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Vo LT, Vu T, Pham TN, Trinh TH, Nguyen TT. Machine learning-based models for prediction of in-hospital mortality in patients with dengue shock syndrome. World J Methodol 2025; 15:101837. [DOI: 10.5662/wjm.v15.i3.101837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/28/2024] [Revised: 11/03/2024] [Accepted: 11/19/2024] [Indexed: 03/06/2025] Open
Abstract
BACKGROUND Severe dengue children with critical complications have been attributed to high mortality rates, varying from approximately 1% to over 20%. To date, there is a lack of data on machine-learning-based algorithms for predicting the risk of in-hospital mortality in children with dengue shock syndrome (DSS).
AIM To develop machine-learning models to estimate the risk of death in hospitalized children with DSS.
METHODS This single-center retrospective study was conducted at tertiary Children’s Hospital No. 2 in Viet Nam, between 2013 and 2022. The primary outcome was the in-hospital mortality rate in children with DSS admitted to the pediatric intensive care unit (PICU). Nine significant features were predetermined for further analysis using machine learning models. An oversampling method was used to enhance the model performance. Supervised models, including logistic regression, Naïve Bayes, Random Forest (RF), K-nearest neighbors, Decision Tree and Extreme Gradient Boosting (XGBoost), were employed to develop predictive models. The Shapley Additive Explanation was used to determine the degree of contribution of the features.
RESULTS In total, 1278 PICU-admitted children with complete data were included in the analysis. The median patient age was 8.1 years (interquartile range: 5.4-10.7). Thirty-nine patients (3%) died. The RF and XGboost models demonstrated the highest performance. The Shapley Addictive Explanations model revealed that the most important predictive features included younger age, female patients, presence of underlying diseases, severe transaminitis, severe bleeding, low platelet counts requiring platelet transfusion, elevated levels of international normalized ratio, blood lactate and serum creatinine, large volume of resuscitation fluid and a high vasoactive inotropic score (> 30).
CONCLUSION We developed robust machine learning-based models to estimate the risk of death in hospitalized children with DSS. The study findings are applicable to the design of management schemes to enhance survival outcomes of patients with DSS.
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Affiliation(s)
- Luan Thanh Vo
- Department of Infectious Diseases, Children's Hospital No. 2, Ho Chi Minh City 700000, Viet Nam
| | - Thien Vu
- AI Nutrition Project, National Institutes of Biomedical Innovation, Health and Nutrition (NIBIOHN), Osaka 5670001, Japan
- NCD Epidemiology Research Center, Shiga University of Medical Science, Otsu, Shiga 5200003, Japan
| | - Thach Ngoc Pham
- Department of Infectious Diseases, Children's Hospital No. 2, Ho Chi Minh City 700000, Viet Nam
| | - Tung Huu Trinh
- Department of Infectious Diseases, Children's Hospital No. 2, Ho Chi Minh City 700000, Viet Nam
| | - Thanh Tat Nguyen
- Department of Infectious Diseases, Children's Hospital No. 2, Ho Chi Minh City 700000, Viet Nam
- Department of Tuberculosis and Epidemiology, Woolcock Institute of Medical Research, Ho Chi Minh City 700000, Viet Nam
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Schwartz B, Giesemann J, Delgadillo J, Schaffrath J, Hehlmann MI, Moggia D, Baumann C, Lutz W. Comparing three neural networks to predict depression treatment outcomes in psychological therapies. Behav Res Ther 2025; 190:104752. [PMID: 40286684 DOI: 10.1016/j.brat.2025.104752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 03/21/2025] [Accepted: 04/21/2025] [Indexed: 04/29/2025]
Abstract
OBJECTIVE Artificial neural networks have been used in various fields to solve classification and prediction tasks. However, it is unclear if these may be adequate methods to predict psychological treatment outcomes. This study aimed to evaluate the prognostic accuracy of neural networks using psychological treatment outcomes data. METHOD Three neural network models (TensorFlow, nnet, and monmlp) and a generalised linear regression model were compared in their ability to predict post-treatment remission of depression symptoms in a large naturalistic sample (n = 69,489) of patients accessing low intensity cognitive behavioural therapy. Prognostic accuracy was evaluated using the area under the curve (AUC) in an external cross-validation design. RESULTS The AUC of the neural networks in an external test sample ranged from 0.64 to 0.65 and the AUC of the linear regression model was 0.63. CONCLUSION Neural networks can help predict symptom remission in new samples with moderate accuracy, although these models were no more accurate than a simpler inferential statistical linear regression model.
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Affiliation(s)
| | | | | | | | | | - Danilo Moggia
- Department of Psychology, Trier University, Germany.
| | | | - Wolfgang Lutz
- Department of Psychology, Trier University, Germany.
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Hage Chehade A, Abdallah N, Marion JM, Hatt M, Oueidat M, Chauvet P. Reconstruction-based approach for chest X-ray image segmentation and enhanced multi-label chest disease classification. Artif Intell Med 2025; 165:103135. [PMID: 40300339 DOI: 10.1016/j.artmed.2025.103135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Revised: 03/20/2025] [Accepted: 04/13/2025] [Indexed: 05/01/2025]
Abstract
U-Net is a commonly used model for medical image segmentation. However, when applied to chest X-ray images that show pathologies, it often fails to include these critical pathological areas in the generated masks. To address this limitation, in our study, we tackled the challenge of precise segmentation and mask generation by developing a novel approach, using CycleGAN, that encompasses the areas affected by pathologies within the region of interest, allowing the extraction of relevant radiomic features linked to pathologies. Furthermore, we adopted a feature selection approach to focus the analysis on the most significant features. The results of our proposed pipeline are promising, with an average accuracy of 92.05% and an average AUC of 89.48% for the multi-label classification of effusion and infiltration acquired from the ChestX-ray14 dataset, using the XGBoost model. Furthermore, applying our methodology to the classification of the 14 diseases in the ChestX-ray14 dataset resulted in an average AUC of 83.12%, outperforming previous studies. This research highlights the importance of effective pathological mask generation and features selection for accurate classification of chest diseases. The promising results of our approach underscore its potential for broader applications in the classification of chest diseases.
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Affiliation(s)
| | - Nassib Abdallah
- LARIS, University of Angers, France; LaTIM, INSERM UMR 1101, University of Brest, France
| | | | - Mathieu Hatt
- LaTIM, INSERM UMR 1101, University of Brest, France
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Mikhail D, Milad D, Antaki F, Hammamji K, Qian CX, Rezende FA, Duval R. The Role of Artificial Intelligence in Epiretinal Membrane Care: A Scoping Review. OPHTHALMOLOGY SCIENCE 2025; 5:100689. [PMID: 40182981 PMCID: PMC11964620 DOI: 10.1016/j.xops.2024.100689] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 12/02/2024] [Accepted: 12/16/2024] [Indexed: 04/05/2025]
Abstract
Topic In ophthalmology, artificial intelligence (AI) demonstrates potential in using ophthalmic imaging across diverse diseases, often matching ophthalmologists' performance. However, the range of machine learning models for epiretinal membrane (ERM) management, which differ in methodology, application, and performance, remains largely unsynthesized. Clinical Relevance Epiretinal membrane management relies on clinical evaluation and imaging, with surgical intervention considered in cases of significant impairment. AI analysis of ophthalmic images and clinical features could enhance ERM detection, characterization, and prognostication, potentially improving clinical decision-making. This scoping review aims to evaluate the methodologies, applications, and reported performance of AI models in ERM diagnosis, characterization, and prognostication. Methods A comprehensive literature search was conducted across 5 electronic databases including Ovid MEDLINE, EMBASE, Cochrane Central Register of Controlled Trials, Cochrane Database of Systematic Reviews, and Web of Science Core Collection from inception to November 14, 2024. Studies pertaining to AI algorithms in the context of ERM were included. The primary outcomes measured will be the reported design, application in ERM management, and performance of each AI model. Results Three hundred ninety articles were retrieved, with 33 studies meeting inclusion criteria. There were 30 studies (91%) reporting their training and validation methods. Altogether, 61 distinct AI models were included. OCT scans and fundus photographs were used in 26 (79%) and 7 (21%) papers, respectively. Supervised learning and both supervised and unsupervised learning were used in 32 (97%) and 1 (3%) studies, respectively. Twenty-seven studies (82%) developed or adapted AI models using images, whereas 5 (15%) had models using both images and clinical features, and 1 (3%) used preoperative and postoperative clinical features without ophthalmic images. Study objectives were categorized into 3 stages of ERM care. Twenty-three studies (70%) implemented AI for diagnosis (stage 1), 1 (3%) identified ERM characteristics (stage 2), and 6 (18%) predicted vision impairment after diagnosis or postoperative vision outcomes (stage 3). No articles studied treatment planning. Three studies (9%) used AI in stages 1 and 2. Of the 16 studies comparing AI performance to human graders (i.e., retinal specialists, general ophthalmologists, and trainees), 10 (63%) reported equivalent or higher performance. Conclusion Artificial intelligence-driven assessments of ophthalmic images and clinical features demonstrated high performance in detecting ERM, identifying its morphological properties, and predicting visual outcomes following ERM surgery. Future research might consider the validation of algorithms for clinical applications in personal treatment plan development, ideally to identify patients who might benefit most from surgery. Financial Disclosures The author(s) have no proprietary or commercial interest in any materials discussed in this article.
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Affiliation(s)
- David Mikhail
- Temerty Faculty of Medicine, University of Toronto, Toronto, Canada
- Department of Ophthalmology, University of Montreal, Montreal, Canada
| | - Daniel Milad
- Department of Ophthalmology, University of Montreal, Montreal, Canada
- Department of Ophthalmology, Hôpital Maisonneuve-Rosemont, Montreal, Canada
- Department of Ophthalmology, Centre Hospitalier de l'Université de Montréal (CHUM), Montreal, Canada
| | - Fares Antaki
- Department of Ophthalmology, University of Montreal, Montreal, Canada
- Department of Ophthalmology, Centre Hospitalier de l'Université de Montréal (CHUM), Montreal, Canada
| | - Karim Hammamji
- Department of Ophthalmology, University of Montreal, Montreal, Canada
- Department of Ophthalmology, Centre Hospitalier de l'Université de Montréal (CHUM), Montreal, Canada
| | - Cynthia X. Qian
- Department of Ophthalmology, University of Montreal, Montreal, Canada
- Department of Ophthalmology, Hôpital Maisonneuve-Rosemont, Montreal, Canada
| | - Flavio A. Rezende
- Department of Ophthalmology, University of Montreal, Montreal, Canada
- Department of Ophthalmology, Hôpital Maisonneuve-Rosemont, Montreal, Canada
| | - Renaud Duval
- Department of Ophthalmology, University of Montreal, Montreal, Canada
- Department of Ophthalmology, Hôpital Maisonneuve-Rosemont, Montreal, Canada
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Rodrigues M, Cezar E, Dos Santos GLAA, Reis AS, de Oliveira RB, de Melo Teixeira L, Nanni MR. Unveiling the potential of Brachiaria ruziziensis: Comparative analysis of multivariate and machine learning models for biomass and NPK prediction using Vis-NIR-SWIR spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2025; 334:125930. [PMID: 39987605 DOI: 10.1016/j.saa.2025.125930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Accepted: 02/17/2025] [Indexed: 02/25/2025]
Abstract
This study investigated the development and validation of predictive models for estimating foliar nitrogen (N), phosphorus (P), and potassium (K) contents, along with shoot dry mass (SDM) of Brachiaria ruziziensis L. The approach utilized Vis-NIR-SWIR spectroscopy coupled with multivariate statistical techniques (PLS, PCR) and machine learning algorithms (SVM, RF). A triple-factorial, completely randomized design with ten replications per treatment was employed in a greenhouse setting. Treatments included type of input (limestone-mining coproducts), input particle size (filler and powder), and soil class (Arenosol and Ferralsol). Following input incubation, B. ruziziensis was sown. Forty days later, foliar spectra and leaves were collected. Chemical analysis determined NPK content, along with SDM. The study developed predictive models utilizing Vis-NIR-SWIR spectroscopy, Partial Least Squares (PLS), and machine learning algorithms like Support Vector Machine (SVM) and Random Forest (RF) to estimate foliar N, P, K, and biomass. Model adjustments achieved R2p > 0.70 and RPDp > 1.80 for PLS, SVM, and RF models across all variables (SDM, N, P, and K). These results highlight the effectiveness of specific spectral bands for nutrient and biomass discrimination and emphasize the potential of these techniques for rapid, non-destructive nutrient content estimation. The findings support the integration of advanced spectroscopic methods with machine learning algorithms for improved precision agriculture practices, providing a more sustainable alternative for nutrient and biomass analysis in forage crops. This approach optimizes forage production and minimizes atmospheric CO2 emissions.
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Affiliation(s)
- Marlon Rodrigues
- Department of Agronomy, Federal Institute of Paraná, União da Vitória, Paraná, Brazil; Department of Biological and Environmental Sciences, Federal University of Technology - Paraná, Medianeira, Paraná, Brazil.
| | - Everson Cezar
- Department of Agricultural and Earth Sciences, University of Minas Gerais State, Passos, Minas Gerais, Brazil
| | | | | | | | | | - Marcos Rafael Nanni
- Department of Agronomy, University of Maringá State, Maringá, Paraná, Brazil
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Kutler RB, He L, Green RW, Rameau A. Advancing laryngology through artificial intelligence: a comprehensive review of implementation frameworks and strategies. Curr Opin Otolaryngol Head Neck Surg 2025; 33:131-136. [PMID: 40036167 DOI: 10.1097/moo.0000000000001041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2025]
Abstract
PURPOSE OF REVIEW This review aims to explore the integration of artificial intelligence (AI) in laryngology, with specific focus on the barriers preventing translation from pilot studies into routine clinical practice and strategies for successful implementation. RECENT FINDINGS Laryngology has seen an increasing number of pilot and proof-of-concept studies demonstrating AI's ability to enhance diagnostics, treatment planning, and patient outcomes. Despite these advancements, few tools have been successfully adopted in clinical settings. Effective implementation requires the application of established implementation science frameworks early in the design phase. Additional factors required for the successful integration of AI applications include addressing specific clinical needs, fostering diverse and interdisciplinary teams, and ensuring scalability without compromising model performance. Governance, epistemic, and ethical considerations must also be continuously incorporated throughout the project lifecycle to ensure the safe, responsible, and equitable use of AI technologies. SUMMARY While AI hold significant promise for advancing laryngology, its implementation in clinical practice remains limited. Achieving meaningful integration will require a shift toward practical solutions that prioritize clinicians' and patients' needs, usability, sustainability, and alignment with clinical workflows.
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Affiliation(s)
- Rachel B Kutler
- Sean Parker Institute for the Voice, Department of Otolaryngology-Head and Neck Surgery, Weill Cornell Medical College, New York
| | - Linh He
- Sean Parker Institute for the Voice, Department of Otolaryngology-Head and Neck Surgery, Weill Cornell Medical College, New York
| | - Ross W Green
- Co-Founder, Chief Medical Officer and Chief Revenue Officer, Opollo Technologies, Buffalo, New York, USA
| | - Anaïs Rameau
- Sean Parker Institute for the Voice, Department of Otolaryngology-Head and Neck Surgery, Weill Cornell Medical College, New York
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Fung A, Beyene J, Mediratta RP. Principles of Clinical Prediction Model Development and Validation. Hosp Pediatr 2025; 15:e280-e285. [PMID: 40314596 DOI: 10.1542/hpeds.2024-008218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Accepted: 02/06/2025] [Indexed: 05/03/2025]
Abstract
Clinical prediction models help inform health care professionals, patients, and their families about the risks of disease or a future outcome and guide decision-making aimed at mitigating these risks. In this article, we review the principles of clinical prediction model development and validation, including predictor selection, model performance measures, internal validation, translation of a model to a scoring rule for clinical application, and external validation. We illustrate each principle using a published example of a prediction model developed to predict the presence of invasive bacterial infection in well-appearing febrile infants aged no more than 60 days presenting to emergency departments.
