Molecular epidemiology and putative origin of hepatitis C virus in random volunteers from Argentina

doi:10.3748/wjg.v19.i35.5813

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World Journal of Gastroenterology

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1007-9327

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Gastroenterol. Sep 21, 2013; 19(35): 5813-5827
Published online Sep 21, 2013. doi: 10.3748/wjg.v19.i35.5813

Table 4 Subtype assignment of each hepatitis C virus Argentinian sequence obtained in this study

Isolate	NS5B genotype	Closest GB deposited sequences	Origin
532920	1a	DQ8893001bos	United States (Massachusetts, Boston area)
533511	1a	EU155310usa EU155290usa AY683093usa DQ8893001usa	United States
P606	1a	AY682755alb AY683103alb AY682775alb DQ889318bos DQ889300bos	United States (Albany, NY) United States (Massachusetts, Boston area)
T294	1a	DQ313467arg DQ313464arg DQ313465arg DQ313466arg DQ889300bos	Argentina United States (Massachusetts, Boston area)
T299	1a	DQ889300bos DQ889296bos AY172640arg DQ889296bos	United States (Massachusetts, Boston area) Argentina United States (Massachusetts, Boston area)
533655	1b	AF506602rus DQ345627mad	Russia (Western Siberia) Madagascar (Antananarivo)
533771	1b	DQ508484tun DQ508481tun DQ508479tun EF608896bcn	Tunisia (Tunis) Spain (Barcelona)
P237	1b	EU155224ten EU155304ten	United States (Tennessee)
P819	1b	AY835061chn DQ249500usa DQ249499usa DQ345626mad	China (Foshan) United States (factor VIII concentrate) Madagascar (Antananarivo)
P899	1b	DQ345626mad AJ132997ger AY682461alb AY683105alb DQ249501usa	Madagascar (Antananarivo) Germany United States (Albany, NY) United States (factor VIII concentrate)
532441	2c	L38363swi D31981ita	Switzerland Italy (France from Italians)
532996	2c	L38365swi AF15995mar AF515996mar DQ220866tou	Switzerland France (Marseille) France (Toulouse)
532978 534588	2c	D31975ita AY172649ita D50409(BEBE1)ita	Italy (France from Italians)
T300	2c	DQ220870fr	France (Toulouse)
T301	2c	AF516025mar EF195026tall AY944641gen D31977ita	France (Marseille) Estonia (Tallinn) Italy (Genoa) Italy (France from Italians)
533570	2j	AY89526que AY894529que AY894550que EF116050que DQ220919tou DQ220918tou D86530bcn	Canada (Quebec) France (Toulouse) Spain (Barcelona)
T302	3a	EF116078que AJ291256ssd AJ867113arg AJ867159arg AJ867116arg AJ867115arg AJ867114arg	Canada (Quebec) France (Seine Saint Denis district) Argentina

The 3^rd column from the left shows the GenBank (GB) sequences that are most similar to each of our samples, and the 4^th column from the left exhibits the origin of the GB already deposited sequences.

Citation: del Pino N, Oubiña JR, Rodríguez-Frías F, Esteban JI, Buti M, Otero T, Gregori J, García-Cehic D, Camos S, Cubero M, Casillas R, Guàrdia J, Esteban R, Quer J. Molecular epidemiology and putative origin of hepatitis C virus in random volunteers from Argentina. World J Gastroenterol 2013; 19(35): 5813-5827
URL: https://www.wjgnet.com/1007-9327/full/v19/i35/5813.htm
DOI: https://dx.doi.org/10.3748/wjg.v19.i35.5813