu-San Han. Revealing the compositions of the intestinal microbiota of three Anguillid eel species using 16S rDNA sequencingAquaculture Research 2018; 49(7): 2404 doi: 10.1111/are.13700
271
Xiangyu Fan, Ying Zhu, Pengfei Gu, Yumei Li, Guiqing Xiao, Dongxue Song, Yiwei Wang, Rong He, Huajun Zheng, Qiang Li. Bacterial community compositions of propylene oxide saponification wastewater treatment plantsRSC Advances 2017; 7(36): 22347 doi: 10.1039/C6RA27808F
272
Tsai-Ling Lauderdale, Ming-Chia Hsu, Jung-Jung Mu, Feng-Yee Chang, Jui-Fen Lai, Mei-Chen Tan, Hui-Yin Wang, Shan-Chwen Chang. NDM-1–producing Acinetobacter soli from TaiwanDiagnostic Microbiology and Infectious Disease 2014; 80(2): 168 doi: 10.1016/j.diagmicrobio.2014.06.008
273
Xiyu Zhang, Heting Wang, Sihan Peng, Jian Kang, Ziyan Xie, Ruobing Tang, Yiqian Xing, Yuchi He, Haipo Yuan, Chunguang Xie, Ya Liu. Effect of microplastics on nasal and intestinal microbiota of the high-exposure populationFrontiers in Public Health 2022; 10 doi: 10.3389/fpubh.2022.1005535
274
C. Liu, X. H. Li, Y. X. Chen, Z. H. Cheng, Q. H. Duan, Q. H. Meng, X. P. Tao, B. Shang, H. M. Dong. Age-Related Response of Rumen Microbiota to Mineral Salt and Effects of Their Interactions on Enteric Methane Emissions in CattleMicrobial Ecology 2017; 73(3): 590 doi: 10.1007/s00248-016-0888-4
275
M.M. Nascimento, E. Zaura, A. Mira, N. Takahashi, J.M. ten Cate. Second Era of OMICS in Caries Research: Moving Past the Phase of DisillusionmentJournal of Dental Research 2017; 96(7): 733 doi: 10.1177/0022034517701902
276
Karin Schreiber, Theodore G. Karrison, Steven P. Wolf, Kazuma Kiyotani, Madeline Steiner, Eric R. Littmann, Eric G. Pamer, Thomas Kammertoens, Hans Schreiber, Matthias Leisegang. Impact of TCR Diversity on the Development of Transplanted or Chemically Induced TumorsCancer Immunology Research 2020; 8(2): 192 doi: 10.1158/2326-6066.CIR-19-0567
277
Yulin Nie, Xu Yang, Maoling Yin, Zhen Wang, Qiang Wang, Bin Dong, Sanping Zhao. Simulated bio-slurry reactor for bioremediation of highly contaminated soils by 2,4,6-trinitrotoluene (TNT)International Biodeterioration & Biodegradation 2024; 190: 105789 doi: 10.1016/j.ibiod.2024.105789
278
Yi-wang Wang, Dong-sheng Bai, Yu Zhang, Xue-gang Luo. The role of afforestation with diverse woody species in enhancing and restructuring the soil microenvironment in polymetallic coal gangue dumpsEnvironmental Science and Pollution Research 2024;  doi: 10.1007/s11356-024-33164-6
279
Jae-Ho Jung, Sanghee Kim, Seongho Ryu, Min-Seok Kim, Ye-Seul Baek, Se-Joo Kim, Joong-Ki Choi, Joong-Ki Park, Gi-Sik Min. Development of Single-Nucleotide Polymorphism-Based Phylum-Specific PCR Amplification Technique: Application to the Community Analysis Using Ciliates as a Reference OrganismMolecules and Cells 2012; 34(4): 383 doi: 10.1007/s10059-012-0169-0
280
Bigya Dhital, Shih-Te Chuang, Jui-Chun Hsieh, Ming-Hsiu Hsieh, Hsin-I Chiang. Prevalence, Virulence, and Antimicrobial Resistance of Major Mastitis Pathogens Isolated from Taiwanese Dairy FarmsAntibiotics 2023; 13(1): 36 doi: 10.3390/antibiotics13010036
281