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Affiliation(s)
- Alastair Fung
- Division of Paediatric Medicine, Department of Paediatrics, The Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada
| | - Joseph Beyene
- Department of Health Research Methods, Evidence and Impact, Faculty of Health Sciences, McMaster University, Hamilton, Ontario, Canada
| | - Rishi P Mediratta
- Division of Pediatric Hospital Medicine, Department of Pediatrics, Stanford University School of Medicine, Palo Alto, California
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Sim J, Lee S, Kim S, Jeong SH, Yoon J, Baek S. Diagnosis of carpal tunnel syndrome using deep learning with comparative guidance. Clin Neurophysiol 2025; 174:191-197. [PMID: 40300239 DOI: 10.1016/j.clinph.2025.03.038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2024] [Revised: 02/18/2025] [Accepted: 03/12/2025] [Indexed: 05/01/2025]
Abstract
OBJECTIVE This study aims to develop a deep learning model for a robust diagnosis of Carpal Tunnel Syndrome (CTS) based on comparative classification leveraging the ultrasound images of the thenar and hypothenar muscles. METHODS We recruited 152 participants, both patients with varying severities of CTS and healthy individuals. The enrolled patients underwent ultrasonography, which provided ultrasound image data of the thenar and hypothenar muscles from the median and ulnar nerves. These images were used to train a deep learning model. We compared the performance of our model with previous comparative methods using echo intensity ratio or machine learning, and non-comparative methods based on deep learning. During the training process, comparative guidance based on cosine similarity was used so that the model learns to automatically identify the abnormal differences in echotexture between the ultrasound images of the thenar and hypothenar muscles. RESULTS The proposed deep learning model with comparative guidance showed the highest performance. The comparison of Receiver operating characteristic (ROC) curves between models demonstrated that the Comparative guidance was effective in autonomously identifying complex features within the CTS dataset. CONCLUSIONS The proposed deep learning model with comparative guidance was shown to be effective in automatically identifying important features for CTS diagnosis from the ultrasound images. The proposed comparative approach was found to be robust to the traditional problems in ultrasound image analysis such as different cut-off values and anatomical variation of patients. SIGNIFICANCE Proposed deep learning methodology facilitates accurate and efficient diagnosis of CTS from ultrasound images.
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Affiliation(s)
- Jungsub Sim
- Department of Computer Science, Korea University, Seoul, Republic of Korea
| | - Sungche Lee
- Department of Physical Medicine & Rehabilitation, Korea University, Seoul, Republic of Korea
| | - Seunghyun Kim
- Department of Computer Science, Korea University, Seoul, Republic of Korea
| | - Seong-Ho Jeong
- Department of Physical Medicine & Rehabilitation, Korea University, Seoul, Republic of Korea
| | - Joonshik Yoon
- Department of Physical Medicine & Rehabilitation, Korea University, Seoul, Republic of Korea.
| | - Seungjun Baek
- Department of Computer Science, Korea University, Seoul, Republic of Korea.
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Maphaisa TC, Akinmoladun OF, Adelusi OA, Mwanza M, Fon F, Tangni E, Njobeh PB. Advances in mycotoxin detection techniques and the crucial role of reference material in ensuring food safety. A review. Food Chem Toxicol 2025; 200:115387. [PMID: 40081789 DOI: 10.1016/j.fct.2025.115387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2025] [Revised: 03/09/2025] [Accepted: 03/10/2025] [Indexed: 03/16/2025]
Abstract
Mycotoxins, toxic secondary metabolites produced by fungi, pose a significant threat to food safety and human health. The occurrence of mycotoxins in food commodities necessitates accurate and reliable detection methods. Advanced detection techniques, such as chromatographic techniques and immunochemical assays, have improved sensitivity and specificity. However, the lack of standardized reference material, particularly in less privileged countries, hinders method validation and proficiency testing, ultimately affecting mycotoxin testing and regulation. Moreover, these techniques are complex as they require specialized equipment, and well-trained personnel, thus limiting their practical applications. This comprehensive review provides an up-to-date overview of the occurrence of mycotoxins and recent advancements in detection methods. It examines the crucial role of mycotoxin standards as reference materials for ensuring reliable results in mycotoxins analysis in agriculture commodities. The review addresses emerging challenges, knowledge gaps, and future research directions in mycotoxin detection and reference material development. By synthesizing existing literature, this review aims to provide valuable resources for researchers, policymakers, and other stakeholders in food safety, highlighting the importance of integrated approaches to mitigate mycotoxin contamination and ensuring food safety.
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Affiliation(s)
- Tiisetso Colleen Maphaisa
- Department of Biotechnology and Food Technology, Faculty of Science, University of Johannesburg, P.O Box 17011, Doornfontein Campus, 2028, Gauteng, South Africa.
| | - Oluwakamisi Festus Akinmoladun
- Department of Biotechnology and Food Technology, Faculty of Science, University of Johannesburg, P.O Box 17011, Doornfontein Campus, 2028, Gauteng, South Africa
| | - Oluwasola Abayomi Adelusi
- Department of Biotechnology and Food Technology, Faculty of Science, University of Johannesburg, P.O Box 17011, Doornfontein Campus, 2028, Gauteng, South Africa
| | - Mulanda Mwanza
- Department of Animal Health, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa
| | - Fabian Fon
- Department of Agriculture University of Zululand, Private Bag X3886, KwaDlangezwa, South Africa
| | - Emmanuel Tangni
- Sciensano, Chemical and Physical Health Risks Organic Contaminants and Additives, Toxins Unit, Leuvensesteenweg 17, 3080, Tervuren, Belgium
| | - Patrick Berka Njobeh
- Department of Biotechnology and Food Technology, Faculty of Science, University of Johannesburg, P.O Box 17011, Doornfontein Campus, 2028, Gauteng, South Africa
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van der Linden LR, Vavliakis I, de Groot TM, Jutte PC, Doornberg JN, Lozano-Calderon SA, Groot OQ. Artificial Intelligence in bone Metastases: A systematic review in guideline adherence of 92 studies. J Bone Oncol 2025; 52:100682. [PMID: 40337637 PMCID: PMC12056386 DOI: 10.1016/j.jbo.2025.100682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 02/09/2025] [Accepted: 04/15/2025] [Indexed: 05/09/2025] Open
Abstract
Background The last decade has witnessed a surge in artificial intelligence (AI). With bone metastases becoming more prevalent, there is an increasing call for personalized treatment options, a domain where AI can greatly contribute. However, integrating AI into clinical settings has proven to be difficult. Therefore, we aimed to provide an overview of AI modalities for treating bone metastases and recommend implementation-worthy models based on TRIPOD, CLAIM, and UPM scores. Methods This systematic review included 92 studies on AI models in bone metastases between 2008 and 2024. Using three assessment tools we provided a reliable foundation for recommending AI modalities fit for clinical use (TRIPOD or CLAIM ≥ 70 % and UPM score ≥ 10). Results Most models focused on survival prediction (44/92;48%), followed by imaging studies (37/92;40%). Median TRIPOD completeness was 70% (IQR 64-81%), CLAIM completeness was 57% (IQR 48-67%), and UPM score was 7 (IQR 5-9). In total, 10% (9/92) AI modalities were deemed fit for clinical use. Conclusion Transparent reporting, utilizing the aforementioned three evaluation tools, is essential for effectively integrating AI models into clinical practice, as currently, only 10% of AI models for bone metastases are deemed fit for clinical use. Such transparency ensures that both patients and clinicians can benefit from clinically useful AI models, potentially enhancing AI-driven personalized cancer treatment.
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Affiliation(s)
- Lotte R. van der Linden
- Department of Orthopaedic Surgery, University Medical Center Groningen, Groningen, the Netherlands
- Department of Orthopaedic Surgery, Massachusetts General Hospital, Boston, MA, USA
| | - Ioannis Vavliakis
- Department of Orthopaedic Surgery, University Medical Center Groningen, Groningen, the Netherlands
| | - Tom M. de Groot
- Department of Orthopaedic Surgery, University Medical Center Groningen, Groningen, the Netherlands
- Department of Orthopaedic Surgery, Massachusetts General Hospital, Boston, MA, USA
| | - Paul C. Jutte
- Department of Orthopaedic Surgery, University Medical Center Groningen, Groningen, the Netherlands
| | - Job N. Doornberg
- Department of Orthopaedic Surgery, University Medical Center Groningen, Groningen, the Netherlands
| | | | - Olivier Q. Groot
- Department of Orthopaedic Surgery, Massachusetts General Hospital, Boston, MA, USA
- Department of Orthopaedic Surgery, University Medical Center Utrecht, Utrecht, the Netherlands
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Vyas A, Kumar K, Sharma A, Verma D, Bhatia D, Wahi N, Yadav AK. Advancing the frontier of artificial intelligence on emerging technologies to redefine cancer diagnosis and care. Comput Biol Med 2025; 191:110178. [PMID: 40228444 DOI: 10.1016/j.compbiomed.2025.110178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2025] [Revised: 04/04/2025] [Accepted: 04/07/2025] [Indexed: 04/16/2025]
Abstract
BACKGROUND Artificial Intelligence (AI) is capable of revolutionizing cancer therapy and advancing precision oncology via integrating genomics data and digitized health information. AI applications show promise in cancer prediction, prognosis, and treatment planning, particularly in radiomics, deep learning, and machine learning for early cancer diagnosis. However, widespread adoption requires comprehensive data and clinical validation. While AI has demonstrated advantages in treating common malignancies like lung and breast cancers, challenges remain in managing rare tumors due to limited datasets. AI's role in processing multi-omics data and supporting precision oncology decision-making is critical as genetic and health data become increasingly digitized. METHOD This review article presents current knowledge on AI and associated technologies, which are being utilized in the diagnosis and therapy of cancer. The applications of AI in radiomics, deep learning, and machine learning for cancer screening and treatment planning are examined. The study also explores the capabilities and limitations of predictive AI in diagnosis and prognosis, as well as generative AI, such as advanced chatbots, in patient and provider interactions. RESULTS AI can improve the early diagnosis and treatment of high-incidence cancers like breast and lung cancer. However, its application in rare cancers is limited by insufficient data for training and validation. AI can effectively process large-scale multi-omics data from DNA and RNA sequencing, enhancing precision oncology. Predictive AI aids in risk assessment and prognosis, while generative AI tools improve patient-provider communication. Despite these advancements, further research and technological progress are needed to overcome existing challenges. CONCLUSIONS AI holds transformative potential for cancer therapy, particularly in precision oncology, early detection, and personalized treatment planning. However, challenges such as data limitations in rare cancers, the need for clinical validation, and regulatory considerations must be addressed. Future advancements in AI could significantly improve decision-support systems in oncology, ultimately enhancing patient care and quality of life. The review highlights both the opportunities and obstacles in integrating AI into cancer diagnostics and therapeutics, calling for continued research and regulatory oversight.
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Affiliation(s)
- Akanksha Vyas
- Academy of Scientific and Innovative Research, Ghaziabad, 201002, India
| | - Krishan Kumar
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, 110016, India
| | - Ayushi Sharma
- College of Medicine, Taipei Medical University, Taipei City, 110, Taiwan
| | - Damini Verma
- Centre for Nanotechnology, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, 247667, India
| | - Dhiraj Bhatia
- Department of Biological Sciences & Engineering, Indian Institute of Technology Gandhinagar, Near Palaj, Gandhinagar, Gujarat, 382355, India
| | - Nitin Wahi
- Department of Biotechnology, LNCT University, Kolar Road, Shirdipuram, Bhopal, Madhya Pradesh, 462042, India
| | - Amit K Yadav
- Department of Biological Sciences & Engineering, Indian Institute of Technology Gandhinagar, Near Palaj, Gandhinagar, Gujarat, 382355, India.
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Jiang H, Liu A, Cao Y, Lin Z, Jiang H, Liu S, Peng Q, Wu X, Liu Y, Yu X, Wei M, Pan Y, Li C, Ying Z. Machine learning based differential diagnosis of SAPHO syndrome and secondary bone tumors using whole body bone scintigraphy. Sci Rep 2025; 15:18651. [PMID: 40437231 PMCID: PMC12120089 DOI: 10.1038/s41598-025-99690-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Accepted: 04/22/2025] [Indexed: 06/01/2025] Open
Abstract
SAPHO syndrome is an inflammatory disorder with bone and cutaneous manifestations, for which whole-body bone scintigraphy (WBBS) is frequently used in diagnosis. The WBBS findings of SAPHO syndromes and secondary bone tumors (SBT) have overlapping features, posing diagnostic challenges. In this multicenter study, we aim to identify different bone and joint involvement patterns between the two disease entities through multiple methods to build machine-learning models and explore interpretable variables. The study included 1,193 patients, of which 593 were diagnosed with SAPHO syndrome and 600 with SBT. LASSO regression, logistic regression, and random forest techniques were applied in the training set to identify significant risk factors. Manual management and other methods were evaluated in the validation set to identify the top-performing model and the most interpretable terms. The study developed a model using 15 manually selected terms and multiple machine learning techniques, which demonstrated high diagnostic accuracy in the G1 dataset for (training AUC 0.934, testing AUC 0.929, accuracy = 88.3%, precision = 88.7%, Recall = 88.3%, F1 score = 0.882). The model was compared with logistic regression and random forest models and showed consistent results in the G2 dataset for external validation (AUC 0.957, Youden index = 0.806, sensitivity = 0.820, specificity = 0.986). The pelvis, femur, and ribs (excluding anterior ribs 1st-5th) and thoracic vertebrae 1st-8th were significant predictors of SBT, whereas the sacroiliac joints, sternum, foot, anterior ribs 1st-5th, and clavicle were indicative of SAPHO. This study assesses the effectiveness of WBBS terms in identifying SBT from SAPHO syndrome and utilizes machine learning to help screen features for patients. The final model demonstrates its dependability, providing a valuable tool for accurate and timely diagnosis.
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Affiliation(s)
- Hongyang Jiang
- Center for Rehabilitation Medicine, Department of Radiology, Zhejiang Provincial People's Hospital (Affiliated People's Hospital), Hangzhou Medical College, Hangzhou, Zhejiang, China
| | - Aihui Liu
- Center for General Practice Medicine, Department of Rheumatology and Immunology, Zhejiang Provincial People's Hospital (Affiliated People's Hospital), Hangzhou Medical College, Hangzhou, Zhejiang, China
| | - Yihan Cao
- Department of Radiology, Massachusetts General Hospital, Boston, MA, USA
| | - Zhimin Lin
- Third Affiliated Hospital, Beijing University of Chinese Medicine, Beijing, China
| | - Haixu Jiang
- School of Chinese Materia, Beijing University of Chinese Medicine, Beijing, China
| | - Shengyan Liu
- Peking Union Medical College Hospital, Chinese Academy of Medical Science and Peking Union Medical College, Beijing, China
| | - Qiuwei Peng
- Fangshan Hospital, Beijing University of Chinese Medicine, Beijing, China
| | - Xia Wu
- Department of Medicine, Tufts Medical Center, Boston, MA, USA
| | - Yuchen Liu
- Cancer Hospital Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Xinbo Yu
- School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing, China
| | - Maming Wei
- Peking Union Medical College Hospital, Chinese Academy of Medical Science and Peking Union Medical College, Beijing, China
| | - Yalin Pan
- Center for Rehabilitation Medicine, Department of Radiology, Zhejiang Provincial People's Hospital (Affiliated People's Hospital), Hangzhou Medical College, Hangzhou, Zhejiang, China
| | - Chen Li
- Department of Dermatology, Tianjin Institute of Integrative Dermatology, Tianjin Academy of Traditional Chinese Medicine Affiliated Hospital, Tianjin, China.
| | - Zhenhua Ying
- Center for General Practice Medicine, Department of Rheumatology and Immunology, Zhejiang Provincial People's Hospital (Affiliated People's Hospital), Hangzhou Medical College, Hangzhou, Zhejiang, China.
