Basic Study
Copyright ©The Author(s) 2015.
World J Gastroenterol. May 28, 2015; 21(20): 6215-6228
Published online May 28, 2015. doi: 10.3748/wjg.v21.i20.6215
Table 1 Four miRNA candidates and negative control sequences of CD97
OligoSequence (5’-3’)
1FTGCTGATGACATTCTGGATGGTGACCGTTTTGGCCACTGACTGACGGTCACCACAGAATGTCAT
1RCCTGATGACATTCTGTGGTGACCGTCAGTCAGTGGCCAAAACGGTCACCATCCAGAATGTCATC
2FTGCTGTATCTTCAAGGTTTGAGAGCAGTTTTGGCCACTGACTGACTGCTCTCACCTTGAAGATA
2RCCTGTATCTTCAAGGTGAGAGCAGTCAGTCAGTGGCCAAAACTGCTCTCAAACCTTGAAGATAC
3FTGCTGAAGAAAGTAGAGCTCCAGGCCGTTTTGGCCACTGACTGACGGCCTGGATCTACTTTCTT
3RCCTGAAGAAAGTAGATCCAGGCCGTCAGTCAGTGGCCAAAACGGCCTGGAGCTCTACTTTCTTC
4FTGCTGAAGATGAACAGGCCAAAGACCGTTTTGGCCACTGACTGACGGTCTTTGCTGTTCATCTT
4RCCTGAAGATGAACAGCAAAGACCGTCAGTCAGTGGCCAAAACGGTCTTTGGCCTGTTCATCTTC
Negative control
Negative-FTGCTGAAATGTACTGCGCGTGGAGACGTTTTGGCCACTGACTGACGTCTCCACGCAGTACATTT
Negative-RCCTGAAATGTACTGCGTGGAGACGTCAGTCAGTGGCCAAAACGTCTCCACGCGCAGTACATTTC
Table 2 Significant Kyoto encyclopedia of genes and genomes pathways enriched for target genes of differently expressed miRNAs
No.Pathway IDPathway descriptionTarget genes with pathway annotation, n (%)P value
1hsa05200Pathways in cancer179 (2.37)5.50 ×10-3
2hsa04060Cytokine-cytokine receptor interaction152 (2.01)4.00 × 10-4
3hsa04010:MAPK signaling pathway146 (1.93)1.13 × 10-2
4hsa04080Neuroactive ligand-receptor interaction139 (1.84)1.81 × 10-2
5hsa04510Focal adhesion121 (1.60)2.00 × 10-4
6hsa04810Regulation of actin cytoskeleton116 (1.54)3.79 × 10-2
7hsa04062Chemokine signaling pathway107 (1.42)5.60 × 10-3
8hsa04020Calcium signaling pathway95 (1.26)5.88 × 10-2
9hsa04142Lysosome72 (0.95)2.3 × 10-3
10hsa04670Leukocyte transendothelial migration68 (0.90)2.36 × 10-3