Richard L. Hahnke, Christin M. Bennke, Bernhard M. Fuchs, Alexander J. Mann, Erhard Rhiel, Hanno Teeling, Rudolf Amann, Jens Harder. Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North SeaEnvironmental Microbiology 2015; 17(10): 3515 doi: 10.1111/1462-2920.12479
282
Xiaozhou Fan, Brandilyn A. Peters, Eric J. Jacobs, Susan M. Gapstur, Mark P. Purdue, Neal D. Freedman, Alexander V. Alekseyenko, Jing Wu, Liying Yang, Zhiheng Pei, Richard B. Hayes, Jiyoung Ahn. Drinking alcohol is associated with variation in the human oral microbiome in a large study of American adultsMicrobiome 2018; 6(1) doi: 10.1186/s40168-018-0448-x
283
Xi-Hsuan Lin, Jeng-Kai Jiang, Jiing-Chyuan Luo, Chung-Chi Lin, Po-Hsiang Ting, Ueng-Cheng Yang, Yuan-Tzu Lan, Yi-Hsiang Huang, Ming-Chih Hou, Fa-Yauh Lee, Zongxin Ling. The long term microbiota and metabolic status in patients with colorectal cancer after curative colon surgeryPLOS ONE 2019; 14(6): e0218436 doi: 10.1371/journal.pone.0218436
284
Richard Mugani, Fatima El Khalloufi, Roseline Prisca Aba, El Mahdi Redouane, Mohammed Haida, Yasser Essadki, Soukaina El Amrani Zerrifi, Abdessamad Hejjaj, Naaila Ouazzani, Joana Azevedo, Alexandre Campos, Hans-Peter Grossart, Vitor Vasconcelos, Brahim Oudra, Laila Mandi. Innovative approaches for Microcystin removal: Bacterioplankton biodegradation and multi-soil-layering system performance assessmentJournal of Cleaner Production 2024; 452: 142187 doi: 10.1016/j.jclepro.2024.142187
285
Yuqing Dong, Yuan Yuan, Yichuan Ma, Yuanyue Luo, Wenjing Zhou, Xin Deng, Jingyu Pu, Binhong Hu, Songqing Liu. Combined Intestinal Metabolomics and Microbiota Analysis for Acute Endometritis Induced by Lipopolysaccharide in MiceFrontiers in Cellular and Infection Microbiology 2021; 11 doi: 10.3389/fcimb.2021.791373
286
Nicolas Tsesmetzis, Michael J. Maguire, Ian M. Head, Bart P. Lomans. Hydrocarbon and Lipid Microbiology ProtocolsSpringer Protocols Handbooks 2016; : 65 doi: 10.1007/8623_2016_212
287
Qianqian Huang, Yuhua Chen, Xingxing Wang, Yuanhao Wei, Min Pan, Guoqi Zhao. Effects of Phlorotannins from Sargassum on In Vitro Rumen Fermentation, Microbiota and Fatty Acid ProfileAnimals 2023; 13(18): 2854 doi: 10.3390/ani13182854
288
Mina SHIMADA, Youhei KAWASE, Kei SONOYAMA, Yoshitoshi OGURA, Tetsuya HAYASHI, Atsushi YOKOTA, Satoru FUKIYA. Development of an improved colonization system for human-derived <i>Bifidobacterium longum</i> subsp. <i>longum</i> in conventional mice through the feeding of raffinose or 1-kestoseBioscience of Microbiota, Food and Health 2024; 43(2): 110 doi: 10.12938/bmfh.2023-055
289
Jiyoung Ahn, Liying Yang, Bruce J. Paster, Ian Ganly, Luc Morris, Zhiheng Pei, Richard B. Hayes, Paul J. Planet. Oral Microbiome Profiles: 16S rRNA Pyrosequencing and Microarray Assay ComparisonPLoS ONE 2011; 6(7): e22788 doi: 10.1371/journal.pone.0022788
290
Lin Cai, Lin Ye, Amy Hin Yan Tong, Si Lok, Tong Zhang, Hauke Smidt. Biased Diversity Metrics Revealed by Bacterial 16S Pyrotags Derived from Different Primer SetsPLoS ONE 2013; 8(1): e53649 doi: 10.1371/journal.pone.0053649
291