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13
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Sun Y, Yu Z, Sun Y, Xu Y, Song B. A novel approach for multiclass sentiment analysis on Chinese social media with ERNIE-MCBMA. Sci Rep 2025; 15:18675. [PMID: 40437070 PMCID: PMC12119951 DOI: 10.1038/s41598-025-03875-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Accepted: 05/22/2025] [Indexed: 06/01/2025] Open
Abstract
Weibo, one of the most widely used social media platforms in China, sees a vast number of users expressing their opinions and emotional tendencies. Conducting sentiment analysis on Weibo posts using natural language processing techniques is crucial for market research and public opinion observation, holding significant commercial and societal importance. However, Chinese expression is highly diverse, making sentiment polarity harder to discern. Traditional sentiment classification algorithms often struggle with insufficient semantic feature extraction and coarse-grained in sentiment classification for Chinese texts. To address these challenges, this paper proposes a Chinese sentiment multi-classification method based on ERNIE-MCBMA. The proposed model extracts the parallel local dependency features between words through the multi-channel CNN convolutional layer and then uses the collaborative architecture of bidirectional LSTM and multi-head attention mechanism to realize context-sensitive feature recalibration. Finally, the shallow syntactic features and deep semantic representation were fused through the cross-layer feature fusion layer to realize the complementary enhancement of more fine-grained semantic information. The SMP2020-EWECT public dataset is used to categorize texts into six classes: neutral, happy, angry, sad, fear, and surprise. Various comparative experiments were conducted on the dataset. The experimental results show that the ERNIE-MCBMA achieves an accuracy of 78.26% and an F1-score of 78.45% for the 6-class classification task, outperforming other baseline models.
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Affiliation(s)
- Youyang Sun
- School of Computer Science and Technology, Soochow University, Suzhou, 215006, Jiangsu, China
| | - Ziyi Yu
- School of Medical Information and Engineering, Xuzhou Medical University, Xuzhou, 221004, Jiangsu, China
| | - Yuyu Sun
- School of Humanities, Jinling Institute of Technology, Nanjing, 210038, Jiangsu, China
| | - Yaqing Xu
- School of Geography, Geomatics and Planning, Jiangsu Normal University, Xuzhou, 221116, Jiangsu, China.
| | - Boming Song
- School of Medical Information and Engineering, Xuzhou Medical University, Xuzhou, 221004, Jiangsu, China.
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14
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Moharam MH, Hany O, Hany A, Mahmoud A, Mohamed M, Saeed S. Anomaly detection using machine learning and adopted digital twin concepts in radio environments. Sci Rep 2025; 15:18352. [PMID: 40419673 DOI: 10.1038/s41598-025-02759-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2025] [Accepted: 05/15/2025] [Indexed: 05/28/2025] Open
Abstract
Reliable and secure wireless communication is essential in Industry 4.0. This work presents an anomaly detection framework using Digital Twin (DT) technology to simulate and monitor dynamic radio environments. By modeling network conditions and attack scenarios, the DT enables accurate identification of anomalies, particularly security threats. This study integrates machine learning with anomaly detection frameworks to enhance wireless network security. The proposed approach creates a virtual representation of the wireless environment, enabling accurate identification of anomalies and security threats. To validate the effectiveness of this framework, multiple machine learning algorithms based on traditional classifiers which are compared for their ability to detect anomalies, particularly jamming attacks. XGBoost achieved the highest accuracy (0.99) and perfect detection (1.00) of normal traffic and signal drift, outperforming Random Forest (0.98), Support Vector Machine (0.97), Logistic Regression (0.93), and K Nearest Neighbors (0.81). These results highlight XGBoost as a reliable solution for wireless network security. This work contributes to ongoing research on the integration of DT for comprehensive wireless network monitoring, emphasizing their potential to improve anomaly detection and resilience in next-generation communication systems.
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Affiliation(s)
- Mohamed Hussien Moharam
- Electronics and Communications Engineering Department, Misr University for Science and Technology, Giza, Egypt.
| | - Omar Hany
- Electronics and Communications Engineering Department, Misr University for Science and Technology, Giza, Egypt
| | - Ahmed Hany
- Electronics and Communications Engineering Department, Misr University for Science and Technology, Giza, Egypt
| | - Amenah Mahmoud
- Electronics and Communications Engineering Department, Misr University for Science and Technology, Giza, Egypt
| | - Mariam Mohamed
- Electronics and Communications Engineering Department, Misr University for Science and Technology, Giza, Egypt
| | - Sohila Saeed
- Electronics and Communications Engineering Department, Misr University for Science and Technology, Giza, Egypt
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15
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Nguyen Tien D, Thi Thu Bui H, Hoang Thi Ngoc T, Thi Pham T, Trung Nguyen D, Nguyen Thi Thu H, Thu Hang Vu T, Lan Anh Luong T, Thu Hoang L, Cam Tu H, Körber N, Bauer T, Khanh Ho L. A Data-Driven Approach to Assessing Hepatitis B Mother-to-Child Transmission Risk Prediction Model: Machine Learning Perspective. JMIR Form Res 2025; 9:e69838. [PMID: 40409750 DOI: 10.2196/69838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2024] [Revised: 03/19/2025] [Accepted: 04/30/2025] [Indexed: 05/25/2025] Open
Abstract
BACKGROUND Hepatitis B virus (HBV) can be transmitted from mother to child either through transplacental infection or via blood-to-blood contact during or immediately after delivery. Early and accurate risk assessments are essential for guiding clinical decisions and implementing effective preventive measures. Data mining techniques are powerful tools for identifying key predictors in medical diagnostics. OBJECTIVE This study aims to develop a robust predictive model for mother-to-child transmission (MTCT) of HBV using decision tree algorithms, specifically Iterative Dichotomiser 3 (ID3) and classification and regression trees (CART). The study identifies clinically and paraclinically relevant predictors, particularly hepatitis B e antigen (HBeAg) status and peripheral blood mononuclear cell (PBMC) concentration, for effective risk stratification and prevention. Additionally, we will assess the model's reliability and generalizability through cross-validation with various training-test split ratios, aiming to enhance its applicability in clinical settings and inform improved preventive strategies against HBV MTCT. METHODS This study used decision tree algorithms-ID3 and CART-on a data set of 60 hepatitis B surface antigen (HBsAg)-positive pregnant women. Samples were collected either before or at the time of delivery, enabling the inclusion of patients who were undiagnosed or had limited access to treatment. We analyzed both clinical and paraclinical parameters, with a particular focus on HBeAg status and PBMC concentration. Additional biochemical markers were evaluated for their potential contributory or inhibitory effects on MTCT risk. The predictive models were validated using multiple training-test split ratios to ensure robustness and generalizability. RESULTS Our analysis showed that 20 out of 48 (based on a split ratio of 0.8 from a total of 60 cases, 42%) to 27 out of 57 (based on a split ratio of 0.95 from a total of 60 cases, 47%) training cases with HBeAg-positive status were associated with a significant risk of MTCT of HBV (χ28=21.16, P=.007, df=8). Among HBeAg-negative women, those with PBMC concentrations ≥8 × 106 cells/mL exhibited a low risk of MTCT, whereas individuals with PBMC concentrations <8 × 106 cells/mL demonstrated a negligible risk. Across all training-test split ratios, the decision tree models consistently identified HBeAg status and PBMC concentration as the most influential predictors, underscoring their robustness and critical role in MTCT risk stratification. CONCLUSIONS This study demonstrates that decision tree models are effective tools for stratifying the risk of MTCT of HBV by integrating key clinical and paraclinical markers. Among these, HBeAg status and PBMC concentration emerged as the most critical predictors. While the analysis focused on untreated patients, it provides a strong foundation for future investigations involving treated populations. These findings offer actionable insights to support the development of more targeted and effective HBV MTCT prevention strategies.
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Affiliation(s)
- Dung Nguyen Tien
- Department of Microbiology, Thai Nguyen University of Medicine and Pharmacy, Thái Nguyên, Vietnam
| | - Huong Thi Thu Bui
- Department of Microbiology, Thai Nguyen University of Medicine and Pharmacy, Thái Nguyên, Vietnam
- Department of Immunology - Molecular Genetics, Thai Nguyen National General Hospital, Thái Nguyên, Vietnam
| | - Tram Hoang Thi Ngoc
- Department of Microbiology, Thai Nguyen University of Medicine and Pharmacy, Thái Nguyên, Vietnam
| | - Thuy Thi Pham
- Department of Microbiology, Thai Nguyen University of Medicine and Pharmacy, Thái Nguyên, Vietnam
| | - Dac Trung Nguyen
- Department of Microbiology, Thai Nguyen University of Medicine and Pharmacy, Thái Nguyên, Vietnam
| | - Huyen Nguyen Thi Thu
- Department of Microbiology, Thai Nguyen University of Medicine and Pharmacy, Thái Nguyên, Vietnam
| | - Thi Thu Hang Vu
- Department of Microbiology, Thai Nguyen University of Medicine and Pharmacy, Thái Nguyên, Vietnam
| | - Thi Lan Anh Luong
- Department of MBG, Hanoi Medical University, Hanoi, Vietnam
- Center of Clinical Genetics and Genomics, Hanoi Medical University Hospital, Hanoi, Vietnam
| | - Lan Thu Hoang
- Department of MBG, Hanoi Medical University, Hanoi, Vietnam
- Center of Clinical Genetics and Genomics, Hanoi Medical University Hospital, Hanoi, Vietnam
| | - Ho Cam Tu
- Department of MBG, Hanoi Medical University, Hanoi, Vietnam
- Technical University of Munich, Munich, Germany
| | - Nina Körber
- Institute of Virology (VIRO), Molecular Targets and Therapeutics Center, Helmholtz Zentrum München, Munich, Germany
| | - Tanja Bauer
- Institute of Virology (VIRO), Molecular Targets and Therapeutics Center, Helmholtz Zentrum München, Munich, Germany
| | - Lam Khanh Ho
- Faculty of Information Technology, Hung Yen University of Technology and Education, Hưng Yên, Vietnam
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16
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Gao P, Gao X, Lin L, Zhang M, Luo D, Chen C, Li Y, He Y, Liu X, Shi C, Yang R. Identification of PRKCQ-AS1 as a Keratinocyte-Derived Exosomal lncRNA That Promotes Th17 Differentiation and IL-17 secretion in Psoriasis Through Bioinformatics, Machine Learning Algorithms, and Cell Experiments. J Inflamm Res 2025; 18:6557-6582. [PMID: 40433053 PMCID: PMC12107390 DOI: 10.2147/jir.s521553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2025] [Accepted: 05/13/2025] [Indexed: 05/29/2025] Open
Abstract
Background Psoriasis is an immune-mediated skin disease where Th17 cell differentiation and IL-17 secretion play critical roles. This study investigates key exosomal ncRNAs regulating the Th17/IL-17 axis in psoriasis and their mechanisms. Methods We integrated bulk RNA sequencing datasets from the GEO database to construct and evaluate exosome-related patterns. Subsequently, exosome-related ncRNAs in psoriasis lesions were identified primarily through weighted gene co-expression network analysis and five machine learning algorithms. Additionally, large-scale integrated single-cell RNA sequencing data and genome-wide association study (GWAS) data were included to investigate the mechanisms of key ncRNA, primarily through immune infiltration analysis, gene set enrichment analysis (GSEA), co-expression analysis, and Mendelian randomization. Finally, the mechanisms of key ncRNA were confirmed primarily through cell co-culture and lentiviral transfection, assessed by immunofluorescence, qRT-PCR, and Western blot. Results We identified 10 exosome-related ncRNAs, including PRKCQ-AS1, and constructed five machine learning models with excellent diagnostic performance, emphasizing PRKCQ-AS1's significance. Mendelian randomization demonstrated a causal relationship between PRKCQ-AS1 and psoriasis. Immune infiltration analysis and GSEA indicated that PRKCQ-AS1 influences the infiltration pattern of CD4+T cells, promotes Th17 differentiation, and is related to STAT3. The expression distribution in single-cell RNA sequencing data suggested that exosomal PRKCQ-AS1 may originate from keratinocytes, and co-expression analysis supported its role in STAT3 activation within lymphocytes. Co-culture experiments confirmed that keratinocytes in psoriasis models, as well as keratinocytes overexpressing PRKCQ-AS1, can upregulate PRKCQ-AS1 levels in CD4+T cells via exosomes, promoting Th17 cell differentiation and IL-17 secretion. Consistent results and STAT3 signaling pathway activation were detected in CD4+T cells overexpressing PRKCQ-AS1. Conclusion PRKCQ-AS1 is an exosomal lncRNA from keratinocytes in psoriasis, promoting Th17 differentiation and IL-17 secretion through STAT3 activation. This finding deepens the understanding of psoriasis pathogenesis and provides a basis for targeted therapies.
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Affiliation(s)
- Pengfei Gao
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
- Biomedical Big Data Center, Nanfang College, Guangzhou, People’s Republic of China
| | - Xiaolu Gao
- The First Clinical Medical College, Guangzhou University of Chinese Medicine, Guangzhou, People’s Republic of China
| | - Long Lin
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
| | - Ming Zhang
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
- Biomedical Big Data Center, Nanfang College, Guangzhou, People’s Republic of China
| | - Dongqiang Luo
- The Second Clinical Medical College, Guangzhou University of Chinese Medicine, Guangzhou, People’s Republic of China
| | - Chuyan Chen
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
| | - Yujie Li
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
| | - Yufeng He
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
| | - Xianmiao Liu
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
| | - Chunyu Shi
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
| | - Ruisi Yang
- School of Yunkang Medicine and Health, Nanfang College, Guangzhou, People’s Republic of China
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17
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Salih M, Austin C, Mantravadi K, Seow E, Jitanantawittaya S, Reddy S, Vollenhoven B, Rezatofighi H, Horta F. Deep learning classification integrating embryo images with associated clinical information from ART cycles. Sci Rep 2025; 15:17585. [PMID: 40399312 PMCID: PMC12095659 DOI: 10.1038/s41598-025-02076-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 05/12/2025] [Indexed: 05/23/2025] Open
Abstract
An advanced Artificial Intelligence (AI) model that leverages cutting-edge computer vision techniques to analyse embryo images and clinical data, enabling accurate prediction of clinical pregnancy outcomes in single embryo transfer procedures. Three AI models were developed, trained, and tested using a database comprised of a total of 1503 international treatment cycles (Thailand, Malaysia, and India): 1) A Clinical Multi-Layer Perceptron (MLP) for patient clinical data. 2) An Image Convolutional Neural Network (CNN) AI model using blastocyst images. 3) A fused model using a combination of both models. All three models were evaluated against their ability to predict clinical pregnancy and live birth. Each of the models were further assessed through a visualisation process where the importance of each data point clarified which clinical and embryonic features contributed the most to the prediction. The MLP model achieved a strong performance of 81.76% accuracy, 90% average precision and 0.91 AUC (Area Under the Curve). The CNN model achieved a performance of 66.89% accuracy, 74% average precision and 0.73 AUC. The Fusion model achieved 82.42% accuracy, 91% average precision and 0.91 AUC. From the visualisation process we found that female and male age to be the most clinical factors, whilst Trophectoderm to be the most important blastocyst feature. There is a gap in performance between the Clinical and Images model, which is expected due to the difficulty in predicting clinical pregnancy from just the blastocyst images. However, the Fusion AI model made more informed predictions, achieving better performance than separate models alone. This study demonstrates that AI for IVF application can increase prediction performance by integrating blastocyst images with patient clinical information.
