Extracellular vesicles in liver disease and beyond

Abstract

Extracellular vesicles (EVs) are membrane-derived vesicles which can be released by different cell types, including hepatocytes, hepatic stellate cells and immune cells in normal and pathological conditions. EVs carry lipids, proteins, coding and non-coding RNAs and mitochondrial DNA causing modifications on the recipient cells. These vesicles are considered potential biomarkers and therapeutic agents for human diagnostic and prognostic due to their function as intercellular mediators of cell-cell communication within the liver and between other organs. However, the development and optimization of methods for EVs isolation is required to characterize their biological functions as well as their potential as a treatment option in the clinic. Nevertheless, many questions remain unanswered related to the function of EVs under physiological and pathological conditions. In the current editorial, the results obtained in different studies that investigated the role of intrahepatic EVs during liver diseases, including drug-induced liver injury, non-alcoholic fatty liver, non-alcoholic steatohepatitis, alcoholic liver disease and hepatocellular carcinoma and extrahepatic EVs in remote organs during pathological events such as pulmonary disease, cardiovascular diseases, neurodegenerative disorders e.g., Alzheimer’s disease, Parkinson’s disease and multiple sclerosis as well as in immunopathological processes, are discussed. Although much light needs to be shed on the mechanisms of EVs, these membrane-derived vesicles represent both a novel promising diagnostic, and a therapeutic tool for clinical use that we emphasize in the current editorial.

Key Words: Extracellular vesicles, MicroRNA, Hepatocytes, Drug-induced liver injury, Alcoholic liver disease, Non-alcoholic fatty liver disease, Non-alcoholic steatohepatitis, Hepatocellular carcinoma

Core tip: It has become increasingly clear that extracellular vesicles (EVs) are particularly important intercellular messenger vesicles during pathophysiological processes. EVs can provide more information about the processes that occur in remote organs during the development of diseases contributing to improving our tools for diagnosis, prognosis and therapy.

INTRODUCTION

The emergence of extracellular vesicles (EVs) as critical mediators of cell-cell communication has gained great interest from the scientific community due to its implication for human diagnostic and therapeutic applications[1,2]. The role of EVs in intercellular transport was reported for the first time in 1980[3]. However, in the past decades, EVs have exponentially attracted the interest of researchers.

There are different mechanisms of formation of these vesicles, creating a complex repertoire of EVs which are secreted and differ in size and origin, such as exosomes, ectosomes, apoptotic bodies, oncosomes and large oncosomes[1]. Exosomes are the smallest EVs (30-100 nm). The process of formation the exosomes is originated during endosome maturation[2]. First, the early endosome is formed by invagination of the plasma membrane and the consequent fusion of endocytic vesicles. The endocytic vesicles can follow two pathways: (1) The endocytic material is recycled and returns to the plasmatic membrane; and (2) exosomes become multivesicular bodies (MVBs) which are a type of late endosomes containing membrane-bound vesicles (intraluminal vesicles)[4].

MVBs are formed by the invagination of the limiting membrane, a process during which a small portion of cytosol is trapped into the vesicle. Finally, there are MVBs which are degraded in the lysosome or release their membrane-bound vesicles known as exosomes to extracellular media by the fusion of MVBs to the plasma membrane (Figure 1).

Figure 1 Mechanisms of formation extracellular vesicles and composition. The early endosome is generated by invagination of the plasma membrane. The consequent fusion of endocytic vesicles mediated by the endosomal sorting complex responsible for transport (ESCRTs), formed multivesicular bodies (MVBs). MVBs can be degraded in the lysosome or released the intraluminal vesicles known as exosomes by the fusion of MVBs to the plasma membrane mediated by Rab GTPases. Microvesicles are generated by outward budding from the plasmatic membrane. Apoptotic bodies are generated during programmed cell death or apoptosis. The composition of extracellular vesicles (EVs) includes proteins (tetraspanins, receptors including epidermal growth factor receptor (EGFR), adhesion proteins, transporters and channels, vesicle trafficking-related proteins, cytoskeleton proteins and cytosolic proteins), lipids (sphingomyelin, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine) and nucleic acids (messenger RNA (mRNA), microRNA (miRNA), ribosomal RNA (rRNA), transfer RNA (tRNA), mitochondrial DNA (mtDNA)). ESCRTs: Endosomal sorting complex responsible for transport; MVBs: Multivesicular bodies; EVs: Extracellular vesicles; EGFR: Epidermal growth factor receptor; mRNA: Messenger RNA; miRNA: MicroRNA; rRNA: Ribosomal RNA; tRNA: Transfer RNA; mtDNA: Mitochondrial DNA.