Jun Zhao, Tian Ni, Weibing Xun, Xiaolei Huang, Qiwei Huang, Wei Ran, Biao Shen, Ruifu Zhang, Qirong Shen. Influence of straw incorporation with and without straw decomposer on soil bacterial community structure and function in a rice-wheat cropping systemApplied Microbiology and Biotechnology 2017; 101(11): 4761 doi: 10.1007/s00253-017-8170-3
292
Xiaohu Shi, Zhaojun Li, Weifeng Lin, Wenying Shi, Rongrong Hu, Gang Chen, Xuemei Li, Xuewang Li, Sen Zhang. Altered Intestinal Microbial Flora and Metabolism in Patients with Idiopathic Membranous NephropathyAmerican Journal of Nephrology 2023; 54(11-12): 451 doi: 10.1159/000533537
293
Joann Romano-Keeler, Daniel J Moore, Chunlin Wang, Robert M Brucker, Christopher Fonnesbeck, James C Slaughter, Haijing Li, Danielle P Curran, Shufang Meng, Hernan Correa, Harold N Lovvorn III, Yi-Wei Tang, Seth Bordenstein, Alfred L George Jr, Jörn-Hendrik Weitkamp. Early life establishment of site-specific microbial communities in the gutGut Microbes 2014; 5(2): 192 doi: 10.4161/gmic.28442
294
Kai-Oliver Mutz, Alexandra Heilkenbrinker, Maren Lönne, Johanna-Gabriela Walter, Frank Stahl. Transcriptome analysis using next-generation sequencingCurrent Opinion in Biotechnology 2013; 24(1): 22 doi: 10.1016/j.copbio.2012.09.004
295
Xiaochi An, Zaifeng Wang, Xiaoming Teng, Ruirong Zhou, Xingxing Wang, Min Xu, Bin Lian. Rhizosphere bacterial diversity and environmental function prediction of wild salt-tolerant plants in coastal silt soilEcological Indicators 2022; 134: 108503 doi: 10.1016/j.ecolind.2021.108503
296
Jun Hang, Valmik Desai, Nela Zavaljevski, Yu Yang, Xiaoxu Lin, Ravi Vijaya Satya, Luis J Martinez, Jason M Blaylock, Richard G Jarman, Stephen J Thomas, Robert A Kuschner. 16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profilesMicrobiome 2014; 2(1) doi: 10.1186/2049-2618-2-31
297
Qixing Mao, Fabiana Manservisi, Simona Panzacchi, Daniele Mandrioli, Ilaria Menghetti, Andrea Vornoli, Luciano Bua, Laura Falcioni, Corina Lesseur, Jia Chen, Fiorella Belpoggi, Jianzhong Hu. The Ramazzini Institute 13-week pilot study on glyphosate and Roundup administered at human-equivalent dose to Sprague Dawley rats: effects on the microbiomeEnvironmental Health 2018; 17(1) doi: 10.1186/s12940-018-0394-x
298
Yava L. Jones-Hall, Ariangela Kozik, Cindy Nakatsu, Markus M. Heimesaat. Ablation of Tumor Necrosis Factor Is Associated with Decreased Inflammation and Alterations of the Microbiota in a Mouse Model of Inflammatory Bowel DiseasePLOS ONE 2015; 10(3): e0119441 doi: 10.1371/journal.pone.0119441
299
Ping Lin, Bingyu Ding, Chunyan Feng, Shuwei Yin, Ting Zhang, Xin Qi, Huiying Lv, Xiaokui Guo, Ke Dong, Yongzhang Zhu, Qingtian Li. Prevotella and Klebsiella proportions in fecal microbial communities are potential characteristic parameters for patients with major depressive disorderJournal of Affective Disorders 2017; 207: 300 doi: 10.1016/j.jad.2016.09.051
300
Xiangfu Li, Maoqiu He, Zhen Shi, Jie Xu. Nutritional Status Regulates Bacteria‐Virus Interactions in the Northern South China SeaJournal of Geophysical Research: Biogeosciences 2023; 128(9) doi: 10.1029/2023JG007469
301
I Hewson. Technical pitfalls that bias comparative microbial community analyses of aquatic disease Ian Hewson*Diseases of Aquatic Organisms 2019; 137(2): 109 doi: 10.3354/dao03432