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Affiliation(s)
- Mohamed Salih
- Department of Obstetrics and Gynaecology, Monash University, 246 Clayton Road, Clayton, VIC, 3168, Australia
| | - Christopher Austin
- Dept of Data Science and Artificial Intelligence, Faculty of Information Technology, Monash University, Clayton, VIC , Australia
| | | | - Eva Seow
- IVF Bridge Fertility Center, Johor, Malaysia
| | | | - Sandeep Reddy
- School of Medicine, Deakin University, Geelong, VIC, Australia
| | - Beverley Vollenhoven
- Department of Obstetrics and Gynaecology, Monash University, 246 Clayton Road, Clayton, VIC, 3168, Australia
- Women's and Newborn Program, Monash Health, Melbourne, VIC, Australia
| | - Hamid Rezatofighi
- Dept of Data Science and Artificial Intelligence, Faculty of Information Technology, Monash University, Clayton, VIC , Australia
| | - Fabrizzio Horta
- Department of Obstetrics and Gynaecology, Monash University, 246 Clayton Road, Clayton, VIC, 3168, Australia.
- Monash Data Future Institute, Monash University, Clayton, VIC, Australia.
- Discipline of Women's Health, Fertility & Research Centre, Royal Hospital for Women & School of Clinical Medicine, University of New South Wales, Randwick, NSW, Australia.
- City Fertility, Sydney, NSW, Australia.
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18
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Alter IL, Dias C, Briano J, Rameau A. Digital health technologies in swallowing care from screening to rehabilitation: A narrative review. Auris Nasus Larynx 2025; 52:319-326. [PMID: 40403345 DOI: 10.1016/j.anl.2025.05.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2025] [Revised: 05/14/2025] [Accepted: 05/16/2025] [Indexed: 05/24/2025]
Abstract
OBJECTIVES Digital health technologies (DHTs) have rapidly advanced in the past two decades, through developments in mobile and wearable devices and most recently with the explosion of artificial intelligence (AI) capabilities and subsequent extension into the health space. DHT has myriad potential applications to deglutology, many of which have undergone promising investigations and developments in recent years. We present the first literature review on applications of DHT in swallowing health, from screening to therapeutics. Public health interventions for swallowing care are increasingly needed in the setting of aging populations in the West and East Asia, and DHT may offer a scalable and low-cost solution. METHODS A narrative review was performed using PubMed and Google Scholar to identify recent research on applications of AI and digital health in swallow practice. Database searches, conducted in September 2024, included terms such as "digital," "AI," "machine learning," "tools" in combination with "deglutition," "Otolaryngology," "Head and Neck," "speech language pathology," "swallow," and "dysphagia." Primary literature pertaining to digital health in deglutology was included for review. RESULTS We review the various applications of DHT in swallowing care, including prevention, screening, diagnosis, treatment planning and rehabilitation. CONCLUSION DHT may offer innovative and scalable solutions for swallowing care as public health needs grow and in the setting of limited specialized healthcare workforce. These technological advances are also being explored as time and resource saving solutions at many points of care in swallow practice. DHT could bring affordable and accurate information for self-management of dysphagia to broader patient populations that otherwise lack access to expert providers.
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Affiliation(s)
- Isaac L Alter
- Department of Otolaryngology-Head and Neck Surgery, Sean Parker Institute for the Voice, Weill Cornell Medical College, 240 E 59 St, NY, NY 10022, USA
| | - Carla Dias
- Department of Otolaryngology-Head and Neck Surgery, Sean Parker Institute for the Voice, Weill Cornell Medical College, 240 E 59 St, NY, NY 10022, USA
| | - Jack Briano
- Department of Otolaryngology-Head and Neck Surgery, Sean Parker Institute for the Voice, Weill Cornell Medical College, 240 E 59 St, NY, NY 10022, USA
| | - Anaïs Rameau
- Department of Otolaryngology-Head and Neck Surgery, Sean Parker Institute for the Voice, Weill Cornell Medical College, 240 E 59 St, NY, NY 10022, USA.
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19
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Zhou W, Xie Z. Enhancing Sealing Performance Predictions: A Comprehensive Study of XGBoost and Polynomial Regression Models with Advanced Optimization Techniques. MATERIALS (BASEL, SWITZERLAND) 2025; 18:2392. [PMID: 40429129 PMCID: PMC12113006 DOI: 10.3390/ma18102392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2025] [Revised: 05/08/2025] [Accepted: 05/16/2025] [Indexed: 05/29/2025]
Abstract
Motors, as the core carriers of pollution-free power, realize efficient electric energy conversion in clean energy systems such as electric vehicles and wind power generation, and are widely used in industrial automation, smart home appliances, and rail transit fields with their low-noise and zero-emission operating characteristics, significantly reducing the dependence on fossil energy. As the requirements of various application scenarios become increasingly complex, it becomes particularly important to accurately and quickly design the sealing structure of motors. However, traditional design methods show many limitations when facing such challenges. To solve this problem, this paper proposes hybrid models of machine learning that contain polynomial regression and optimization XGBOOST models to rapidly and accurately predict the sealing performance of motors. Then, the hybrid model is combined with the simulated annealing algorithm and multi-objective particle swarm optimization algorithm for optimization. The reliability of the results is verified by the mutual verification of the results of the simulated annealing algorithm and the particle swarm optimization algorithm. The prediction accuracy of the hybrid model for data outside the training set is within 2.881%. Regarding the prediction speed of this model, the computing time of ML is less than 1 s, while the computing time of FEA is approximately 9 h, with an efficiency improvement of 32,400 times. Through the cross-validation of single-objective optimization and multi-objective optimization algorithms, the optimal design scheme is a groove depth of 0.8-0.85 mm and a pre-tightening force of 80 N. The new method proposed in this paper solves the limitations in the design of motor sealing structures, and this method can be extended to other fields for application.
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Affiliation(s)
| | - Zonghong Xie
- School of Aeronautics and Astronautics, Sun Yat-sen University, Shenzhen 518107, China;
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20
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Venkata Krishna Reddy M, Raghavendar Raju L, Sai Prasad K, Kumari DDA, Veerabhadram V, Yamsani N. Enhanced effective convolutional attention network with squeeze-and-excitation inception module for multi-label clinical document classification. Sci Rep 2025; 15:16988. [PMID: 40379823 PMCID: PMC12084642 DOI: 10.1038/s41598-025-98719-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2024] [Accepted: 04/14/2025] [Indexed: 05/19/2025] Open
Abstract
Clinical Document Classification (CDC) is crucial in healthcare for organizing and categorizing large volumes of medical information, leading to improved patient care, streamlined research, and enhanced administrative efficiency. With the advancement of artificial intelligence, automatic CDC is now achievable through deep learning techniques. While existing research has shown promising results, more effective and accurate classification of long clinical documents is still desired. To address this, we propose a new model called the Enhanced Effective Convolutional Attention Network (EECAN), which incorporates a Squeeze-and-Excitation (SE) Inception module to improve feature representation by adaptively recalibrating channel-wise feature responses. This architecture introduces an Encoder and Attention-Based Clinical Document Classification (EAB-CDC) strategy, which utilizes sum-pooling and multi-layer attention mechanisms to extract salient features from clinical document representations. This study proposes EECAN (Enhanced Effective Convolutional Attention Network) as the overall model architecture and EAB-CDC (Encoder and Attention-Based Clinical Document Classification) as a core strategy conducted in EECAN. EAB-CDC is not a standalone model but a functional part applied to the architecture for discriminative feature extraction by sum-pooling and multi-layer attention mechanisms. With this integrated design, EECAN can transform multi-label clinical texts' general and label-specific contexts without losing information. Our empirical study, conducted on benchmark datasets such as MIMIC-III and MIMIC-III-50, demonstrates that the proposed EECAN model outperforms several existing deep learning approaches, achieving AUC scores of 99.70% and 99.80% using sum-pooling and multi-layer attention, respectively. These results highlight the model's substantial potential for integration into clinical systems, such as Electronic Health Record (EHR) platforms, for the automated classification of clinical texts and improved healthcare decision-making support.
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Affiliation(s)
- M Venkata Krishna Reddy
- Department of Computer Science and Engineering, Chaitanya Bharathi Institute of Technology (Autonomous), Gandipet, Hyderabad, India.
| | - L Raghavendar Raju
- Department of Computer Science and Engineering, Matrusri Engineering College, Hyderabad, India
| | - Kashi Sai Prasad
- Department of CSE-AI&ML, , MLR Institute of Technology, Hyderabad, India
| | - Dr D Anitha Kumari
- Professor, Department of CSM, TKR College of Engineering and Technology, Hyderabad, India
| | | | - Nagendar Yamsani
- School of Computer Science and Artificial Intelligence, SR University, Warangal, India
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Prakash K, Harshitha MN, Lakshmi GN, Moses P, Chowdary MS, Bansal S, Faruque MRI, Al-Mugren KS. MyWear revolutionizes real-time health monitoring with comparative analysis of machine learning. Sci Rep 2025; 15:17026. [PMID: 40379805 PMCID: PMC12084638 DOI: 10.1038/s41598-025-01860-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Accepted: 05/08/2025] [Indexed: 05/19/2025] Open
Abstract
This paper facilitates proactive health management, advanced patient care, and early identification of possible health hazards by using MyWear. It is a wearable T-shirt that continuously monitors and predicts physiological parameters such as stress and heart rate fluctuations. In particular, it is especially helpful for managing cardiovascular disease, tracking stress, improving athletic performance, and providing health care. The device was tested with several machine learning models, such as K-Nearest Neighbour (KNN), Support Vector Machine (SVM), Naïve Bayes, Logistic Regression, Decision Tree, and Stochastic Gradient Descent (SGD) to identify irregular heart rhythms. Using the SVM model, the system detects problems with an average accuracy of 98%. In the future, MyWear-designed as a wearable T-shirt-will seamlessly integrate with mobile applications for real-time data visualization, enhancing patient outcomes and fostering greater user engagement.
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Affiliation(s)
- Krishna Prakash
- Department of Electronics and Communication Engineering, NRI Institute of Technology, Agiripalli, Eluru, Andhra Pradesh, 521212, India.
| | - Musam Naga Harshitha
- Department of CSE (AIML), NRI Institute of Technology, Agiripalli, Eluru, Andhra Pradesh, 521212, India
| | - Golla Naga Lakshmi
- Department of CSE (AIML), NRI Institute of Technology, Agiripalli, Eluru, Andhra Pradesh, 521212, India
| | - Pallem Moses
- Department of CSE (AIML), NRI Institute of Technology, Agiripalli, Eluru, Andhra Pradesh, 521212, India
| | - Madala Sumanth Chowdary
- Department of CSE (AIML), NRI Institute of Technology, Agiripalli, Eluru, Andhra Pradesh, 521212, India
| | - Shonak Bansal
- Department of Electronics and Communication Engineering, Chandigarh University, Gharuan, Punjab, India.
| | - Mohammad Rashed Iqbal Faruque
- Space Science Centre (ANGKASA), Institute of Climate Change (IPI), Universiti Kebangsaan Malaysia, UKM, 43600, Bangi, Selangor D. E., Malaysia.
| | - K S Al-Mugren
- Physics Department, Science College, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
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22
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Omar M, Agbareia R, Glicksberg BS, Nadkarni GN, Klang E. Benchmarking the Confidence of Large Language Models in Answering Clinical Questions: Cross-Sectional Evaluation Study. JMIR Med Inform 2025; 13:e66917. [PMID: 40378406 PMCID: PMC12101789 DOI: 10.2196/66917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 01/31/2025] [Accepted: 01/31/2025] [Indexed: 05/18/2025] Open
Abstract
Background The capabilities of large language models (LLMs) to self-assess their own confidence in answering questions within the biomedical realm remain underexplored. Objective This study evaluates the confidence levels of 12 LLMs across 5 medical specialties to assess LLMs' ability to accurately judge their own responses. Methods We used 1965 multiple-choice questions that assessed clinical knowledge in the following areas: internal medicine, obstetrics and gynecology, psychiatry, pediatrics, and general surgery. Models were prompted to provide answers and to also provide their confidence for the correct answers (score: range 0%-100%). We calculated the correlation between each model's mean confidence score for correct answers and the overall accuracy of each model across all questions. The confidence scores for correct and incorrect answers were also analyzed to determine the mean difference in confidence, using 2-sample, 2-tailed t tests. Results The correlation between the mean confidence scores for correct answers and model accuracy was inverse and statistically significant (r=-0.40; P=.001), indicating that worse-performing models exhibited paradoxically higher confidence. For instance, a top-performing model-GPT-4o-had a mean accuracy of 74% (SD 9.4%), with a mean confidence of 63% (SD 8.3%), whereas a low-performing model-Qwen2-7B-showed a mean accuracy of 46% (SD 10.5%) but a mean confidence of 76% (SD 11.7%). The mean difference in confidence between correct and incorrect responses was low for all models, ranging from 0.6% to 5.4%, with GPT-4o having the highest mean difference (5.4%, SD 2.3%; P=.003). Conclusions Better-performing LLMs show more aligned overall confidence levels. However, even the most accurate models still show minimal variation in confidence between right and wrong answers. This may limit their safe use in clinical settings. Addressing overconfidence could involve refining calibration methods, performing domain-specific fine-tuning, and involving human oversight when decisions carry high risks. Further research is needed to improve these strategies before broader clinical adoption of LLMs.
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Affiliation(s)
- Mahmud Omar
- Division of Data-Driven and Digital Medicine (D3M), Department of Medicine, Icahn School of Medicine at Mount Sinai, Gustave L. Levy Place New York, New York, NY, 10029, United States, 1 212 241 6500
| | - Reem Agbareia
- Ophthalmology Department, Hadassah Medical Center, Jerusalem, Israel
| | - Benjamin S Glicksberg
- Division of Data-Driven and Digital Medicine (D3M), Department of Medicine, Icahn School of Medicine at Mount Sinai, Gustave L. Levy Place New York, New York, NY, 10029, United States, 1 212 241 6500
| | - Girish N Nadkarni
- Division of Data-Driven and Digital Medicine (D3M), Department of Medicine, Icahn School of Medicine at Mount Sinai, Gustave L. Levy Place New York, New York, NY, 10029, United States, 1 212 241 6500
| | - Eyal Klang
- Division of Data-Driven and Digital Medicine (D3M), Department of Medicine, Icahn School of Medicine at Mount Sinai, Gustave L. Levy Place New York, New York, NY, 10029, United States, 1 212 241 6500
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Gholamzadeh M, Safdari R, Asadi Gharabaghi M, Abtahi H. Analysis of the most influential factors affecting outcomes of lung transplant recipients: a multivariate prediction model based on UNOS Data. BMJ Open 2025; 15:e089796. [PMID: 40379311 PMCID: PMC12086922 DOI: 10.1136/bmjopen-2024-089796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/09/2024] [Accepted: 04/11/2025] [Indexed: 05/19/2025] Open
Abstract
OBJECTIVES In lung transplantation (LTx), a priority is assigned to each candidate on the waiting list. Our primary objective was to identify the key factors that influence the allocation of priorities in LTx using machine learning (ML) techniques to enhance the process of prioritising patients. DESIGN Developing a prediction model. SETTING AND PARTICIPANTS Our data were retrieved from the United Network for Organ Sharing (UNOS) open-source database of transplant patients between 2005 and 2023. INTERVENTIONS After the preprocessing process, a feature engineering technique was employed to select the most relevant features. Then, six ML models with optimised hyperparameters including multiple linear regression, random forest regressor (RF), support vector machine regressor, XGBoost regressor, a multilayer perceptron model and a deep learning model were developed based on the UNOS dataset. PRIMARY AND SECONDARY OUTCOME MEASURES The performance of each model was evaluated using R-squared (R2) and other error rate metrics. Next, the Shapley Additive Explanations (SHAP) technique was used to identify the most important features in the prediction. RESULTS The raw dataset contains 196 270 records with 545 features in all organs. After preprocessing, 32 966 records with 15 features remain. Among various models, the RF model achieved a high R2 score. Additionally, the RF model exhibited the lowest error values, indicating its superior precision compared with other regression models. The SHAP technique in conjunction with the RF model revealed the 11 most important features for priority allocation. Subsequently, we developed a web-based decision support tool using Python and the Streamlit framework based on the best-fine-tuned model. CONCLUSION The deployment of the ML model has the potential to act as an automated tool to aid physicians in assessing the priority of lung transplants and identifying significant factors that play a role in patient survival.
