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Qi GX, Zhao RX, Gao C, Ma ZY, Wang S, Xu J. Recent advances and challenges in colorectal cancer: From molecular research to treatment. World J Gastroenterol 2025; 31:106964. [DOI: 10.3748/wjg.v31.i21.106964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/11/2025] [Revised: 04/22/2025] [Accepted: 05/26/2025] [Indexed: 06/06/2025] Open
Abstract
Colorectal cancer (CRC) ranks among the top causes of cancer-related fatalities globally. Recent progress in genomics, proteomics, and bioinformatics has greatly improved our comprehension of the molecular underpinnings of CRC, paving the way for targeted therapies and immunotherapies. Nonetheless, obstacles such as tumor heterogeneity and drug resistance persist, hindering advancements in treatment efficacy. In this context, the integration of artificial intelligence (AI) and organoid technology presents promising new avenues. AI can analyze genetic and clinical data to forecast disease risk, prognosis, and treatment responses, thereby expediting drug development and tailoring treatment plans. Organoids replicate the genetic traits and biological behaviors of tumors, acting as platforms for drug testing and the formulation of personalized treatment approaches. Despite notable strides in CRC research and treatment - from genetic insights to therapeutic innovations - numerous challenges endure, including the intricate tumor microenvironment, tumor heterogeneity, adverse effects of immunotherapies, issues related to AI data quality and privacy, and the need for standardization in organoid culture. Future initiatives should concentrate on clarifying the pathogenesis of CRC, refining AI algorithms and organoid models, and creating more effective therapeutic strategies to alleviate the global impact of CRC.
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Affiliation(s)
- Gao-Xiu Qi
- Department of Pathology, Qingdao Central Hospital, University of Health and Rehabilitation Sciences (Qingdao Central Medical Group), Qingdao 266042, Shandong Province, China
| | - Rui-Xia Zhao
- Department of Pathology, Qingdao Central Hospital, University of Health and Rehabilitation Sciences (Qingdao Central Medical Group), Qingdao 266042, Shandong Province, China
| | - Chen Gao
- Department of Pathology, Qingdao Central Hospital, University of Health and Rehabilitation Sciences (Qingdao Central Medical Group), Qingdao 266042, Shandong Province, China
| | - Zeng-Yan Ma
- Department of Pathology, Qingdao Central Hospital, University of Health and Rehabilitation Sciences (Qingdao Central Medical Group), Qingdao 266042, Shandong Province, China
| | - Shang Wang
- Department of Pathology, School of Basic Medicine, Qingdao University, Qingdao 266071, Shandong Province, China
| | - Jing Xu
- Department of Pathology, Qingdao Central Hospital, University of Health and Rehabilitation Sciences (Qingdao Central Medical Group), Qingdao 266042, Shandong Province, China
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Qi LY, Li BW, Chen JQ, Bian HP, Xue JN, Zhao HX. Research status and trends of deep learning in colorectal cancer (2011-2023): Bibliometric analysis and visualization. World J Gastrointest Oncol 2025; 17:103667. [DOI: 10.4251/wjgo.v17.i5.103667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Revised: 01/08/2025] [Accepted: 02/28/2025] [Indexed: 05/15/2025] Open
Abstract
BACKGROUND Colorectal cancer (CRC) is the third-most prevalent cancer and the cancer with the second-highest mortality rate worldwide, representing a high public health burden. Deep learning (DL) offers advantages in the diagnosis, identification, localization, classification and prognosis of CRC patients. However, few bibliometric analyses of research hotspots and trends in the field have been performed.
AIM To use bibliometric approaches to analyze and visualize the current research state and development trend of DL in CRC as well as to anticipate future research directions and hotspots.
METHODS Datasets were retrieved from the Web of Science Core Collection for the period January 2011 to December 2023. Scimago Graphica (1.0.45), VOSviewer (1.6.20) and CiteSpace (6.3.1) were used to analyze and visualize the nation, institution, journal, author, reference and keyword indicators. Origin (2022) was utilized for plotting, and Excel (2021) was used to construct the tables.
