Genotyping and pathotyping of diversified strains of infectious bronchitis viruses circulating in Egypt

Table 1 Phylogenetic grouping of infectious bronchitis virus in the study

Isolate No.	Isolate name	Age of birds (d)	Governorate	GeneBank accession number	Phylogenetic group
1	IBV-EG/12773F(3)-2012	20	Beni-Suef	KC608180	Classic1
2	IBV-EG/11539F-2011	23	Kafr-El-Shikh	JQ839289	Classic
3	IBV-EG/10643F(1-7)-2010	19	Sharqia	KC608171	Classic
4	IBV-EG/116F-1(1)-2011	30	Gharbia	KC608176	Classic
5	IBV-EG/11673F-2011	20	Alexandria	KC608173	Egy Var I
6	IBV-EG/11413F-2011	25	Sharqia	KC608177	Egy Var I
7	IBV-EG/10324F-2010	17	Giza	KC608172	Egy Var I
8	IBV-EG/1299B-2012	18	Fayoum	KC608182	Egy Var I
9	IBV-EG/1196F-2011	15	Behira	KC608174	Egy Var I
10	IBV/EG/IBV1-2011	25	Suez	JQ839288	Egy Var I
11	IBV-EG/1138F-4-2011	18	Dakahlia	KC608175	Egy Var II
12	IBV-EG/Qalyobia/121-2012	22	Qaliobeya	KC608181	Egy Var II
13	IBV-EG/1212B-2012	14	Al Behira	JQ839287	Egy Var II
14	IBV-EG/1293B-2012	21	Fayoum	KC608178	Egy Var II
15	IBV-EG/1262F(3)-2012	28	Ismalia	KC608179	Egy Var II
16	CH/EGYPT/13200F/2013	20	Giza	KT832805	Egy Var II
17	CH/EGYPT/13950F/2013	25	Alexandria	KT832806	Egy Var II
18	CH/EGYPT/14251F/2014	22	Suez	KT832807	Egy Var II
19	CH/EGYPT/141107F/2014	32	Giza	KT832808	Egy Var II
20	CH/EGYPT/15919F/2015	26	Dakahlia	KT832809	Egy Var II

¹Massachusetts - like strain.