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Affiliation(s)
- Marsa Gholamzadeh
- Health Information Management and Medical Informatics Department, School of Allied Medical Sciences, Tehran University of Medical Sciences, Tehran, Iran (the Islamic Republic of)
| | - Reza Safdari
- Health Information Management and Medical Informatics Department, School of Allied Medical Sciences, Tehran University of Medical Sciences, Tehran, Iran (the Islamic Republic of)
| | - Mehrnaz Asadi Gharabaghi
- Department of Pulmonary Medicine, Faculty of Medicine, Tehran University of Medical Sciences, Tehran, Iran (the Islamic Republic of)
| | - Hamidreza Abtahi
- Pulmonary and Critical Care Medicine Department, Thoracic Research Center, Imam Khomeini Hospital Complex, Tehran University of Medical Sciences, Tehran, Iran (the Islamic Republic of)
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Zhou W, Xie Z. Explainable Machine Learning with Two-Layer Multi-Objective Optimization Algorithm Applied to Sealing Structure Design. MATERIALS (BASEL, SWITZERLAND) 2025; 18:2307. [PMID: 40429043 PMCID: PMC12113595 DOI: 10.3390/ma18102307] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2025] [Revised: 05/12/2025] [Accepted: 05/13/2025] [Indexed: 05/29/2025]
Abstract
This study addresses the challenge of optimizing seal structure design through a novel two-stage interpretable optimization framework. Focusing on O-ring waterproof performance under hyperelastic material behavior, this study proposes a double-layer optimization method integrating explainable machine learning with hierarchical clustering algorithms. The key innovation lies in employing modified hierarchical clustering to categorize design parameters into two interpretable groups: bolt preload and groove depth. This clustering enables dimensionality reduction while maintaining the physical interpretability of critical parameters. In the first layer, systematic parameter screening and optimization are applied to the preload variable to reduce the database, with six remaining data points that constitute one-seventh of the original data. The second layer subsequently refines configurations using E-TOPSIS (Entropy Weight-Technique for Order Preference by Similarity to Ideal Solution) optimization. All evaluations are performed through FEA (finite element analysis) considering nonlinear material responses. The optimal design is a groove depth of 0.8 mm and a preload of 80 N. The experimental validation demonstrates that this method efficiently identifies optimal designs meeting IPX8 waterproof requirements, with zero leakage observed in both O-ring surfaces and motor interiors. The proposed methodology provides physically meaningful design guidelines.
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Affiliation(s)
| | - Zonghong Xie
- School of Aeronautics and Astronautics, Sun Yat-sen University, Shenzhen 518107, China;
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Haider T, Akram W, Joshi R, Vishwakarma M, Saraf S, Soni V, Garud N. Unlocking the secrets: Structure-function dynamics of plant proteins. Colloids Surf B Biointerfaces 2025; 254:114791. [PMID: 40383024 DOI: 10.1016/j.colsurfb.2025.114791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Revised: 04/20/2025] [Accepted: 05/10/2025] [Indexed: 05/20/2025]
Abstract
Plant-based proteins are becoming essential resources for sustainable food systems, pharmaceutical innovations, and functional materials. This review examines the complex structure-function relationships of plant proteins, emphasising their crucial role in defining functional properties and applications. The primary structure, consisting of amino acid sequences, along with secondary, tertiary, and quaternary structures, profoundly affects protein behaviour. External factors such as pH, ionic strength, temperature, and processing techniques like extrusion and enzymatic modification can influence protein structure, consequently modifying their functional properties. Consider rewording to "Advanced processing techniques, such as high-pressure and non-thermal methods, effectively refine protein structures while preserving their functionality.Computational modelling, employing molecular dynamics and artificial intelligence, is proposed as a revolutionary instrument for forecasting and enhancing structure-function relationships. An emerging application of plant proteins is targeted drug delivery, whose structural characteristics facilitate accurate encapsulation and release of therapeutic agents. Case studies highlight the importance of protein surface characteristics in attaining precise cellular or tissue targeting, especially for conditions related to cancer and inflammation. This review concludes by highlighting strategic avenues for harnessing the complete potential of plant proteins, placing them at the cutting edge of innovation in food science, biotechnology, and drug delivery.
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Affiliation(s)
- Tanweer Haider
- Gyan Vihar School of Pharmacy, Suresh Gyan Vihar University, Jagatpura, Jaipur, Rajasthan 302017, India
| | - Wasim Akram
- Amity Institute of Pharmacy, Amity University Madhya Pradesh, Gwalior, Madhya Pradesh 474005, India.
| | - Ramakant Joshi
- Amity Institute of Pharmacy, Amity University Madhya Pradesh, Gwalior, Madhya Pradesh 474005, India
| | - Monika Vishwakarma
- Amity Institute of Pharmacy, Amity University Madhya Pradesh, Gwalior, Madhya Pradesh 474005, India; Department of Pharmaceutical Sciences, Doctor Harisingh Gour Vishwavidyalaya, Sagar 470003, India
| | - Shivani Saraf
- Babulal Tarabai Institute of Pharmaceutical Science, Sagar, Madhya Pradesh, 470228 India
| | - Vandana Soni
- Department of Pharmaceutical Sciences, Doctor Harisingh Gour Vishwavidyalaya, Sagar 470003, India
| | - Navneet Garud
- School of studies in Pharmaceutical Sciences, Jiwaji University, Gwalior, Madhya Pradesh 474001, India
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Onah E, Eze UJ, Abdulraheem AS, Ezigbo UG, Amorha KC, Ntie-Kang F. Optimizing unsupervised feature engineering and classification pipelines for differentiated thyroid cancer recurrence prediction. BMC Med Inform Decis Mak 2025; 25:182. [PMID: 40361143 PMCID: PMC12070754 DOI: 10.1186/s12911-025-03018-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2025] [Accepted: 05/02/2025] [Indexed: 05/15/2025] Open
Abstract
BACKGROUND Differentiated thyroid cancer (DTC) is a common endocrine malignancy with rising incidence and frequent recurrence, despite a generally favorable prognosis. Accurate recurrence prediction is critical for guiding post-treatment strategies. This study aimed to enhance predictive performance by refining feature engineering and evaluating a diverse ensemble of machine learning models using the UCI DTC dataset. METHODS Unsupervised data engineering-specifically dimensionality reduction and clustering-was used to improve feature quality. Principal Component Analysis (PCA) and Truncated Singular Value Decomposition (t-SVD) were selected based on superior clustering metrics: adjusted Rand Index (ARI > 0.55) and V-measure (> 0.45). These were integrated into classification pipelines using Logistic Regression (LR), Support Vector Machine (SVM), Random Forest (RF), K-Nearest Neighbors (KNN), Feedforward Neural Network (FNN), and Gradient Boosting (GB). Model performance was evaluated through bootstrapping on an independent test set, stratified 10-fold cross-validation (CV), and subgroup analyses. Metrics included balanced accuracy, F1 score, AUC, sensitivity, specificity, and precision, each reported with 95% confidence intervals (CIs). SHAP analysis supported model interpretability. RESULTS The PCA-based LR pipeline achieved the best test set performance: balanced accuracy of 0.95 (95% CI: 0.90-0.99), AUC of 0.99 (95% CI: 0.97-1.00), and sensitivity of 0.94 (95% CI: 0.84-1.00). In stratified CV, it maintained strong results (balanced accuracy: 0.86; AUC: 0.97; sensitivity: 0.80), with consistent performance across clinically relevant subgroups. The t-SVD-based LR pipeline showed comparable performance on both test and CV sets. SVM and FNN pipelines also performed robustly (test AUCs > 0.99; CV AUCs > 0.96). RF and KNN had high specificity but slightly lower sensitivity (test: ~0.87; CV: 0.77-0.80). GB pipelines showed the lowest overall performance (test balanced accuracy: 0.86-0.88; CV: 0.85-0.88). CONCLUSIONS Dimensionality reduction via PCA and t-SVD significantly improved model performance, particularly for LR, SVM, FNN, RF and KNN classifiers. The PCA-based LR pipeline showed the best generalizability, supporting its potential integration into clinical decision-support tools for personalized DTC management. CLINICAL TRIAL NUMBER Not applicable.
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Affiliation(s)
- Emmanuel Onah
- Department of Pharmaceutical and Medicinal Chemistry, Faculty of Pharmaceutical Sciences, University of Nigeria, Nsukka, Enugu State, 410001, Nigeria.
| | - Uche Jude Eze
- College of Pharmacy, Ohio State University, Ohio, 43210, USA.
| | | | | | - Kosisochi Chinwendu Amorha
- Department of Clinical Pharmacy and Pharmacy Management, Faculty of Pharmaceutical Sciences, University of Nigeria, Nsukka, Enugu State, 410001, Nigeria
| | - Fidele Ntie-Kang
- Center for Drug Discovery (UB-CeDD), Faculty of Science, University of Buea, Buea, Cameroon.
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Eusufzai SZ, Jamayet NB, Ahmed S, Islam MB, Ahmad WMAW, Alam MK. Development and evaluation of an early childhood caries prediction model: a deep learning-based hybrid statistical modelling approach. Eur Arch Paediatr Dent 2025:10.1007/s40368-025-01046-1. [PMID: 40354021 DOI: 10.1007/s40368-025-01046-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Accepted: 04/02/2025] [Indexed: 05/14/2025]
Abstract
PURPOSE An effective Deep learning (DL) based Early Childhood Caries (ECC) prediction model is crucial for early detection of ECC. This study aims to develop and evaluate a deep learning (DL) based hybrid statistical model for ECC prediction. METHODS The study employed a computational cross-sectional design, conducted over a three-year period from March 2021 to March 2024. Data analysis was carried out using a hybrid statistical approach that integrated bootstrap methods, Logistic Regression Modelling (LRM), and Multilayer Feed-Forward Neural Networks (MLFFNN). The sample comprised 157 parent-child pairs, providing a robust dataset for examining the research questions. RESULTS In the current study, the predictors named, "mother's education" (β1: 0.423; p < 0.25), "parent's knowledge of bottle-feeding habit during sleep can cause tooth decay" (β2: -1.264; p < 0.25), "attitude towards the importance of oral health as general health" (β4: -1.052; p < 0.25) and "parent's self-reported oral pain among their children" (β5: -2.107; p < 0.25) showed significant association with ECC. For this model, the Mean Absolute Deviation (MAD) was 0.02211, Predictive Mean Squared Error (PMSE) was 0.07909, and the accuracy level was 99.98%. No significant difference was observed from the t-test between the actual values and the predicted values of the model (p > 0.05). CONCLUSION It has been shown that this unique deep learning-based ECC prediction model appears an effective tool with high accuracy and interpretability for ECC prediction. After implementing the oral health intervention program, focusing on the potential predictors of ECC obtained from this innovative model, policymakers could be able to evaluate their prediction models comparing their results with the findings of the current study. This comparison will guide them in understanding, designing, and implementing a more effective intervention program for ECC prevention.
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Affiliation(s)
- S Z Eusufzai
- Department of Biostatistics, Universiti Sains Malaysia, Kota Bharu, Malaysia
| | - N B Jamayet
- School of Dentistry, IMU University, Kuala Lumpur, Malaysia
| | - S Ahmed
- Department of Electrical and Computer Engineering, North South University, Dhaka, Bangladesh
| | - M B Islam
- Department of Computing and Software Engineering, Florida Gulf Coast University, Florida, USA
| | - W M A W Ahmad
- Department of Biostatistics, Universiti Sains Malaysia, Kota Bharu, Malaysia.
| | - M K Alam
- College of Dentistry, Jouf University, Sakaka, Saudi Arabia
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28
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Mariotti F, Agostini A, Borgheresi A, Marchegiani M, Zannotti A, Giacomelli G, Pierpaoli L, Tola E, Galiffa E, Giovagnoni A. Insights into radiomics: a comprehensive review for beginners. Clin Transl Oncol 2025:10.1007/s12094-025-03939-5. [PMID: 40355777 DOI: 10.1007/s12094-025-03939-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2025] [Accepted: 04/16/2025] [Indexed: 05/15/2025]
Abstract
Radiomics and artificial intelligence (AI) are rapidly evolving, significantly transforming the field of medical imaging. Despite their growing adoption, these technologies remain challenging to approach due to their technical complexity. This review serves as a practical guide for early-career radiologists and researchers seeking to integrate radiomics into their studies. It provides practical insights for clinical and research applications, addressing common challenges, limitations, and future directions in the field. This work offers a structured overview of the essential steps in the radiomics workflow, focusing on concrete aspects of each step, including indicative and practical examples. It covers the main steps such as dataset definition, image acquisition and preprocessing, segmentation, feature extraction and selection, and AI model training and validation. Different methods to be considered are discussed, accompanied by summary diagrams. This review equips readers with the knowledge necessary to approach radiomics and AI in medical imaging from a hands-on research perspective.
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Affiliation(s)
- Francesco Mariotti
- Department of Clinical, Special and Dental Sciences, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
| | - Andrea Agostini
- Department of Clinical, Special and Dental Sciences, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
- Department of Radiological Sciences - Division of Clinical Radiology, University Hospital "Azienda Ospedaliero Universitaria delle Marche", Via Conca, 71, 60126, Ancona, Italy
| | - Alessandra Borgheresi
- Department of Clinical, Special and Dental Sciences, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy.
- Department of Radiological Sciences - Division of Clinical Radiology, University Hospital "Azienda Ospedaliero Universitaria delle Marche", Via Conca, 71, 60126, Ancona, Italy.
| | - Marzia Marchegiani
- School of Radiology, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
| | - Alice Zannotti
- School of Radiology, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
| | - Gloria Giacomelli
- School of Radiology, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
| | - Luca Pierpaoli
- School of Radiology, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
| | - Elisabetta Tola
- School of Radiology, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
| | - Elena Galiffa
- School of Radiology, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
| | - Andrea Giovagnoni
- Department of Clinical, Special and Dental Sciences, University Politecnica delle Marche, Via Tronto, 10/A, 60126, Ancona, Italy
- Department of Radiological Sciences - Division of Clinical Radiology, University Hospital "Azienda Ospedaliero Universitaria delle Marche", Via Conca, 71, 60126, Ancona, Italy
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Liang Y, Li D, Deng D, Chu CH, Mei ML, Li Y, Yu N, He J, Cheng L. AI-Driven Dental Caries Management Strategies: From Clinical Practice to Professional Education and Public Self Care. Int Dent J 2025; 75:100827. [PMID: 40354695 DOI: 10.1016/j.identj.2025.04.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2025] [Revised: 04/13/2025] [Accepted: 04/14/2025] [Indexed: 05/14/2025] Open
Abstract
Dental caries is one of the most prevalent chronic diseases among both children and adults, despite being largely preventable. This condition has significant negative impacts on human health and imposes a substantial economic burden. In recent years, scientists and dentists have increasingly started to utilize artificial intelligence (AI), particularly machine learning, to improve the efficiency of dental caries management. This study aims to provide an overview of the current knowledge about the AI-enabled approaches for dental caries management within the framework of personalized patient care. Generally, AI works as a promising tool that can be used by both dental professionals and patients. For dental professionals, it predicts the risk of dental caries by analyzing dental caries risk and protective factors, enabling to formulate personalized preventive measures. AI, especially those based on machine learning and deep learning, can also analyze images to detect signs of dental caries, assist in developing treatment plans, and help to make a risk assessment for pulp exposure during treatment. AI-powered tools can also be used to train dental students through simulations and virtual case studies, allowing them to practice and refine their clinical skills in a risk-free environment. Additionally, AI tracks brushing patterns and provides feedback to improve oral hygiene practices of the patients and the general population, thereby improving their understanding and compliance. This capability of AI can inform future research and the development of new strategies for dental caries management and control.