The process of generation of vesicles is mediated by the endosomal sorting complex responsible for transport and other components, such as ceramide lipids and tetraspanins. Rab GTPases are involved in exosome secretion but the requirements for specific Rabs may differ depending on the cell type[5,6].

Ectosomes (also known as microvesicles) are a population of extracellular vesicles whose size is 50-1000 nm[7]. They are formed by outward budding of the cell plasma membrane[8]. These vesicles are shed by different cell types and express a subset of cell surface proteins that depend on the component of the cells plasma membranes of origin[9].

Apoptotic bodies are presented in a wide range of sizes (50-2000 nm). Programmed cell death or apoptosis triggers the formation and release of apoptotic bodies[10].

Oncosomes and large oncosomes are presented in a range of size between 100-500 nm and they are generated by budding of the plasma membrane. These types of vesicles are only released by cancer cells[11] carrying oncogenic cargo which modulate tumor environment promoting the proliferation, differentiation and metabolism of tumors[12].

Composition of EVs

Independently of their biogenesis, the composition of EVs includes proteins, lipids, and nucleic acids (coding and non-coding RNA and mitochondrial DNA)[13]. Lipidomic analysis shows that the membrane of EVs contains abundant cholesterol, sphingomyelin, ceramide, saturated fatty acids and phosphatidylserine. Furthermore, proteomic analysis shows that EVs share common marker proteins, such as heat shock proteins (Hsp70 and Hsp90), tetraspanins (CD9, CD63, CD81, CD82), endosomal sorting complex required for transport (Alix and Tsg101) and membrane trafficking and merging proteins (GTPases, Flotillin and Annexins) (Figure 2)[14].

Figure 2 Role of extracellular vesicles during pathologic processes inside and outside the liver. Intrahepatic extracellular vesicles in non-alcoholic fatty liver (NAFLD), non-alcoholic steatohepatitis (NASH), drug-induced liver injury (DILI), alcoholic liver disease (ALD) and hepatocellular carcinoma (HCC). Extrahepatic EVs play a fundamental role in pulmonary disease, cardiovascular diseases (CVDs), neurodegenerative disorders and immunopathological disorders. EVs: Extracellular vesicles; NAFLD: Non-alcoholic fatty liver; NASH: Non-alcoholic steatohepatitis; DILI: Drug-induced liver injury; ALD: Alcoholic liver disease; HCC: Hepatocellular carcinoma; CVDs: Cardiovascular diseases.

Location of EVs

EVs are released to the extracellular media circulating in the adjacent extracellular space and appear in biological fluids, such as blood, saliva, breast milk, bronchial lavage fluid, cerebral spinal fluid, amniotic fluid and urine[15]. However, due to their heterogeneous size, there is a current lack of purification methods. Moreover, these molecules are included in a big group known as EVs since they are also very difficult to isolate and fully discriminate[16].

Circulating EVs can be captured by other cells via three ways: Direct membrane fusion, receptor mediated fusion or endocytosis. The recipient cells accept their cargo and, consequently, may suffer modifications in their normal cellular processes[17,18]. EVs-mediated pathological processes can be interrupted by inhibiting EVs release. Emerging studies have recently shown that the inhibition of neutral sphingomyelinase 2 (nSmase2) with GW4869 block exosome release or exosome mediated signalling in different cell types[19].

EVs in liver

The liver has great interest in the scientific research due to this implication in many processes, such as detoxification of blood, filtering all harmful elements and in production, processing and transport of lipids. Furthermore, the liver is a multicellular organ formed by parenchymal cells (hepatocytes) and non-parenchymal cells including Kupffer cells (KCs), sinusoidal endothelial cells (SECs), hepatic stellate cells (HSCs)[20]. The coexistence of different cell types creates a need for intercellular communication network in order to maintain liver homeostasis[21]. Many pathophysiological events are regulated by EVs which can be transferred from donor cells to recipient cells and can activate or regulate cell functions including protein expression, cell proliferation and differentiation and/or antiviral responses. This intercellular communication might be done through EVs, and for this reason, it is necessary to shed light into the physiology and pathology of hepatic EVs[21].

