Identification and prediction of novel non-coding and coding RNA-associated competing endogenous RNA networks in colorectal cancer

doi:10.3748/wjg.v24.i46.5259

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World Journal of Gastroenterology

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World J Gastroenterol. Dec 14, 2018; 24(46): 5259-5270
Published online Dec 14, 2018. doi: 10.3748/wjg.v24.i46.5259

Table 1 Putative differentially expressed long-noncoding RNAs that may target differentially expressed microRNAs

DEmiRNAs	DElncRNAs	DEmiRNAs	DElncRNAs
Hsa-miR-193b	IGF2-AS, H19, MIR31HG, WT1-AS, MUC19, UCA1, POU6F2-AS1, TSSC1-IT1, MRPL23-AS1, SPATA13-AS1, HOTAIR, WASIR2, DLX6-AS1, CRNDE, MALAT1, KCNQ1OT1	Hsa-miR-182	AC009336.1, C5orf64, AL360004.1, AC010336.2, SFTA1P, LINC00402, RBMS3-AS3, ADAMTS9-AS2, LIFR-AS1, FRMD6-AS2
Hsa-miR-145	SHANK2-AS3, WT1-AS, MUC19, ST7-AS2, MRPL23-AS1, FAM155A-IT1, FAM41C, MIR205HG, DLX6-AS1, OSBPL10-AS1, ERVH48-1, CRNDE, PVT1, LINC00491, MALAT1, NKX2-1-AS1, KCNQ1OT1, AL139147.1, ITCH-IT1, LINC00452	Hsa-miR-106a	C20orf166-AS1, AC010336.2, HCG23, JAZF1-AS1, LINC00484, ADAMTS9-AS2, ARHGEF26-AS1, LIFR-AS1, LINC00461, LINC00507
Hsa-miR-187	SHANK2-AS3, MUC19, BTBD9-AS1, LINC00452, FAM41C, ATP11A-AS1, ERVH48-1, POU6F2-AS2, ARHGEF26-AS1, PVT1	Hsa-miR-152	C5orf64, AL360004.1, FAM95B1, LINC00484, ADAMTS9-AS2
Hsa-miR-150	IGF2-AS, C2orf48, SHANK2-AS3, C15orf54, HECW1-IT1, LINC00523, MUC19, ST7-OT4, CLDN10-AS1, TSSC1-IT1, MRPL23-AS1, BTBD9-AS1, LINC00355, LMO7-AS1, HOTAIR, MIR205HG, WASIR2, DLX6-AS1, LINC00460, LATS2-AS1, BOK-AS1, DSCAM-AS1, CAMTA1-IT1, PVT1, LINC00491, HULC, MALAT1, C8orf49, KCNQ1OT1, AL139147.1, AL391421.1	Hsa-miR-338	GRIK1-AS1, C5orf64, AC010336.2, LINC00473, FAM95B1, AC110491.1, LINC00402, LINC00484, ADAMTS9-AS2, LINC00461, FRMD6-AS2, PWRN1
Hsa-miR-375	C15orf54, C17orf77, WT1-AS, MUC19, STEAP2-AS1, LMO7-AS1, HOTAIR, OSBPL10-AS1, POU6F2-AS2, MACROD2-AS1, DLEU7-AS1, MALAT1, C8orf49, KCNQ1OT1, AL139147.1	Hsa-miR-17	C20orf166-AS1, C5orf64, AC010336.2, HCG23, JAZF1-AS1, LINC00402, ARHGEF26-AS1
Hsa-miR-183	C20orf166-AS1, AL360004.1, FAM95B1, CHL1-AS2, ADAMTS9-AS2, LINC00507	Hsa-miR-424	C5orf64, AL360004.1, LINC00473, LINC00092, SFTA1P, LINC00484, LINC00461, PWRN1
Hsa-miR-98	LINC00488, FAM95B1, AC110491.1, JAZF1-AS1, LINC00484, ADAMTS9-AS2, PWRN1	Hsa-miR-21	C5orf64, AL360004.1, LINC00488, JAZF1-AS1, ADAMTS9-AS1, ARHGEF26-AS1, PWRN1
Hsa-miR-144	AL360004.1, AC010336.2, LINC00488, ADAMTS9-AS1, ADAMTS9-AS2, LIFR-AS1, LINC00461, PWRN1	Hsa-miR-454	C20orf166-AS1, ADAMTS9-AS1, ADAMTS9-AS2
Hsa-miR-32	JAZF1-AS1, LINC00484, ADAMTS9-AS2, ARHGEF26-AS1	Hsa-miR-141	C5orf64, AC010336.2, FAM95B1, AC110491.1, LINC00402, LINC00484, ADAMTS9-AS2, ARHGEF26-AS1, LINC00461
Hsa-miR-206	LINC00488, FAM95B1, LINC00092, SFTA1P, LINC00163, LINC00484, AL138995.1, LIFR-AS1, FRMD6-AS2	Hsa-miR-372	C20orf166-AS1, AC010336.2, HCG23, JAZF1-AS1, LINC00484, ADAMTS9-AS2, ARHGEF26-AS1, LIFR-AS1, LINC00461

DElncRNAs: Differentially expressed long-noncoding RNAs; DEmiRNAs: Differentially expressed microRNAs.

Citation: Liang Y, Zhang C, Ma MH, Dai DQ. Identification and prediction of novel non-coding and coding RNA-associated competing endogenous RNA networks in colorectal cancer. World J Gastroenterol 2018; 24(46): 5259-5270
URL: https://www.wjgnet.com/1007-9327/full/v24/i46/5259.htm
DOI: https://dx.doi.org/10.3748/wjg.v24.i46.5259