Rapid Communication
Copyright ©2008 The WJG Press and Baishideng.
World J Gastroenterol. Mar 28, 2008; 14(12): 1925-1930
Published online Mar 28, 2008. doi: 10.3748/wjg.14.1925
Table 1 Allele frequency of poly-T tract
Number (n)Number (frequencies) of poly-T tract
T5T6T7T9
2n = 26410 (0.0379)4 (0.0152)247 (0.9356)3 (0.0114)
Table 2 Allele frequency of TG-repeat polymorphisms
Number (2n)Number (frequencies) of TG-repeats
TG10TG11TG12TG13
2643 (0.0114)151 (0.572)108 (0.4091)2 (0.0076)
TG-repeat number (frequencies) in individuals with alleles
11/1111/1212/1211/1310/12
13261 (0.4621)28 (0.2121)39 (0.2955)2 (0.0152)2 (0.0152)
Table 3 Genotypes and allele frequencies at M470V polymorphic site
Number (2n)Number (frequencies) of individuals with genotypes
Number (frequencies) of individuals with alleles
MMMVVVMV
26428 (0.2121)60 (0.4545)44 (0.3333)116 (0.4394)148 (0.5606)
Table 4 Linkage of poly-T, TG-repeats and M470V
Linkage haplotypes2n (frequencies) (2n = 264)
T7-TG11-V470125 (0.4735)
T7-TG12-M47077 (0.2917)
T7-TG11-M47026 (0.0985)
T7-TG12-V47018 (0.0682)
T5-TG12-M4708 (0.0303)
T5-TG12-V4702 (0.0076)
T7-TG13-M4702 (0.0076)
T9-TG10-M4701 (0.0038)
T9-TG10-V4701 (0.0038)
T6-TG12-M4702 (0.0076)
T6-TG12-V4701 (0.0038)
T6-TG11-V4701 (0.0038)
Table 5 Frequencies of TG-repeats and M470V haplotypes
M470V(TG) nn/frequencies (n = 132)
V/V11/1135 (0.2625)
M/M12/1227 (0.2045)
M/V11/1126 (0.1970)
M/V11/1220 (0.1515)
M/V12/1211 (0.0833)
V/V11/128 (0.0606)
M/V11/132 (0.0152)
V/V12/121 (0.0076)
M/M10/121 (0.0076)
M/V10/121 (0.0076)