Primary hepatocytes secrete EVs proteins that include exosomal marker proteins (e.g., Tsg101, CD63 and CD81), hepatic-specific proteins, like the asialoglycoprotein receptor, and different proteins associated with metabolic disorder which need further investigation and identification[22].

EVs in drug-induced liver injury

Nowadays, traditional standard biomarkers for liver injury are based on the measurement of hepatic enzymes in plasma or serum including AST, ALT, alkaline phosphatase (AP) and gamma-glutamil-transpeptidase[23]. However, serum or plasma levels of these enzymes do not always reflect the stage of liver disease, therefore causing significant limitations in the diagnosis and staging of different chronic and acute liver disorders. For this reason, miRNAs have emerged as new potential biomarkers of liver injury.

Liver-derived miRNAs may originate from resident parenchymal and non-parenchymal cells and can be significantly altered in certain liver diseases. It can be found as non-vesicle associated miRNA (free circulating miRNA) or associated with vesicles (EVs miRNA) being the last one, the more stable biomarkers[24].

The use of miRNAs as potential biomarker of liver injury was demonstrated in a mouse model of APAP-induced acute liver injury. It was found a significant increase in miR-122 levels in EVs released from hepatocytes[25]. The same results were observed in a rat model of APAP-induced liver injury with increased levels of circulating EVs. These results correlated with a study in primary human hepatocytes (PHH)[26]. These results strongly support that miRNAs might be used as potential biomarkers of liver diseases, being miR-122 associated with EVs proposed as biomarker in drug-induced liver injury (DILI).

EVs in non-alcoholic fatty liver disease and non-alcoholic steatohepatitis

Non-alcoholic fatty liver disease (NAFLD) is characterized by over-accumulation of fat in the liver producing hepatic steatosis triggering an inflammatory reaction which results in the development of non-alcoholic steatohepatitis (NASH). Both diseases are characterized by an increase of circulating EVs. In order to characterize EVs cargo, it was demonstrated that hepatocyte-derived EVs released during lipotoxic fatty acids are enriched in Vanin-1 (VNN1) and miR128-3p. VNN1 is responsible of the internalization of EVs into HSCs and miR128-3p inhibits the expression of PPAR-gamma provoking an activation of stellate cells inducing fibrosis in the liver[27]. Altogether these results indicate that VNN1 and miR128-3p released by hepatocytes associated with EVs during lipotoxicity might be important during HSCs activation in NAFLD/NASH.

EVs in alcoholic liver disease

In an attempt to further characterize the critical role of EVs in vivo during alcoholic liver disease (ALD), Saha and colleagues[28], used an experimental model of ALD. The authors first found a significant increase in the total number of EVs in the serum of mice with an alcohol diet and the effect of serum EVs derived from ALD mice in naïve recipient mice. To characterize the different components in EVs release to ALD mice they found an increase in miR-192 and miR-30a levels compared to control EVs. Moreover, hepatocyte released EVs causing an increase in the percentage of F4/80^hi CD11b^low (KCs) and TNF-α, suggesting the link between innate immune cell activation and hepatocyte intoxication during the process of alcoholic liver injury.

Hepatic resident macrophages (KCs) and infiltrating macrophages play a pivotal role in ALD pathogenesis whose production of proinflammatory cytokines exhibited the inflammatory process characteristic of alcoholic hepatitis (AH). For this reason, it is necessary to characterize specific proteins implicated in macrophage activation.

In order to evaluate the in vivo role of macrophages, Verma and collaborators[29] described that cultured hepatocytes released CD40L in EVs in response to alcohol exposure which leads to macrophage activation. In contrast, Saha et al[28] showed that Hsp90 as the cause of macrophage activation, demonstrating that there was a significant increase in levels of Hsp90 EVs secreted from hepatocytes in ALD. These studies reveal that Hsp90 and CD40L carried by EVs released from hepatocytes in response to alcohol intake, have an important role in macrophage activation during ALD.

