Basic Study
Copyright ©The Author(s) 2025.
World J Gastroenterol. Jul 7, 2025; 31(25): 107478
Published online Jul 7, 2025. doi: 10.3748/wjg.v31.i25.107478
Figure 1
Figure 1 Cell mapping in colorectal cancer. A: Plot of RNA feature counts (nFeature_RNA) vs total RNA abundance (nCount_RNA) correlation after quality control (QC); plot of nCount_RNA vs mitochondrial percentage after QC; plot of nFeature_RNA vs mitochondrial percentage after QC; B: Violin plots of nFeature_RNA, nCount_RNA, mitochondrial gene percentage, and erythrocyte gene percentage for each sample after QC; C: Volcano plot of highly variable genes. The graph shows 23476 genes in all cells; red dots indicate highly variable genes, and the top 10 most variable genes are labeled in the graph; D: Uniform manifold approximation and projection distribution map of 16 cell clusters identified after cluster analysis and dimensionality reduction analysis; E: Uniform manifold approximation and projection distribution map of 11 cell subclusters identified after annotation; F: Expression bubble plots of marker genes in 11 cell subgroups; G: Ratio of the 11 cell subpopulations in tumor tissues and normal tissues. nFeature_RNA: RNA feature counts; nCount_RNA: Total RNA abundance; UMAP: Uniform manifold approximation and projection; NK: Natural killer.