302
Kangqi Guo, Hua Qian, Jin Ye, Fan Sun, Yang Zhuge, Shengqi Wang, Cong Liu, Guoqing Cao, Xiaohong Zheng. Assessment of airborne bacteria and fungi in different-type buildings in Nanjing, a hot summer and cold winter moist Chinese cityBuilding and Environment 2021; 205: 108258 doi: 10.1016/j.buildenv.2021.108258
303
Zhihao Zhang, Akash Tariq, Fanjiang Zeng, Corina Graciano, Feng Sun, Xutian Chai, Zeeshan Ahmed. Nitrogen and water addition regulate fungal community and microbial co-occurrence network complexity in the rhizosphere of Alhagi sparsifolia seedlingsApplied Soil Ecology 2021; 164: 103940 doi: 10.1016/j.apsoil.2021.103940
304
Anum Ali Ahmad, Jianbo Zhang, Zeyi Liang, Mei Du, Yayuan Yang, Juanshan Zheng, Ping Yan, RuiJun Long, Bin Tong, Jianlin Han, Xuezhi Ding. Age-dependent variations in rumen bacterial community of Mongolian cattle from weaning to adulthoodBMC Microbiology 2022; 22(1) doi: 10.1186/s12866-022-02627-6
305
Ze Ren, Wei Luo, Cheng Zhang. Rare bacterial biosphere is more environmental controlled and deterministically governed than abundant one in sediment of thermokarst lakes across the Qinghai-Tibet PlateauFrontiers in Microbiology 2022; 13 doi: 10.3389/fmicb.2022.944646
306
Jorge L. M. Rodrigues, Vivian H. Pellizari, Rebecca Mueller, Kyunghwa Baek, Ederson da C. Jesus, Fabiana S. Paula, Babur Mirza, George S. Hamaoui, Siu Mui Tsai, Brigitte Feigl, James M. Tiedje, Brendan J. M. Bohannan, Klaus Nüsslein. Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communitiesProceedings of the National Academy of Sciences 2013; 110(3): 988 doi: 10.1073/pnas.1220608110
307
Ayushi Sharma, Jitendraa Vashistt, Rahul Shrivastava. Microbes in Land Use Change Management2021; : 541 doi: 10.1016/B978-0-12-824448-7.00026-7
308
Chunlong Mu, Gaorui Bian, Yong Su, Weiyun Zhu, Charles M. Dozois. Differential Effects of Breed and Nursing on Early-Life Colonic Microbiota and Immune Status as Revealed in a Cross-Fostering Piglet ModelApplied and Environmental Microbiology 2019; 85(9) doi: 10.1128/AEM.02510-18
309
Lin-Kong Gong, Xiaodong Yang, Juan Yang, Shu Wu, Yue Chen, Jiang-Tao Zhang, Zhi-Hong Wang, Li-Hua Chen, Chungen Xing, Tong Liu. Low-dose ganciclovir ameliorates dextran sulfate sodium-induced ulcerative colitis through inhibiting macrophage STING activation in miceFrontiers in Pharmacology 2022; 13 doi: 10.3389/fphar.2022.1020670
310
V. V. Almeida, H. Yan, C. H. Nakatsu, K. M. Ajuwon. Investigation of carryover effect of prior fibre consumption on growth, serum and tissue metabolic markers in Ossabaw pigs fed a high‐fat dietJournal of Animal Physiology and Animal Nutrition 2018; 102(4): 1053 doi: 10.1111/jpn.12900
311
Baoqing Zhou, Jen Mobberley, Kelly Shi, Irene A. Chen. Effects of Preservation and Propagation Methodology on Microcosms Derived from the Oral MicrobiomeMicroorganisms 2022; 10(11): 2146 doi: 10.3390/microorganisms10112146
312
Truong-Giang Huynh, Shao-Yang Hu, Chiu-Shia Chiu, Quoc-Phu Truong, Chun-Hung Liu. Bacterial population in intestines of white shrimp, Litopenaeus vannamei fed a synbiotic containing Lactobacillus plantarum and galactooligosaccharideAquaculture Research 2019; 50(3): 807 doi: 10.1111/are.13951