EVs in hepatocellular carcinoma

Several studies suggest that EVs contribute to proliferation and propagation of hepatocellular carcinoma (HCC) cells during HCC[30]. It was demonstrated that EVs released by CD90⁺ cells provoked an increase in vascular endothelial growth factor 1 in endothelial cells which lead with metastasis. Moreover, it has suggested that EVs collaborate with the microenvironment that promote tumor survival and growth[31]. It was found that EVs released by metastatic HCC cells induce hepatocytes to secrete metalloproteinase-2 and -9 which facilitate the invasion of HCC cells[32].

Kogure et al[33], characterized the cargo of EVs release by HCC cells in vitro identifying several miRNA, such as miR-584, miR-517c, miR-378, miR-520f, miR142-5p, miR-451, miR-518d, miR-215, miR-376a, miR-133b, and miR-367. These studies indicate that oncogenic cargo released by HCC cells modulate tumor environment facilitating the invasion of HCC cells promoting the proliferation and differentiation of tumors.

Viral hepatitis

The role of CCL5 released by HCV-infected macrophages/KCs thereby inducing the activation of HSCs through the phosphorylation of ERK was demonstrated. In fact, the neutralization of CCL5 in HSCs in culture using supernatant from HCV-infected macrophages caused a significant down-regulation of inflammatory and profibrotic genes[34]. Another study demonstrated that liver cells treated with IFN-α induced resistance to HBV replication in infected liver cells by cell-cell communication through EVs[35]. These results provide evidence that EVs have an important role during viral infection and antiviral response.

Extrahepatic EVs

So far, the role of EVs in different pathophysiological events in the liver was discussed. However, several articles revealed the role of EVs in remote organs taking part of different events under pathological conditions, such as pulmonary disease, neurodegenerative disorders, cardiovascular diseases and during immunopathological processes.

EVs in pulmonary disease

The liver takes an important role in maintaining systemic homeostasis[36]. The injured liver can induce different pathogenic processes in remote organs. Indeed, EVs are linked with different pathological conditions inside and outside the liver[37]. For this reason, hepatocyte-derived-EVs are suggested to have an important role in the pathogenesis of pulmonary disease.

To characterize the critical role of hepatic pathogenic processes, and their implications in the lung, Royo et al[37] investigated the role of Arg1 carried by EVs as one of the factors responsible for the lung damage. The study confirms that hepatic EVs and the effect of Arg1 might propagate the injury in the lung inducing pulmonary endothelial dysfunction. It concludes that EVs take an important part in communication between the liver and lung, could be Arg1 the responsible for pulmonary endothelial dysfunction.

EVs in neurodegenerative disorders

On the other hand, we discuss the role of EVs in different neurodegenerative disorders including Alzheimer’s disease (AD), Parkinson’s disease (PD) and multiple sclerosis (MS) as a potential source of information in neurodegenerative disorders[38].

It has been suggested that lipids cargo in EVs released from neurons promoting the formation of β-amyloid (βA) peptides contributing to neuronal damage in AD[39]. Furthermore, it was found that AD patients have lower levels of miR-193b in blood which are correlated with levels in cerebral spinal fluid (CSF)[40]. In addition, miR-132 and miR-212 are downregulated in neurodegenerative disorders including AD[41].

PD is characterized by an accumulation of α-synuclein protein. Therefore the cargo inside EVs was analysed and showed that this protein is present outside and inside of EVs, and their secretion contribute to the development of the disease[42].

In order to understand the role of EVs in MS, researchers showed that EVs are released from brain endothelium and have increased levels of β2-microglobulin, MHC II, CD40 and ICOSL. Moreover, they are involved in the activation of CD4⁺ and CD8⁺ lymphocytes[43]. Furthermore, serum EVs were able to decrease the levels of miR-122-5p, miR-196b-5p, miR-301a-3p, miR-532-5p[44].

Considering these results, EVs might contribute to the progression of neurodegenerative diseases and thus be used in the clinical setting as biomarkers or drug delivery tools.

EVs in cardiovascular diseases

Emerging studies reveals that EVs have regulatory effects in cardiovascular diseases being released by endothelial cells, cardiomyocytes, fibroblasts and stem cells and participating in pathophysiological processes contributing to the development of disease[45].