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Affiliation(s)
- Yutong Liang
- State Key Laboratory of Oral Diseases & National Center for Stomatology & National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, Sichuan, China; Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu, China
| | - Dongling Li
- State Key Laboratory of Oral Diseases & National Center for Stomatology & National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, Sichuan, China; Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu, China
| | - Dongmei Deng
- Department of Preventive Dentistry, Academic Center for Dentistry Amsterdam (ACTA), University of Amsterdam and Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Chun Hung Chu
- Faculty of Dentistry, University of Hong Kong, Hong Kong, China
| | - May Lei Mei
- Sir John Walsh Research Institute, Faculty of Dentistry, University of Otago, Dunedin, New Zealand
| | - Yunpeng Li
- Centre for Oral, Clinical and Translational Sciences, Faculty of Dental, Oral and Craniofacial Sciences, King's College London, London, United Kingdom
| | - Na Yu
- National Dental Centre Singapore, Singapore
| | - Jinzhi He
- State Key Laboratory of Oral Diseases & National Center for Stomatology & National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, Sichuan, China; Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu, China.
| | - Lei Cheng
- State Key Laboratory of Oral Diseases & National Center for Stomatology & National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, Sichuan, China; Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu, China.
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30
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Galal A, Moustafa A, Salama M. Transforming neurodegenerative disorder care with machine learning: Strategies and applications. Neuroscience 2025; 573:272-285. [PMID: 40120712 DOI: 10.1016/j.neuroscience.2025.03.036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Revised: 03/05/2025] [Accepted: 03/17/2025] [Indexed: 03/25/2025]
Abstract
Neurodegenerative diseases (NDs), characterized by progressive neuronal degeneration and manifesting in diverse forms such as memory loss and movement disorders, pose significant challenges due to their complex molecular mechanisms and heterogeneous patient presentations. Diagnosis often relies heavily on clinical assessments and neuroimaging, with definitive confirmation frequently requiring post-mortem autopsy. However, the emergence of Artificial Intelligence (AI) and Machine Learning (ML) offers a transformative potential. These technologies can enable the development of non-invasive tools for early diagnosis, biomarker identification, personalized treatment strategies, patient subtyping and stratification, and disease risk prediction. This review aims to provide a starting point for researchers, both with and without clinical backgrounds, who are interested in applying ML to NDs. We will discuss available data resources for key diseases like Alzheimer's and Parkinson's, explore how ML can revolutionize neurodegenerative care, and emphasize the importance of integrating multiple high-dimensional data sources to gain deeper insights and inform effective therapeutic strategies.
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Affiliation(s)
- Aya Galal
- Systems Genomics Laboratory, American University in Cairo, New Cairo, Egypt; Institute of Global Health and Human Ecology, American University in Cairo, New Cairo, Egypt
| | - Ahmed Moustafa
- Systems Genomics Laboratory, American University in Cairo, New Cairo, Egypt; Institute of Global Health and Human Ecology, American University in Cairo, New Cairo, Egypt; Biology Department, American University in Cairo, New Cairo, Egypt
| | - Mohamed Salama
- Institute of Global Health and Human Ecology, American University in Cairo, New Cairo, Egypt; Global Brain Health Institute (GBHI), Trinity College Dublin, Dublin 2, Ireland; Faculty of Medicine, Mansoura University, El Mansura, Egypt.
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Chambuso R, Musarurwa TN, Aldera AP, Deffur A, Geffen H, Perkins D, Ramesar R. Genomics and integrative clinical data machine learning scoring model to ascertain likely Lynch syndrome patients. BJC REPORTS 2025; 3:30. [PMID: 40325286 PMCID: PMC12053672 DOI: 10.1038/s44276-025-00140-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Revised: 03/12/2025] [Accepted: 03/31/2025] [Indexed: 05/07/2025]
Abstract
BACKGROUND Lynch syndrome (LS) screening methods include multistep molecular somatic tumor testing to distinguish likely-LS patients from sporadic cases, which can be costly and complex. Also, direct germline testing for LS for every diagnosed solid cancer patient is a challenge in resource limited settings. We developed a unique machine learning scoring model to ascertain likely-LS cases from a cohort of colorectal cancer (CRC) patients. METHODS We used CRC patients from the cBioPortal database (TCGA studies) with complete clinicopathologic and somatic genomics data. We determined the rate of pathogenic/likely pathogenic variants in five (5) LS genes (MLH1, MSH2, MSH6, PMS2, EPCAM), and the BRAF mutations using a pre-designed bioinformatic annotation pipeline. Annovar, Intervar, Variant Effect Predictor (VEP), and OncoKB software tools were used to functionally annotate and interpret somatic variants detected. The OncoKB precision oncology knowledge base was used to provide information on the effects of the identified variants. We scored the clinicopathologic and somatic genomics data automatically using a machine learning model to discriminate between likely-LS and sporadic CRC cases. The training and testing datasets comprised of 80% and 20% of the total CRC patients, respectively. Group regularisation methods in combination with 10-fold cross-validation were performed for feature selection on the training data. RESULTS Out of 4800 CRC patients frorm the TCGA datasets with clinicopathological and somatic genomics data, we ascertained 524 patients with complete data. The scoring model using both clinicopathological and genetic characteristics for likely-LS showed a sensitivity and specificity of 100%, and both had the maximum accuracy, area under the curve (AUC) and AUC for precision-recall (AUCPR) of 1. In a similar analysis, the training and testing models that only relied on clinical or pathological characteristics had a sensitivity of 0.88 and 0.50, specificity of 0.55 and 0.51, accuracy of 0.58 and 0.51, AUC of 0.74 and 0.61, and AUCPR of 0.21 and 0.19, respectively. CONCLUSIONS Simultaneous scoring of LS clinicopathological and somatic genomics data can improve prediction and ascertainment for likely-LS from all CRC cases. This approach can increase accuracy while reducing the reliance on expensive direct germline testing for all CRC patients, making LS screening more accessible and cost-effective, especially in resource-limited settings.
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Affiliation(s)
- Ramadhani Chambuso
- Department of Global Health and Population, Harvard T. Chan School of Public Health, Boston, MA, USA.
- UCT/MRC Genomics and Precision Medicine Research Unit, Division of Human Genetics, Department of Pathology, University of Cape Town, Cape Town, South Africa.
| | - Takudzwa Nyasha Musarurwa
- UCT/MRC Genomics and Precision Medicine Research Unit, Division of Human Genetics, Department of Pathology, University of Cape Town, Cape Town, South Africa
| | - Alessandro Pietro Aldera
- UCT/MRC Genomics and Precision Medicine Research Unit, Division of Human Genetics, Department of Pathology, University of Cape Town, Cape Town, South Africa
| | - Armin Deffur
- UCT/MRC Genomics and Precision Medicine Research Unit, Division of Human Genetics, Department of Pathology, University of Cape Town, Cape Town, South Africa
- IndigenAfrica, Inc., Cape Town, South Africa
| | - Hayli Geffen
- Department of Public Health and Bioinformatics, University of Cape Town, Cape Town, South Africa
| | - Douglas Perkins
- Department of Global Health, School of Medicine, University of New Mexico, Albuquerque, NM, USA
| | - Raj Ramesar
- UCT/MRC Genomics and Precision Medicine Research Unit, Division of Human Genetics, Department of Pathology, University of Cape Town, Cape Town, South Africa
- Institute of Infectious Disease and Molecular Medicine, University of Cape Town and Affiliated Hospitals, Cape Town, South Africa
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Ramachandra TV, Negi P, Mondal T, Ahmed SA. Insights into the linkages of forest structure dynamics with ecosystem services. Sci Rep 2025; 15:15606. [PMID: 40320407 PMCID: PMC12050335 DOI: 10.1038/s41598-025-00167-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Accepted: 04/25/2025] [Indexed: 05/08/2025] Open
Abstract
Large-scale land cover changes leading to land degradation and deforestation in fragile ecosystems such as the Western Ghats have impaired ecosystem services, evident from the conversion of perennial water bodies to seasonal, which necessitates an understanding of forest structure dynamics with ecosystem services to evolve appropriate location-specific mitigation measures to arrest land degradation. The current study evaluates the extent and condition of forest ecosystems in Goa of the Central Western Ghats, a biodiversity hotspot. Land use dynamics is assessed through a supervised hierarchical classifier based on the Random Forest Machine Learning Algorithm, revealing that total forest cover declined by 3.75% during the post-1990s due to market forces associated with globalization. Likely land uses predicated through the CA-Markov-based Analytic Hierarchy Process (AHP) highlight a decline in evergreen forest cover of 10.98%. The carbon sequestration potential of forests in Goa assessed through the InVEST model highlights the storage of 56,131.16 Gg of carbon, which accounts for 373.47 billion INR (4.49 billion USD). The total ecosystem supply value (TESV) for forest ecosystems was computed by aggregating the provisioning, regulating, and cultural services, which accounts for 481.76 billion INR per year. TESV helps in accounting for the degradation cost of ecosystems towards the development of green GDP (Gross Domestic Product). Prioritization of Ecologically Sensitive Regions (ESR) considering bio-geo-climatic, ecological, and social characteristics at disaggregated levels reveals that 54.41% of the region is highly sensitive (ESR1 and ESR2). The outcome of the research offers invaluable insights for the formulation of strategic natural resource management approaches.
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Affiliation(s)
- T V Ramachandra
- Energy & Wetlands Research Group and IISc-EIACP, Centre for Ecological Sciences [CES], Indian Institute of Science, Bangalore, India.
- Centre for Sustainable Technologies [astra], Indian Institute of Science, Bangalore, 560012, India.
- Centre for Infrastructure, Sustainable Transportation and Urban Planning [CiSTUP], Indian Institute of Science, Bengaluru, 560 012, Karnataka, India.
| | - Paras Negi
- Energy & Wetlands Research Group and IISc-EIACP, Centre for Ecological Sciences [CES], Indian Institute of Science, Bangalore, India
- Department of Applied Geology, Kuvempu University, Shimoga, 577471, India
| | - Tulika Mondal
- Energy & Wetlands Research Group and IISc-EIACP, Centre for Ecological Sciences [CES], Indian Institute of Science, Bangalore, India
- Department of Applied Geology, Kuvempu University, Shimoga, 577471, India
| | - Syed Ashfaq Ahmed
- Department of Applied Geology, Kuvempu University, Shimoga, 577471, India
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Nematimoez M, Bangerter C, Von Arx M, Liechti M, Schmid S. Gender and body height discriminate spinal movement patterns during lifting and lowering tasks. ERGONOMICS 2025:1-13. [PMID: 40314453 DOI: 10.1080/00140139.2025.2496950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 04/11/2025] [Indexed: 05/03/2025]
Abstract
This study aimed to explore the relationships between gender, anthropometrics, and spinal movement patterns (SMP) during lifting and lowering tasks. Thirty adults lifted and lowered a 15 kg-box using a freestyle, squat, and stoop technique. A stepwise segmentation approach, along with the timing of main inflection points of relative angles, was used to distinguish various spinal movement patterns. Temporal multi-segmental interactions were categorised, and their frequencies were analysed based on segments and lifting techniques. SMP's demonstrated varying associations with gender and anthropometric factors during lifting and lowering phases. Notably, during stoop lifting, females tended towards a bottom-up pattern, contrasting with males' preference for a simultaneous pattern. Cluster analysis highlighted the bottom-up pattern in the thoracic spine as the most prominent discriminating factor among females. This SMP categorisation method holds potential for designing tailored manual material handling strategies and re-evaluating therapeutic and exercise programs in occupational, clinical, and sport contexts.
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Affiliation(s)
- Mehdi Nematimoez
- Department of Sport Biomechanics, University of Bojnord, Bojnord, Iran
| | - Christian Bangerter
- Spinal Movement Biomechanics Group, School of Health Professions, Bern University of Applied Sciences, Bern, Switzerland
| | - Michael Von Arx
- Spinal Movement Biomechanics Group, School of Health Professions, Bern University of Applied Sciences, Bern, Switzerland
| | - Melanie Liechti
- Spinal Movement Biomechanics Group, School of Health Professions, Bern University of Applied Sciences, Bern, Switzerland
| | - Stefan Schmid
- Spinal Movement Biomechanics Group, School of Health Professions, Bern University of Applied Sciences, Bern, Switzerland
- Faculty of Medicine, University of Basel, Basel, Switzerland
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Mohammed A, Alshraideh H, Abu-Helalah M, Shamayleh A. An explainable non-invasive hybrid machine learning framework for accurate prediction of thyroid-stimulating hormone levels. Comput Biol Med 2025; 189:109974. [PMID: 40058078 DOI: 10.1016/j.compbiomed.2025.109974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2024] [Revised: 02/12/2025] [Accepted: 03/02/2025] [Indexed: 04/01/2025]
Abstract
Machine learning models, including thyroid biomarkers, are increasingly utilized in healthcare for biomarker prediction. These models offer the potential to enhance disease diagnosis through data-driven approaches relying on non-invasive techniques. However, no studies have explored the application of fully non-invasive methods for predicting thyroid-stimulating hormone (TSH) levels. Consequently, this study introduces a novel, fully non-invasive framework for predicting TSH levels by developing an innovative hybrid machine learning model that balances performance, complexity, and interpretability. Seven ML models were evaluated, and the best-performing models were integrated into a hybrid approach to balance performance, complexity, and interpretability. A dataset of 6190 instances from Jordan was used for model development. Four-dimensional non-invasive factors, including demographics, symptoms, family history, and newly engineered symptom scores, were incorporated into the model. The hybrid model achieved an R2 of 94.2 % and RMSE of 0.015, demonstrating superior predictive performance. Model interpretability was ensured using LIME and SHAP explainers, confirming aggregated symptom scores' critical role in enhancing prediction accuracy. A robust feature selection technique was implemented, reducing model complexity and enhancing performance. Among the top ten features for predicting TSH levels were hypothyroidism and hyperthyroidism symptom scores, family history, cold intolerance, itchy-dry skin, sweating, hand tremors, and palpitations. The model can be employed to develop cost-effective diagnostic tools for thyroid disorders. It also offers a robust framework that can be generalized to predict other biomarkers and applied in diverse contexts.
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Affiliation(s)
- Areej Mohammed
- Department of Industrial Engineering, Engineering Systems Management Program, American University of Sharjah, Sharjah, P.O. Box 26666, United Arab Emirates.
| | - Hussam Alshraideh
- Department of Industrial Engineering, American University of Sharjah, Sharjah, P.O. Box 26666, United Arab Emirates; Industrial Engineering Department, Jordan University of Science and Technology, Irbid, Jordan.
| | - Munir Abu-Helalah
- Department of Family and Community Medicine, School of Medicine, University of Jordan, Public Health Institute, Amman, Jordan.
| | - Abdulrahim Shamayleh
- Department of Industrial Engineering, American University of Sharjah, Sharjah, P.O. Box 26666, United Arab Emirates.