313
Ze Ren, Cheng Zhang, Xia Li, Kang Ma, Baoshan Cui. Abundant and Rare Bacterial Taxa Structuring Differently in Sediment and Water in Thermokarst Lakes in the Yellow River Source Area, Qinghai-Tibet PlateauFrontiers in Microbiology 2022; 13 doi: 10.3389/fmicb.2022.774514
314
Carolina Shene, Nelly Canquil, Milko Jorquera, Manuel Pinelo, Mónica Rubilar, Francisca Acevedo, Carola Vergara, Dietrich von Baer, Claudia Mardones. In vitro Activity on Human Gut Bacteria of Murta Leaf Extracts (Ugni molinae turcz.), a Native Plant from Southern ChileJournal of Food Science 2012; 77(6) doi: 10.1111/j.1750-3841.2012.02692.x
315
Aibin Zhan, Hugh J. MacIsaac. Rare biosphere exploration using high-throughput sequencing: research progress and perspectivesConservation Genetics 2015; 16(3): 513 doi: 10.1007/s10592-014-0678-9
316
Birte Staude, Silvia Gschwendtner, Tina Frodermann, Frank Oehmke, Thomas Kohl, Susanne Kublik, Michael Schloter, Harald Ehrhardt. Microbial signatures in amniotic fluid at preterm birth and association with bronchopulmonary dysplasiaRespiratory Research 2023; 24(1) doi: 10.1186/s12931-023-02560-w
317
Corrie M. Whisner, Berdine R. Martin, Cindy H. Nakatsu, George P. McCabe, Linda D. McCabe, Munro Peacock, Connie M. Weaver. Soluble maize fibre affects short-term calcium absorption in adolescent boys and girls: a randomised controlled trial using dual stable isotopic tracersBritish Journal of Nutrition 2014; 112(3): 446 doi: 10.1017/S0007114514000981
318
Jue Zhu, Yichen Chen, Huan Chen, Yuhui Sun, Lifeng Yan, Miaohua Zhu, Liang chen, Qiming Wang, Jing Zhang. Comparison of microbial abundance and diversity in uterine and peritoneal fluid in infertile patients with or without endometriosisBMC Women's Health 2024; 24(1) doi: 10.1186/s12905-024-02985-5
319
Ze Ren, Cheng Zhang, Xia Li, Kang Ma, Zhe Zhang, Kexin Feng, Baoshan Cui. Bacterial Communities Present Distinct Co-occurrence Networks in Sediment and Water of the Thermokarst Lakes in the Yellow River Source AreaFrontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.716732
320
Hang Qiao, Longsheng Chen, Yajun Hu, Chenghua Deng, Qi Sun, Shaohong Deng, Xiangbi Chen, Li Mei, Jinshui Wu, Yirong Su. Soil Microbial Resource Limitations and Community Assembly Along a Camellia oleifera Plantation ChronosequenceFrontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.736165
321
Petra Videnska, Marcela Faldynova, Helena Juricova, Vladimir Babak, Frantisek Sisak, Hana Havlickova, Ivan Rychlik. Chicken faecal microbiota and disturbances induced by single or repeated therapy with tetracycline and streptomycinBMC Veterinary Research 2013; 9(1) doi: 10.1186/1746-6148-9-30
322
Robert W. Li. Rumen Microbiology: From Evolution to Revolution2015; : 223 doi: 10.1007/978-81-322-2401-3_16
323
Ivan Kushkevych, Monika Vítězová, Tomáš Vítěz, Milan Bartoš. Production of biogas: relationship between methanogenic and sulfate-reducing microorganismsOpen Life Sciences 2017; 12(1): 82 doi: 10.1515/biol-2017-0009
324