EVs have been involved in the regulation of cardiomyocyte hypertrophy and cardiac fibrosis. It was demonstrated that EVs released from myocytes carry Hsp90 together with IL-6. Both molecules are involved in the activation of cardiac fibroblasts causing increased collagen production and deposition during cardiac hypertrophy[46]. Furthermore, it was found a significantly increase in the levels of miR-21-3p in pericardial fluid in a mice model of transverse aortic constriction-induced hypertrophy. This miR-21-3p associated with EVs was released by fibroblasts and was uptake by cardiomyocytes leading to an activation of intercellular signalling pathways which provoke cellular hypertrophy[47]. Interestingly, EVs play a critical role in intercellular communication between fibroblasts and cardiomyocytes during the hypertrophic process contributing to cardiac fibrosis.

EVs in immunopathology

Another important issue is the role of EVs in antiviral immune response. Torralba and colleagues[48], investigated that EVs released from T cells contained mitochondrial DNA and this genetic material can be transferred unidirectionally from T cells to dendritic cells (DCs) during the formation of antigen-dependent contacts. The possible signalling pathways which are activating in DCs were analysed, finding a significantly increase in the expression of different genes. Most of them were involved in the antiviral response mediated by IFN-I resulting into immune protection effect against virus infection leading a decrease viral infection. Altogether these results indicate that EVs from T cells conferred protection to DCs against virus infection through antigen-driven contacts.

CONCLUSION

In summary, the data show that EVs can be used not only as diagnostic but theranostic tool for the treatment of acute and chronic liver disease (Table 1). EVs can be released by hepatocytes carrying miRNA as potential biomarkers in DILI or triggering macrophage activation in ALD and an activation of HSCs in NAFLD/NASH. Emerging evidences suggests that EVs promotes the proliferation and migrations of tumor cells. Additionally, circulating EVs have an effect outside the liver as seen in the lung taking particularly interest the link between EVs released by hepatocytes and the effect in pulmonary disease. The effect of EVs in the brain as seen in different neurodegenerative disorders contributing to the progress and development of the diseases; in the heart, having regulatory effects in cardiovascular diseases and finally during viral infection for their immune protection effect.

Table 1 Summary of extracellular vesicles biomarkers in hepatic and extracellular vesicles.

	Type of disease	Sample	Species	Biomarker	Ref.
Intrahepatic	Drug-induced liver injury (DILI)	Plasma/serum/cell culture	Mouse/rat/human	miR-122 [↑]	[25,26]
	Non-alcoholic fatty liver disease (NAFLD)/non-alcoholic steatohepatitis (NASH)	Cell culture	Mouse	miR-128-3p [↑]; VNN1	[27]
	Alcoholic liver disease (ALD)	Serum/cell culture	Mouse/human	miR-192, miR-30a [↑]; CD40L, Hsp90	[28,29]
	Hepatocellular carcinoma (HCC)	Cell culture	Human	Vascular endotelial growth factor 1, MMP2, MMP9; miR-584, miR-517c, miR-378, miR-520f, miR142-5p, miR-451, miR-518d, miR-215, miR376a, miR-133b, and miR-367	[31-33]
	Viral hepatitis (HBV/HCV)	Cell culture	Human	Viral RNA; CCL5	[34]
Extrahepatic	Pulmonary disease	Serum/cell culture	Rat	Arg 1	[37]
	Alzheimer’s disease (AD)	CSF/blood/tissue	Human	β-amiloyd; miR-193b, miR-132 [↓]	[39,41]
	Parkinson’s disease (PD)	Cell culture	Mouse	α-sinucleyn	[42]
	Multiple Sclerosis (MS)	Serum/cell culture	Mouse/human	Beta-2-microglobulin, MHC-II, CD40,ICOSL; miR-122-5p, miR-196b-5p, miR-301a-3p, miR-5p [↓]	[43,44]
	Cardiovascular disease (CVDs)	Cell culture/pericardial fluid	Rat/mouse	Hsp90, IL-6; miR-21-3p [↑]	[46,47]
	Immunopathology	Cell culture	Human	mtDNA	[48]

VNN1: Vanin-1; MMP: Matrix metalloproteinase.

In conclusion, EVs are important intercellular communication mediators during pathology and physiology events. It would be interesting in future studies to investigate the particularly role of EVs in the development of diseases. However, little data support the function of EVs in physiopathological processes suggests the need for further research.