RESULTS A total of 1275 publications in 538 journals from 74 countries and 2267 institutions were collected. The number of annual publications has increased over time. China (371, 29.1%), the United States (265, 20.8%) and Japan (155, 12.2%) contributed significantly to the number of articles published, accounting for 62.1% of the total publications. The United States had the strongest ties to other nations. Sun Yat-sen University in China had the highest number of publications (32). The journal with the most publications was Scientific Reports (34, Q2), whereas Gastrointestinal Endoscopy had the most co-citations (1053, Q1). Kather JN, was the author with the most articles (12) and co-citations (287). The most frequently cited reference was Deep Residual Learning for Image Recognition. Keywords were divided into six clusters, with “colorectal cancer” (12.34) having the highest outbreak intensity.
CONCLUSION This study highlights the current status and most active directions of the use of DL in CRC. This approach has important applications in the identification, diagnosis, localization, classification and prognosis of the disease and will remain a central focus in the future.
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Affiliation(s)
- Lu-Ying Qi
- Department of Radiology, The First Affiliated Hospital of Huzhou University, Huzhou 313000, Zhejiang Province, China
| | - Bai-Wang Li
- Center of Gastrointestinal Endoscopy, The Fourth People’s Hospital of Jinan, Jinan 250031, Shandong Province, China
| | - Jie-Qiong Chen
- Department of Radiology, The First Affiliated Hospital of Huzhou University, Huzhou 313000, Zhejiang Province, China
| | - Hu-Po Bian
- Department of Radiology, The First Affiliated Hospital of Huzhou University, Huzhou 313000, Zhejiang Province, China
| | - Jing-Nan Xue
- Department of Radiology, The First Affiliated Hospital of Huzhou University, Huzhou 313000, Zhejiang Province, China
| | - Hong-Xing Zhao
- Department of Radiology, The First Affiliated Hospital of Huzhou University, Huzhou Key Laboratory of Precise Diagnosis and Treatment of Urinary Tumors, Huzhou 313000, Zhejiang Province, China
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Prezja F, Annala L, Kiiskinen S, Lahtinen S, Ojala T, Ruusuvuori P, Kuopio T. Improving performance in colorectal cancer histology decomposition using deep and ensemble machine learning. Heliyon 2024; 10:e37561. [PMID: 39309850 PMCID: PMC11415691 DOI: 10.1016/j.heliyon.2024.e37561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Accepted: 09/05/2024] [Indexed: 09/25/2024] Open
Abstract
In routine colorectal cancer management, histologic samples stained with hematoxylin and eosin are commonly used. Nonetheless, their potential for defining objective biomarkers for patient stratification and treatment selection is still being explored. The current gold standard relies on expensive and time-consuming genetic tests. However, recent research highlights the potential of convolutional neural networks (CNNs) to facilitate the extraction of clinically relevant biomarkers from these readily available images. These CNN-based biomarkers can predict patient outcomes comparably to golden standards, with the added advantages of speed, automation, and minimal cost. The predictive potential of CNN-based biomarkers fundamentally relies on the ability of CNNs to accurately classify diverse tissue types from whole slide microscope images. Consequently, enhancing the accuracy of tissue class decomposition is critical to amplifying the prognostic potential of imaging-based biomarkers. This study introduces a hybrid deep transfer learning and ensemble machine learning model that improves upon previous approaches, including a transformer and neural architecture search baseline for this task. We employed a pairing of the EfficientNetV2 architecture with a random forest classification head. Our model achieved 96.74% accuracy (95% CI: 96.3%-97.1%) on the external test set and 99.89% on the internal test set. Recognizing the potential of these models in the task, we have made them publicly available.