Ningjin Jiang, Xueqing Chang, Wei Huang, Fahim Ullah Khan, James Kar-Hei Fang, Menghong Hu, Elvis Genbo Xu, Youji Wang. Physiological response of mussel to rayon microfibers and PCB's exposure: Overlooked semi-synthetic micropollutant?Journal of Hazardous Materials 2024; 470: 134107 doi: 10.1016/j.jhazmat.2024.134107
325
Alba Regueira-Iglesias, Lara Vázquez-González, Carlos Balsa-Castro, Nicolás Vila-Blanco, Triana Blanco-Pintos, Javier Tamames, Maria José Carreira, Inmaculada Tomás. In silico evaluation and selection of the best 16S rRNA gene primers for use in next-generation sequencing to detect oral bacteria and archaeaMicrobiome 2023; 11(1) doi: 10.1186/s40168-023-01481-6
326
Jingjing Mu, Jingwen Xu, Linlin Wang, Caifa Chen, Ping Chen. Anti-inflammatory effects of purple sweet potato anthocyanin extract in DSS-induced colitis: modulation of commensal bacteria and attenuated bacterial intestinal infectionFood & Function 2021; 12(22): 11503 doi: 10.1039/D1FO02454J
327
François-Étienne Sylvain, Nicolas Leroux, Éric Normandeau, Aleicia Holland, Sidki Bouslama, Pierre-Luc Mercier, Adalberto Luis Val, Nicolas Derome, Blaire Steven. Genomic and Environmental Factors Shape the Active Gill Bacterial Community of an Amazonian Teleost HolobiontMicrobiology Spectrum 2022; 10(6) doi: 10.1128/spectrum.02064-22
328
Pernilla Lif Holgerson, Carina Öhman, Agneta Rönnlund, Ingegerd Johansson, Zezhang Wen. Maturation of Oral Microbiota in Children with or without Dental CariesPLOS ONE 2015; 10(5): e0128534 doi: 10.1371/journal.pone.0128534
329
Xin Lv, Qiankun Wang, Xiaoyan Zhang, Junjie Hao, Li Li, Wang Chen, Haokun Li, Yuhui Wang, Cuiping Ma, Jialin Wang, Quanlan Liu. Community structure and associated networks of endophytic bacteria in pea roots throughout plant life cyclePlant and Soil 2021; 468(1-2): 225 doi: 10.1007/s11104-021-05124-3
330
Ruiying Wang, Guojun Zhou, Lukanxuan Wu, Xin Huang, Yujing Li, Bin Luo, Huili Zhu, Wei Huang. The Microbial Composition of Lower Genital Tract May Affect the Outcome of in vitro Fertilization-Embryo TransferFrontiers in Microbiology 2021; 12 doi: 10.3389/fmicb.2021.729744
331
Liying Yang, Michael A. Poles, Gene S. Fisch, Yingfei Ma, Carlos Nossa, Joan A. Phelan, Zhiheng Pei. HIV-induced immunosuppression is associated with colonization of the proximal gut by environmental bacteriaAIDS 2016; 30(1): 19 doi: 10.1097/QAD.0000000000000935
332
Weibing Xun, Wei Li, Ting Huang, Yi Ren, Wu Xiong, Youzhi Miao, Wei Ran, Dongchu Li, Qirong Shen, Ruifu Zhang. Long-term agronomic practices alter the composition of asymbiotic diazotrophic bacterial community and their nitrogen fixation genes in an acidic red soilBiology and Fertility of Soils 2018; 54(3): 329 doi: 10.1007/s00374-018-1264-y
333
Qingjuan Meng, Pengfei Li, Jianhua Qu, Ying Liu, Yifan Wang, Zhaobo Chen, Ying Zhang. Study on the community structure and function of anaerobic granular sludge under trichloroethylene stressEcotoxicology 2021; 30(7): 1408 doi: 10.1007/s10646-020-02343-9
334
Ao Yuan, Saini Dinesh Kumar, Haotian Wang, Shancong Wang, Somayanda Impa, Hao Wang, Jiameng Guo, Yongchao Wang, Qinghua Yang, Xiao Jun A. Liu, Krishna Jagadish SV, Ruixin Shao. Dynamic interplay among soil nutrients, rhizosphere metabolites, and microbes shape drought and heat stress responses in summer maizeSoil Biology and Biochemistry 2024; 191: 109357 doi: 10.1016/j.soilbio.2024.109357
