Basic Research
Copyright ©2005 Baishideng Publishing Group Inc.
World J Gastroenterol. Feb 28, 2005; 11(8): 1131-1140
Published online Feb 28, 2005. doi: 10.3748/wjg.v11.i8.1131
Table 1 FISH probes.
NameTargetReference
Eub338Virtually all Bacteria, Kingdom Eubacteria6
Alf1bAlpha group of Proteobacteria: Rhodobacter, Acetobacter, Paracoccus7
Beta42aBeta subclass of Proteobacteria: Rhodocyclus, Bordetella, Neisseria,Thiobacillus, Alcaligenes and other7
Gam42aGamma subclass of Proteobacteria: Enterobacteriaceae, Proteus, Legionella, Azotobacter7
EbacEnterobacteriaceae8
Ec1531Escherichia coli9
Y16s-69Yersinia species10
Srb385Sulfate reducing bacteria11
SgdDesulfotomaculum subgroup12
Hpy-1Helicobacter pylori epsilon subclass of Proteobacteria13
Arc1430Arcobacter ssp. epsilon subclass of Proteobacteria14
HGCGram-positive bacteria with high G+C content:Actinobacteria15
LGCGram-positive bacteria with low G+C content: Firmicutes16
SfbSegmented filamentous bacteria17
ErecClostridium coccoides - Eubacterium rectale group18
LachSubgroup of Erec19
EhalSubgroup of Erec19
Chis150Clostridium histolyticum group (Incl. Clostridiumperfringens and Clostridium botulinum)18
Clit135Clostridium lituseburense group (incl. Clostridium difficile)18
Lab158Lactobacillus and Enterococcus group20
Strc493Streptococcus group18
Enc131Enterococcus spp and other21
EfaecEnterococcus faecalis, Enterococcus sulfuricus22
Ato291Atopobium, Coriobacterium, Eggerthella and Collinsella spp23
Cor653Coriobacterium group23
EcylEubacterium cylindroides, Clostridium innocuum, Eubacterium biforme, Eubacterium tortuosum and other19
PhascoPhascolarctobacterium faecium, Acidaminococcus fermentans, and Succiniclasticum ruminis19
VeilVeillonella group19
Rbro, RflaClostridium sporosphaeroides, Ruminococcus bromii, andClostridium leptum, Ruminococcus albus and Ruminococcus flavefaciens19
UroA, UroBRuminococcus obeum-like bacteria (subgroup of Erec)24
Ser1410Genus Brachyspira25
Bif164Bifidobacterium26
CF319aCytophaga-Flavobacteria group27
Bac303Bacteroides/Prevotella group27
Bfra602Bacteroides fragilis group18
Bdis656Bacteroides distasonis group18
FprauFusobacterium prausnitzii group28
Dss658Sulfate reducing bacteria subgroup of delta proteobacteria29
Arch915Archaea30
Non338Nonsense probe used to test for nonspecific binding7