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Affiliation(s)
- Fabi Prezja
- University of Jyväskylä, Faculty of Information Technology, Jyväskylä, 40014, Finland
| | - Leevi Annala
- University of Helsinki, Faculty of Science, Department of Computer Science, Helsinki, Finland
- University of Helsinki, Faculty of Agriculture and Forestry, Department of Food and Nutrition, Helsinki, Finland
| | - Sampsa Kiiskinen
- University of Jyväskylä, Faculty of Information Technology, Jyväskylä, 40014, Finland
| | - Suvi Lahtinen
- University of Jyväskylä, Faculty of Information Technology, Jyväskylä, 40014, Finland
- University of Jyväskylä, Faculty of Mathematics and Science, Department of Biological and Environmental Science, Jyväskylä, 40014, Finland
| | - Timo Ojala
- University of Jyväskylä, Faculty of Information Technology, Jyväskylä, 40014, Finland
| | - Pekka Ruusuvuori
- University of Turku, Institute of Biomedicine, Cancer Research Unit, Turku, 20014, Finland
- Turku University Hospital, FICAN West Cancer Centre, Turku, 20521, Finland
| | - Teijo Kuopio
- University of Jyväskylä, Department of Biological and Environmental Science, Jyväskylä, 40014, Finland
- Hospital Nova of Central Finland, Department of Pathology, Jyväskylä, 40620, Finland
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Kiran N, Yashaswini C, Maheshwari R, Bhattacharya S, Prajapati BG. Advances in Precision Medicine Approaches for Colorectal Cancer: From Molecular Profiling to Targeted Therapies. ACS Pharmacol Transl Sci 2024; 7:967-990. [PMID: 38633600 PMCID: PMC11019743 DOI: 10.1021/acsptsci.4c00008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 03/06/2024] [Accepted: 03/07/2024] [Indexed: 04/19/2024]
Abstract
Precision medicine is transforming colorectal cancer treatment through the integration of advanced technologies and biomarkers, enhancing personalized and effective disease management. Identification of key driver mutations and molecular profiling have deepened our comprehension of the genetic alterations in colorectal cancer, facilitating targeted therapy and immunotherapy selection. Biomarkers such as microsatellite instability (MSI) and DNA mismatch repair deficiency (dMMR) guide treatment decisions, opening avenues for immunotherapy. Emerging technologies such as liquid biopsies, artificial intelligence, and machine learning promise to revolutionize early detection, monitoring, and treatment selection in precision medicine. Despite these advancements, ethical and regulatory challenges, including equitable access and data privacy, emphasize the importance of responsible implementation. The dynamic nature of colorectal cancer, with its tumor heterogeneity and clonal evolution, underscores the necessity for adaptive and personalized treatment strategies. The future of precision medicine in colorectal cancer lies in its potential to enhance patient care, clinical outcomes, and our understanding of this intricate disease, marked by ongoing evolution in the field. The current reviews focus on providing in-depth knowledge on the various and diverse approaches utilized for precision medicine against colorectal cancer, at both molecular and biochemical levels.
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Affiliation(s)
- Neelakanta
Sarvashiva Kiran
- Department
of Biotechnology, School of Applied Sciences, REVA University, Bengaluru, Karnataka 560064, India
| | - Chandrashekar Yashaswini
- Department
of Biotechnology, School of Applied Sciences, REVA University, Bengaluru, Karnataka 560064, India
| | - Rahul Maheshwari
- School
of Pharmacy and Technology Management, SVKM’s
Narsee Monjee Institute of Management Studies (NMIMS) Deemed-to-University, Green Industrial Park, TSIIC,, Jadcherla, Hyderabad 509301, India
| | - Sankha Bhattacharya
- School
of Pharmacy and Technology Management, SVKM’S
NMIMS Deemed-to-be University, Shirpur, Maharashtra 425405, India
| | - Bhupendra G. Prajapati
- Shree.
S. K. Patel College of Pharmaceutical Education and Research, Ganpat University, Kherva, Gujarat 384012, India
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