335
Chong Liu, Yongxing Chen, Xiaohua Li, Yanrong Zhang, Jing Ye, Hongkun Huang, Changxiong Zhu. Temporal effects of repeated application of biogas slurry on soil antibiotic resistance genes and their potential bacterial hostsEnvironmental Pollution 2020; 258: 113652 doi: 10.1016/j.envpol.2019.113652
336
Dayong Li, Wancai Xia, Xinyuan Cui, Mei Zhao, Kai Huang, Xueyu Wang, Jian Shen, Hua Chen, Lifeng Zhu. The putatively high‐altitude adaptation of macaque monkeys: Evidence from the fecal metabolome and gut microbiomeEvolutionary Applications 2023; 16(10): 1708 doi: 10.1111/eva.13595
337
Hui Nie, Xinxin Wang, Yanghe Luo, Fanhua Kong, Guangqing Mu, Xiaomeng Wu. Mechanism Explanation on Improved Cognitive Ability of D-Gal Inducing Aged Mice Model by Lactiplantibacillus plantarum MWFLp-182 via the Microbiota–Gut–Brain AxisJournal of Agricultural and Food Chemistry 2024;  doi: 10.1021/acs.jafc.3c09675
338
Aibin Zhan, Sarah A. Bailey, Daniel D. Heath, Hugh J. Macisaac. Performance comparison of genetic markers for high‐throughput sequencing‐based biodiversity assessment in complex communitiesMolecular Ecology Resources 2014; 14(5): 1049 doi: 10.1111/1755-0998.12254
339
Amy Y Sato, Gretel G Pellegrini, Meloney Cregor, Kevin McAndrews, Roy B Choi, Maria Maiz, Olivia Johnson, Linda D McCabe, George P McCabe, Mario G Ferruzzi, Mary A Lila, Munro Peacock, David B Burr, Cindy H Nakatsu, Connie M Weaver, Teresita Bellido. Skeletal Protection and Promotion of Microbiome Diversity by Dietary Boosting of the Endogenous Antioxidant ResponseJournal of Bone and Mineral Research 2020; 36(4): 768 doi: 10.1002/jbmr.4231
340
Canfeng Hua, Yali Geng, Qu Chen, Liqiong Niu, Liuping Cai, Shiyu Tao, Yingdong Ni, Ruqian Zhao. Chronic dexamethasone exposure retards growth without altering the digestive tract microbiota composition in goatsBMC Microbiology 2018; 18(1) doi: 10.1186/s12866-018-1253-1
341
Liv M. Duus, Niels Høiby, Mikala Wang, Oluf Schiøtz, Niels Nørskov-Lauritsen. Bacteria of the genus Dyella can chronically colonise the airways of patients with cystic fibrosis and elicit a pronounced antibody responseInternational Journal of Medical Microbiology 2013; 303(5): 267 doi: 10.1016/j.ijmm.2013.04.005
342
Yin Zhang, Fangxia Shen, Yi Yang, Mutong Niu, Da Chen, Longfei Chen, Shengqi Wang, Yunhao Zheng, Ye Sun, Feng Zhou, Hua Qian, Yan Wu, Tianle Zhu. Insights into the Profile of the Human Expiratory Microbiota and Its Associations with Indoor MicrobiotasEnvironmental Science & Technology 2022; 56(10): 6282 doi: 10.1021/acs.est.2c00688
343
Yi Dong, Yuan Zhao, Wenyan Zhang, Yan Li, Feng Zhou, Chenggang Liu, Ying Wu, Sumei Liu, Wuchang Zhang, Tian Xiao. Bacterial diversity and community structure in the East China Sea by 454 sequencing of the 16S rRNA geneChinese Journal of Oceanology and Limnology 2014; 32(3): 527 doi: 10.1007/s00343-014-3215-2
344
M. Gołębiewski, A. Tretyn. Generating amplicon reads for microbial community assessment with next‐generation sequencingJournal of Applied Microbiology 2020; 128(2): 330 doi: 10.1111/jam.14380