Retrospective Study
Copyright ©The Author(s) 2015.
World J Gastroenterol. Jun 7, 2015; 21(21): 6684-6697
Published online Jun 7, 2015. doi: 10.3748/wjg.v21.i21.6684
Table 1 Hepatitis B virus sequences with controversial genotype and/or sub-genotype results based on a direct reference from the Genbank sequence annotation
Sequence IDNCBI annotationOnline software GenotypingMEGA5.0 softwarePhylogenetic tree
FJ386674CBB10
EU939559CBB2
GQ377630C4BB2
GQ377635C4BB2
AY217374BCC1
EU939668B2CC2
GQ377556BCC2
GQ377539BCC2
GQ377590BCC2
EU939630B2CC2
GQ377596BCC2
GQ377614BCC2
GQ377634BCC2
GQ377604BCC2
GQ377594BCC2
GQ377602BCC2
GQ377565BCC2
GQ377631C1CC2
GQ377605C1CC2
GQ377573BBC2
GQ377613BBC2
GQ377549BBC2
GQ377564BBC2
Table 2 Mean percentage of nucleotide divergence over the genome among hepatitis B virus isolates with controversial genotype and/or sub-genotype results
ABCDEFGHIJ
B0.10 ± 0.01
C0.10 ± 0.010.12 ± 0.00
D0.12 ± 0.010.13 ± 0.010.13 ± 0.01
E0.11 ± 0.010.12 ± 0.010.13 ± 0.010.09 ± 0.01
F0.15 ± 0.010.16 ± 0.010.15 ± 0.010.16 ± 0.010.15 ± 0.01
G0.14 ± 0.010.15 ± 0.010.15 ± 0.010.14 ± 0.010.13 ± 0.010.17 ± 0.02
H0.16 ± 0.020.16 ± 0.010.15 ± 0.010.16 ± 0.010.16 ± 0.010.10 ± 0.010.17 ± 0.02
I0.09 ± 0.010.11 ± 0.010.08 ± 0.010.13 ± 0.010.12 ± 0.010.15 ± 0.010.14 ± 0.010.16 ± 0.01
J0.14 ± 0.020.13 ± 0.010.13 ± 0.010.15 ± 0.020.14 ± 0.020.16 ± 0.020.16 ± 0.020.17 ± 0.020.13 ± 0.01
FJ3866740.11 ± 0.010.06 ± 0.010.10 ± 0.010.14 ± 0.010.13 ± 0.010.16 ± 0.010.15 ± 0.010.17 ± 0.020.11 ± 0.010.13 ± 0.01
B1B2B3B4B5B6B7B8B9
B20.03 ± 0.00
B30.05 ± 0.010.05 ± 0.01
B40.04 ± 0.000.04 ± 0.000.05 ± 0.01
B50.05 ± 0.010.05 ± 0.000.03 ± 0.000.05 ± 0.01
B60.05 ± 0.010.05 ± 0.010.04 ± 0.000.06 ± 0.010.05 ± 0.01
B70.05 ± 0.010.05 ± 0.010.03 ± 0.000.05 ± 0.010.03 ± 0.000.04 ± 0.00
B80.05 ± 0.000.05 ± 0.000.03 ± 0.000.05 ± 0.000.03 ± 0.000.04 ± 0.010.03 ± 0.00
B90.05 ± 0.010.05 ± 0.000.03 ± 0.000.05 ± 0.000.03 ± 0.000.05 ± 0.010.03 ± 0.000.03 ± 0.00
FJ3866740.05 ± 0.010.05 ± 0.000.07 ± 0.010.06 ± 0.010.07 ± 0.010.07 ± 0.010.07 ± 0.010.06 ± 0.010.06 ± 0.01