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Girard CI, Romanchuk NJ, Del Bel MJ, Carsen S, Chan ADC, Benoit DL. Classifiers of anterior cruciate ligament status in female and male adolescents using return-to-activity criteria. Knee Surg Sports Traumatol Arthrosc 2025; 33:1633-1644. [PMID: 39344772 PMCID: PMC12022818 DOI: 10.1002/ksa.12462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 08/21/2024] [Accepted: 08/28/2024] [Indexed: 10/01/2024]
Abstract
PURPOSE A lack of standardization exists for functional tasks in return-to-activity (RTA) guidelines for adolescents with anterior cruciate ligament injury (ACLi). Identifying the variables that discern ACLi status among adolescents is a first step in the creation of such guidelines following surgical reconstruction. This study investigated the use of classification models to discern ACLi status of adolescents with and without injury using spatiotemporal variables from functional tasks typically used in RTA guidelines for adults. METHODS Sixty-four adolescents with ACLi and 70 uninjured adolescents completed single-limb hops, lunges, squats, countermovement jumps and drop-vertical jumps. Jumping distances, heights, and depths were collected. Decision trees (DTs) were used to classify ACLi status and were evaluated using the F-measure (F1), kappa statistic (ĸ) and area under the precision-recall curve (PRC). Independent t tests and effect sizes were calculated for each important classifier of the DT models. RESULTS A five-variable model classified ACLi status with an accuracy of 67.5% (F1 = 0.6842; ĸ = 0.350; PRC = 0.491) with sex as a classifier. Significant differences were found in three of the four spatiotemporal variables (p ≤ 0.002). Separate models then classified ACLi status in males and females with an accuracy of 53.3% (F1 = 0.5882; ĸ = 0.0541; PRC = 0.476) and 76.9% (F1 = 0.7692; ĸ = 0.541; PRC = 0.528), respectively, with significant differences for all variables (p ≤ 0.013). CONCLUSIONS Among the DT models, females were better able to classify ACLi status compared to males, highlighting the importance of sex-specific rehabilitation guidelines for adolescents. LEVEL OF EVIDENCE Level III.
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Affiliation(s)
- Céline I. Girard
- Department of Mechanical EngineeringUniversity of OttawaOttawaOntarioCanada
- Ottawa‐Carleton Institute of Biomedical EngineeringOttawaOntarioCanada
| | - Nicholas J. Romanchuk
- Department of Mechanical EngineeringUniversity of OttawaOttawaOntarioCanada
- Ottawa‐Carleton Institute of Biomedical EngineeringOttawaOntarioCanada
| | - Michael J. Del Bel
- School of Rehabilitation SciencesUniversity of OttawaOttawaOntarioCanada
| | - Sasha Carsen
- Division of Orthopaedic SurgeryCHEOOttawaOntarioCanada
- Department of SurgeryUniversity of OttawaOttawaOntarioCanada
| | - Adrian D. C. Chan
- Ottawa‐Carleton Institute of Biomedical EngineeringOttawaOntarioCanada
- Department of Systems and Computer EngineeringCarleton UniversityOttawaOntarioCanada
- School of Human KineticsUniversity of OttawaOttawaOntarioCanada
| | - Daniel L. Benoit
- Department of Health SciencesFaculty of MedicineLund UniversityLundSweden
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Knecht S, Morandini P, Biehler-Gomez L, Nogueira L, Adalian P, Cattaneo C. Sex estimation from patellar measurements in a contemporary Italian population: a machine learning approach. Int J Legal Med 2025; 139:1371-1380. [PMID: 39495285 DOI: 10.1007/s00414-024-03359-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Accepted: 10/23/2024] [Indexed: 11/05/2024]
Abstract
Biological sex estimation in forensic anthropology is a crucial topic, and the patella has shown promise in this regard due to its sexual dimorphism. This study uses 12 machine learning models for sex estimation based on three patellar measurements (maximum height, breadth, and thickness). Data was collected from 180 skeletons of a contemporary Italian population (83 males and 97 females) as well as from an independent sample of 21 forensic cases (13 males and 8 females). Statistical analyses indicated that each of the variables exhibited significant sexual dimorphism. To predict biological sex, the classifiers were built using 70% of a reference sample, then tested on the remaining 30% of the original sample and then tested again on the independent sample. The different classifiers generated accuracies varied between 0.85 and 0.91 on the reference sample and between 0.71 and 0.95 for the validation sample. SVM classifier stood out with the highest accuracy and seemed the best model for our study.This study contributes to the growing application of machine learning in forensic anthropology by being the first to apply such techniques to patellar measurements in an Italian population. It aims to enhance the accuracy and efficiency of biological sex estimation from the patella, building on promising results observed with other skeletal elements.
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Affiliation(s)
- Siam Knecht
- Aix Marseille Université, CNRS, EFS, ADES, Marseille, 13007, France
| | - Paolo Morandini
- LABANOF (Laboratorio di Antropologia e Odontologia Forense), Department of Biomedical Science for Health, University of Milan, Via Mangiagalli 37, Milan, 20133, Italy
| | - Lucie Biehler-Gomez
- LABANOF (Laboratorio di Antropologia e Odontologia Forense), Department of Biomedical Science for Health, University of Milan, Via Mangiagalli 37, Milan, 20133, Italy.
| | - Luisa Nogueira
- Faculté de Médecine, Institut Universitaire d'Anthropologie Médico-Légale, Université Côte d'Azur, 28 Avenue de Valombrose, Cedex 2 Nice, 06107, France
| | - Pascal Adalian
- Aix Marseille Université, CNRS, EFS, ADES, Marseille, 13007, France
| | - Cristina Cattaneo
- LABANOF (Laboratorio di Antropologia e Odontologia Forense), Department of Biomedical Science for Health, University of Milan, Via Mangiagalli 37, Milan, 20133, Italy
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Vijayakumar S, Nair SN, S AC, N A, Gutjahr G, Sidharthan N, Sathyapalan DT, Moni M, Pathinarupothi RK. AI Enhanced explainable early prediction of blood culture positivity in neutropenic patients using clinical and hematologic parameters. Comput Biol Med 2025; 189:109979. [PMID: 40090187 DOI: 10.1016/j.compbiomed.2025.109979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Revised: 03/01/2025] [Accepted: 03/03/2025] [Indexed: 03/18/2025]
Abstract
Leukemia patients who receive chemotherapy experience a decline in neutrophils and an increased risk of infections. Neutropenic sepsis is a life-threatening condition and a major cause of cancer-related mortality. Patients with neutropenic sepsis are generally treated with Broad Spectrum Antibiotics (BSA) as a first-line medication that destroys common causative organisms but may either miss the true pathogen or be overly broad leading to an increased risk of development of Antimicrobial Resistance (AMR). Physicians resort to using BSA due to a typical delay of 2-5 days for specific organism identification by blood cultures. We report the development and validation of an explainable AI powered system to predict bacterial growth in blood cultures (N=110) using readily available hematological parameters, enabling predictions 2-5 days ahead of actual culture results. Our best performing models yielded an accuracy and F1 score of 78%. In predicting gram-negative bacteria (GNB), the models demonstrated an accuracy and F1 score of 63%. To our knowledge, this is the first study to explore AI-powered early prediction of bacteremia in neutropenic sepsis patients in a South Asian population.
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Affiliation(s)
- Sreedhar Vijayakumar
- Center for Wireless Networks & Applications (WNA), Amrita Vishwa Vidyapeetham, Amritapuri, Kerala, India.
| | - Sashi Niranjan Nair
- Division of Infectious Disease, University of Minnesota Medical School, Minneapolis, MN, USA
| | - Aryalakshmi C S
- Division of Infectious Diseases, Amrita Institute of Medical Sciences, Kochi, Kerala, India
| | - Anandakrishnan N
- Department of Mathematics, Amrita Vishwa Vidyapeetham, Amritapuri, Kerala, India
| | - Georg Gutjahr
- AmritaCREATE, Amrita Vishwa Vidyapeetham, Amritapuri, Kerala, India
| | - Neeraj Sidharthan
- Department of Hematology, Amrita Institute of Medical Sciences, Kochi, Kerala, India
| | - Dipu T Sathyapalan
- Division of Infectious Diseases, Amrita Institute of Medical Sciences, Kochi, Kerala, India
| | - Merlin Moni
- Division of Infectious Diseases, Amrita Institute of Medical Sciences, Kochi, Kerala, India
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Alawadhi A, Jenkins D, Palin V, van Staa T. Development and evaluation of prediction models to improve the hospital appointments overbooking strategy at a large tertiary care hospital in the Sultanate of Oman: a retrospective analysis. BMJ Open 2025; 15:e093562. [PMID: 40306993 PMCID: PMC12049869 DOI: 10.1136/bmjopen-2024-093562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Accepted: 04/17/2025] [Indexed: 05/02/2025] Open
Abstract
OBJECTIVE Missed hospital appointments are common among outpatients and have significant clinical and economic consequences. The purpose of this study is to develop a predictive model of missed hospital appointments and to evaluate different overbooking strategies. STUDY DESIGN Retrospective cross-sectional analysis. SETTING Outpatient clinics of the Royal Hospital in Muscat, Oman. PARTICIPANTS All outpatient clinic appointments scheduled between January 2014 and February 2021 (n=947 364). PRIMARY AND SECONDARY OUTCOME MEASURES Predictive models were created using logistic regression for the entire cohort and individual practices to predict missed hospital appointments. The performance of the models was evaluated using a holdout set. Simulations were performed to compare the effectiveness of predictive model-based overbooking and organisational overbooking in optimising appointment utilisation. RESULTS Of the 947 364 outpatient appointments booked, 201 877 (21.3%) were missed. The proportion of missed appointments varied by clinic, ranging from 13.8% in oncology to 28.3% in urology. The area under the receiver operating characteristic curve (AUC) for the overall predictive model was 0.771 (95% CI: 0.768 to 0.775), while the AUC for the clinic-specific predictive model was 0.845 (95% CI: 0.836 to 0.855) for oncology and 0.738 (95% CI: 0.732 to 0.744) for paediatrics. The overbooking strategy based on the predictive model outperformed systematic overbooking, with shortages of available appointments at 10.4% in oncology and 25.0% in gastroenterology. CONCLUSIONS Predictive models can effectively estimate the probability of missing a hospital appointment with high accuracy. Using these models to guide overbooking strategies can enable better appointment scheduling without burdening clinics and reduce the impact of missed appointments.
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Affiliation(s)
- Ahmed Alawadhi
- Division of Informatics, Imaging & Data Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester, UK
- Health Information Management Program, Oman College of Health Sciences, Muscat, Oman
| | - David Jenkins
- Division of Informatics, Imaging & Data Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester, UK
| | - Victoria Palin
- Division of Informatics, Imaging & Data Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester, UK
- Division of Developmental Biology & Medicine, Faculty of Biology Medicine and Health, The University of Manchester, Manchester, UK
| | - Tjeerd van Staa
- Division of Informatics, Imaging & Data Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester, UK
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Srivastava R. Advancing precision oncology with AI-powered genomic analysis. Front Pharmacol 2025; 16:1591696. [PMID: 40371349 PMCID: PMC12075946 DOI: 10.3389/fphar.2025.1591696] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2025] [Accepted: 04/21/2025] [Indexed: 05/16/2025] Open
Abstract
Multiomics data integration approaches offer a comprehensive functional understanding of biological systems, with significant applications in disease therapeutics. However, the quantitative integration of multiomics data presents a complex challenge, requiring highly specialized computational methods. By providing deep insights into disease-associated molecular mechanisms, multiomics facilitates precision medicine by accounting for individual omics profiles, enabling early disease detection and prevention, aiding biomarker discovery for diagnosis, prognosis, and treatment monitoring, and identifying molecular targets for innovative drug development or the repurposing of existing therapies. AI-driven bioinformatics plays a crucial role in multiomics by computing scores to prioritize available drugs, assisting clinicians in selecting optimal treatments. This review will explain the potential of AI and multiomics data integration for disease understanding and therapeutics. It highlight the challenges in quantitative integration of diverse omics data and clinical workflows involving AI in cancer genomics, addressing the ethical and privacy concerns related to AI-driven applications in oncology. The scope of this text is broad yet focused, providing readers with a comprehensive overview of how AI-powered bioinformatics and integrative multiomics approaches are transforming precision oncology. Understanding bioinformatics in Genomics, it explore the integrative multiomics strategies for drug selection, genome profiling and tumor clonality analysis with clinical application of drug prioritization tools, addressing the technical, ethical, and practical hurdles in deploying AI-driven genomics tools.
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Puniya BL. Artificial-intelligence-driven Innovations in Mechanistic Computational Modeling and Digital Twins for Biomedical Applications. J Mol Biol 2025:169181. [PMID: 40316010 DOI: 10.1016/j.jmb.2025.169181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Revised: 04/09/2025] [Accepted: 04/27/2025] [Indexed: 05/04/2025]
Abstract
Understanding of complex biological systems remains a significant challenge due to their high dimensionality, nonlinearity, and context-specific behavior. Artificial intelligence (AI) and mechanistic modeling are becoming essential tools for studying such complex systems. Mechanistic modeling can facilitate the construction of simulatable models that are interpretable but often struggle with scalability and parameters estimation. AI can integrate multi-omics data to create predictive models, but it lacks interpretability. The gap between these two modeling methods limits our ability to develop comprehensive and predictive models for biomedical applications. This article reviews the most recent advancements in the integration of AI and mechanistic modeling to fill this gap. Recently, with omics availability, AI has led to new discoveries in mechanistic computational modeling. The mechanistic models can also help in getting insight into the mechanism for prediction made by AI models. This integration is helpful in modeling complex systems, estimating the parameters that are hard to capture in experiments, and creating surrogate models to reduce computational costs because of expensive mechanistic model simulations. This article focuses on advancements in mechanistic computational models and AI models and their integration for scientific discoveries in biology, pharmacology, drug discovery and diseases. The mechanistic models with AI integration can facilitate biological discoveries to advance our understanding of disease mechanisms, drug development, and personalized medicine. The article also highlights the role of AI and mechanistic model integration in the development of more advanced models in the biomedical domain, such as medical digital twins and virtual patients for pharmacological discoveries.
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Affiliation(s)
- Bhanwar Lal Puniya
- Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE 68588, United States.
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Greif M, Frömel T, Knepper TP, Huhn C, Wagner S, Pütz M. Rapid Assessment of Samples from Large-Scale Clandestine Synthetic Drug Laboratories by Soft Ionization by Chemical Reaction in Transfer-High-Resolution Mass Spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2025. [PMID: 40305118 DOI: 10.1021/jasms.5c00006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2025]
Abstract
The worldwide ongoing trend of synthetic drug production is also of increasing concern due to enormous amounts of chemical waste produced in clandestine laboratories. Typically, several tons of different types of production waste are stored in numerous containers and need to be characterized after dismantling a laboratory to assess production features, e.g., synthesis route and production scale, and to draw conclusions on the minimum number of batches produced. This forensic assessment is commonly done by a rather laborious gas chromatography - mass spectrometry approach. The aim of this work is to evaluate the suitability of the SICRIT (soft ionization by chemical reaction in transfer) ion source, which is based on the dielectric barrier discharge ionization principle, combined with high-resolution mass spectrometry (HRMS), for the rapid classification of liquid samples from amphetamine production in a seized large-scale clandestine drug laboratory. Among the different sample introduction methods tested, headspace analysis directly into the SICRIT ion source in conjunction with a heated inlet proved to be optimal. Identification of expected target substances (reaction educts, intermediates, byproducts, products) was possible as well as grouping related samples and assigning them to specific synthesis steps by multivariate data analysis in an unsupervised approach. In addition, supervised machine learning algorithms were evaluated to obtain a classification model for the assessment of production waste samples from one dismantled synthetic drug laboratory, and a random forest classifier showed the best performance with an accuracy of 97%. The potential of the novel SICRIT-HRMS approach for the assessment of synthetic drug laboratories was demonstrated.
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Affiliation(s)
- Maximilian Greif
- Hochschule Fresenius, Institute for Analytical Research, 65510 Idstein, Germany
- Federal Criminal Police Office, Forensic Science Institute, 65203 Wiesbaden, Germany
| | - Tobias Frömel
- Hochschule Fresenius, Institute for Analytical Research, 65510 Idstein, Germany
| | - Thomas P Knepper
- Hochschule Fresenius, Institute for Analytical Research, 65510 Idstein, Germany
| | - Carolin Huhn
- Eberhard Karls Universität Tübingen, Department of Chemistry, Institute of Physical and Theoretical Chemistry, 72076 Tübingen, Germany
| | - Stephan Wagner
- Hochschule Fresenius, Institute for Analytical Research, 65510 Idstein, Germany
| | - Michael Pütz
- Federal Criminal Police Office, Forensic Science Institute, 65203 Wiesbaden, Germany
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Garg A, Ramamurthi N, Das SS. Addressing Imbalanced Classification Problems in Drug Discovery and Development Using Random Forest, Support Vector Machine, AutoGluon-Tabular, and H2O AutoML. J Chem Inf Model 2025; 65:3976-3989. [PMID: 40230275 DOI: 10.1021/acs.jcim.5c00023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2025]
Abstract
The classification models built on class imbalanced data sets tend to prioritize the accuracy of the majority class, and thus, the minority class generally has a higher misclassification rate. Different techniques are available to address the class imbalance in classification models and can be categorized as data-level, algorithm-level, and hybrid methods. But to the best of our knowledge, an in-depth analysis of the performance of these techniques against the class ratio is not available in the literature. We have addressed these shortcomings in this study and have performed a detailed analysis of the performance of four different techniques to address imbalanced class distribution using machine learning (ML) methods and AutoML tools. To carry out our study, we have selected four such techniques─(a) threshold optimization using (i) GHOST and (ii) the area under the precision-recall curve (AUPR) curve, (b) internal balancing method of AutoML and class-weight of machine learning methods, and (c) data balancing using SMOTETomek─and generated 27 data sets considering nine different class ratios (i.e., the ratio of the positive class and total samples) from three data sets that belong to the drug discovery and development field. We have employed random forest (RF) and support vector machine (SVM) as representatives of ML classifier and AutoGluon-Tabular (version 0.6.1) and H2O AutoML (version 3.40.0.4) as representatives of AutoML tools. The important findings of our studies are as follows: (i) there is no effect of threshold optimization on ranking metrics such as AUC and AUPR, but AUC and AUPR get affected by class-weighting and SMOTTomek; (ii) for ML methods RF and SVM, significant percentage improvement up to 375, 33.33, and 450 over all the data sets can be achieved, respectively, for F1 score, MCC, and balanced accuracy, which are suitable for performance evaluation of imbalanced data sets; (iii) for AutoML libraries AutoGluon-Tabular and H2O AutoML, significant percentage improvement up to 383.33, 37.25, and 533.33 over all the data sets can be achieved, respectively, for F1 score, MCC, and balanced accuracy; (iv) the general pattern of percentage improvement in balanced accuracy is that the percentage improvement increases when the class ratio is systematically decreased from 0.5 to 0.1; in the case of F1 score and MCC, maximum improvement is achieved at the class ratio of 0.3; (v) for both ML and AutoML with balancing, it is observed that any individual class-balancing technique does not outperform all other methods on a significantly higher number of data sets based on F1 score; (vi) the three external balancing techniques combined outperformed the internal balancing methods of the ML and AutoML; (vii) AutoML tools perform as good as the ML models and in some cases perform even better for handling imbalanced classification when applied with imbalance handling techniques. In summary, exploration of multiple data balancing techniques is recommended for classifying imbalanced data sets to achieve optimal performance as neither of the external techniques nor the internal techniques outperform others significantly. The results are specific to the ML methods and AutoML libraries used in this study, and for generalization, a study can be carried out considering a sizable number of ML methods and AutoML libraries.
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Affiliation(s)
- Ayush Garg
- TCS Research (Life Sciences Division), Tata Consultancy Services Limited, Noida 201303, India
| | - Narayanan Ramamurthi
- TCS Research (Life Sciences Division), Tata Consultancy Services Limited, Chennai 600113, India
| | - Shyam Sundar Das
- TCS Research (Life Sciences Division), Tata Consultancy Services Limited, Kolkata 700160, India
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Dong Z, Zhu Y, Che R, Chen T, Liang J, Xia M, Wang F. Unraveling the complexity of organophosphorus pesticides: Ecological risks, biochemical pathways and the promise of machine learning. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025; 974:179206. [PMID: 40154081 DOI: 10.1016/j.scitotenv.2025.179206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2025] [Revised: 03/16/2025] [Accepted: 03/20/2025] [Indexed: 04/01/2025]
Abstract
Organophosphorus pesticides (OPPs) are widely used in agriculture but pose significant ecological and human health risks due to their persistence and toxicity in the environment. While microbial degradation offers a promising solution, gaps remain in understanding the enzymatic mechanisms, degradation pathways, and ecological impacts of OPP transformation products. This review aims to bridge these gaps by integrating traditional microbial degradation research with emerging machine learning (ML) technologies. We hypothesize that ML can enhance OPP degradation studies by improving the efficiency of enzyme discovery, pathway prediction, and ecological risk assessment. Through a comprehensive analysis of microbial degradation mechanisms, environmental factors, and ML applications, we propose a novel framework that combines biochemical insights with data-driven approaches. Our review highlights the potential of ML to optimize microbial strain screening, predict degradation pathways, and identify key active sites, offering innovative strategies for sustainable pesticide management. By integrating traditional research with cutting-edge ML technologies, this work contributes to the journal's scope by promoting eco-friendly solutions for environmental protection and pesticide pollution control.
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Affiliation(s)
- Zhongtian Dong
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, Jiangsu 210094, China; Institute of process engineering, Chinese Academy of Sciences, Beijing 100089, China
| | - Yining Zhu
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, Jiangsu 210094, China
| | - Ruijie Che
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, Jiangsu 210094, China
| | - Tao Chen
- China Ordnance Equipment Group Automation Research Institute CO., LTD, Mianyang 621000, China
| | - Jie Liang
- China Ordnance Equipment Group Automation Research Institute CO., LTD, Mianyang 621000, China
| | - Mingzhu Xia
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, Jiangsu 210094, China.
| | - Fenghe Wang
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, Jiangsu 210094, China.
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Edaugal J, Zhang D, Liu D, Glezakou VA, Sun N. Solvent Screening for Separation Processes Using Machine Learning and High-Throughput Technologies. CHEM & BIO ENGINEERING 2025; 2:210-228. [PMID: 40302870 PMCID: PMC12035567 DOI: 10.1021/cbe.4c00170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Revised: 02/13/2025] [Accepted: 02/16/2025] [Indexed: 05/02/2025]
Abstract
As the chemical industry shifts toward sustainable practices, there is a growing initiative to replace conventional fossil-derived solvents with environmentally friendly alternatives such as ionic liquids (ILs) and deep eutectic solvents (DESs). Artificial intelligence (AI) plays a key role in the discovery and design of novel solvents and the development of green processes. This review explores the latest advancements in AI-assisted solvent screening with a specific focus on machine learning (ML) models for physicochemical property prediction and separation process design. Additionally, this paper highlights recent progress in the development of automated high-throughput (HT) platforms for solvent screening. Finally, this paper discusses the challenges and prospects of ML-driven HT strategies for green solvent design and optimization. To this end, this review provides key insights to advance solvent screening strategies for future chemical and separation processes.
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Affiliation(s)
- Justin
P. Edaugal
- Advanced
Biofuels and Bioproducts Process Development Unit, Biological Systems
and Engineering Division, Lawrence Berkeley
National Laboratory, Emeryville, California 94608, United States
| | - Difan Zhang
- Physical
and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Dupeng Liu
- Advanced
Biofuels and Bioproducts Process Development Unit, Biological Systems
and Engineering Division, Lawrence Berkeley
National Laboratory, Emeryville, California 94608, United States
| | | | - Ning Sun
- Advanced
Biofuels and Bioproducts Process Development Unit, Biological Systems
and Engineering Division, Lawrence Berkeley
National Laboratory, Emeryville, California 94608, United States
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Taye EA, Woubet EY, Hailie GY, Zegeye AT, Arage FG, Zerihun TE, Kassaw AT. Random forest algorithm for predicting tobacco use and identifying determinants among pregnant women in 26 sub-Saharan African countries: a 2024 analysis. BMC Public Health 2025; 25:1506. [PMID: 40269837 PMCID: PMC12016066 DOI: 10.1186/s12889-025-22794-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Accepted: 04/14/2025] [Indexed: 04/25/2025] Open
Abstract
INTRODUCTION Tobacco use during pregnancy is a significant public health concern, associated with adverse maternal and neonatal outcomes. Despite its critical importance, comprehensive data on tobacco use among pregnant women in sub-Saharan Africa is limited. Leveraging machine learning approaches allows us to better understand these constraints and predict tobacco use among pregnant women, providing actionable insights for policy and intervention. OBJECTIVE This study aimed to predict tobacco use and identify its determinants among pregnant women in 26 SSA countries using machine learning algorithm. METHODS Using data from the Demographic and Health Surveys (2016-2023) across 26 SSA countries, we analyzed responses from 33,705 pregnant women. The Random Forest classifier, complemented by SHAP for feature interpretability, was employed for prediction and analysis. Data preprocessing included K-nearest neighbor imputation for missing values, SMOTE for handling class imbalance, and Recursive Feature Elimination for feature selection. Model performance was evaluated using metrics such as accuracy, recall, F1 score, and AUC-ROC. RESULTS The Random Forest model demonstrated robust performance, achieving an AUC-ROC of 98%, recall of 94%, and F1 score of 93%. Key predictors identified included maternal literacy, maternal education, wealth index, distance to healthcare facilities, and place of residence. Pregnant women with lower educational attainment, residing in rural areas, and from lower wealth quintiles were more likely to use tobacco. CONCLUSION AND RECOMMENDATIONS This study utilized a Random Forest machine learning algorithm to identify key predictors of tobacco use among pregnant women across 26 Sub-Saharan African countries. Significant factors included maternal literacy, education, wealth index, and healthcare access, highlighting systemic inequities contributing to tobacco dependency during pregnancy. These findings advocate for policies addressing educational disparities, economic inequalities, and barriers to healthcare access to reduce tobacco use and improve maternal and neonatal outcomes. Future research should incorporate longitudinal data to enhance predictive accuracy and inform policy development.
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Affiliation(s)
- Eliyas Addisu Taye
- Department of Health Informatics, Institute of Public Health, University of Gondar, Gondar, Ethiopia.
| | - Eden Yitbarek Woubet
- Department of Reproductive Health, Institute of Public Health, University of Gondar, Gondar, Ethiopia
| | - Gabrela Yimer Hailie
- Department of Environmental and Occupational Health and Safety, Institute of Public Health, University of Gondar, Gondar, Ethiopia
| | - Adem Tsegaw Zegeye
- Department of Health Informatics, Institute of Public Health, University of Gondar, Gondar, Ethiopia
| | - Fetlework Gubena Arage
- Department of Epidemiology and Biostatistics, Institute of Public Health, College of Medicine and Health Sciences, University of Gondar, Gondar, Ethiopia
| | - Tigabu Eskeziya Zerihun
- Department of Clinical Pharmacy, Pharmacy Education and Clinical Services Directorate, College of Health Sciences, Debre Tabor University, Debre Tabor, Ethiopia
| | - Abel Temeche Kassaw
- Department of Clinical Pharmacy, Pharmacy Education and Clinical Services Directorate, College of Health Sciences, Debre Tabor University, Debre Tabor, Ethiopia
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Wu H, Maimaiti A, Huang J, Xue J, Fu Q, Wang Z, Muertizha M, Li Y, Li D, Zhou Q, Wang Y. The establishment of machine learning prognostic prediction models for pineal region tumors based on SEER-A multicenter real-world study. EUROPEAN JOURNAL OF SURGICAL ONCOLOGY 2025; 51:110058. [PMID: 40300382 DOI: 10.1016/j.ejso.2025.110058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2024] [Revised: 04/02/2025] [Accepted: 04/13/2025] [Indexed: 05/01/2025]
Abstract
BACKGROUND Pineal region tumors (PRT) are rare intracranial neoplasms with diverse pathological types and growth characteristics, leading to varied clinical manifestations. This study aims to develop machine learning (ML) models for survival prediction, offering valuable insights for medical practice in the management of PRTs. METHODS Clinical information on PRTs was extracted from the Surveillance, Epidemiology, and End Results (SEER) database. The Kaplan-Meier (K-M) analysis was used to analyze the survival of PRT patients. Univariate and multivariate Cox regression analyses were conducted to identify risk factors for the survival of PRT patients. Then, nomograms were constructed. Seven ML models including Decision Tree, Logistic Regression, LightGBM, Random Forest, XGBoost, K-Nearest Neighbor Algorithm (KNN), and Support Vector Machine (SVM), were developed to predict the prognosis of PRT patients. The predictive value of ML models was evaluated by the area under the receiver's operating characteristic curve (AUC-ROC), tenfold cross verification, calibration curve, and decision curve analysis (DCA). RESULTS Univariate and multivariate Cox regression revealed that age, histopathology, radiotherapy, and tumor size were independent risk factors for overall survival (OS). Histopathology, surgery, radiotherapy, and tumor size were risk factors for cancer-specific survival (CSS). K-M survival analysis revealed that age, histopathology, marital status, radiotherapy, sex, and surgery significantly impacted OS, while age, histopathology, marital status, race, radiotherapy, sex, and surgery significantly influenced CSS. In the prediction of OS, the ML models with the best clinical utility were RF, Logistic Regression, and XGBoost. For CSS, the most effective models were RF, LightGBM, and RF. CONCLUSION ML models demonstrate significant potential and high predictive efficacy in forecasting long-term postoperative survival in PRT patients, providing substantial clinical value.
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Affiliation(s)
- Hao Wu
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Aierpati Maimaiti
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Jinlong Huang
- Department of Neurosurgery, Zhongshan Hospital, Fudan University, 180 Fenglin Road, Shanghai, 200032, China
| | - Jing Xue
- Department of Pathology, The First Afffliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Qiang Fu
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Zening Wang
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Mamutijiang Muertizha
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Yang Li
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Di Li
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Qingjiu Zhou
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China
| | - Yongxin Wang
- Department of Neurosurgery, Neurosurgery Centre, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China; Key Laboratory of Precision Diagnosis and Clinical Translation for Neurological Tumors of Xinjiang Medical University, Urumqi, Xinjiang, 830054, China.
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Villagran Asiares A, Vitadello T, Velarde OM, Schachoff S, Ibrahim T, Nekolla SG. Can multiparametric FDG-PET/MRI analysis really enhance the prediction of myocardial recovery after CTO revascularization? A machine learning study. Z Med Phys 2025:S0939-3889(25)00038-8. [PMID: 40268665 DOI: 10.1016/j.zemedi.2025.03.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2024] [Revised: 03/15/2025] [Accepted: 03/28/2025] [Indexed: 04/25/2025]
Abstract
PURPOSE To comprehensively evaluate the effectiveness of FDG-PET/MRI multiparametric analysis in predicting myocardial wall motion recovery following revascularization of chronic coronary total occlusions (CTO), incorporating both traditional and machine learning approaches. METHODS This retrospective study assessed fluorine-18 fluorodeoxyglucose uptake (FDG), late gadolinium enhanced MR imaging (LGE), and MR wall motion abnormalities (WMA) of the left ventricle walls of a clinical cohort with 21 CTO patients (62 ± 9 years, 20 men). All patients were examined using a PET/MRI prior to revascularization and a follow-up cardiac MRI six months later. Prediction models for wall motion recovery after perfusion restoration were developed using linear and nonlinear algorithms as well as multiparametric variables. Performance and prediction explainability were evaluated in a 5x2 cross-validation framework, using ROC AUC and McNemar's test modified for clustered matched-pair data, and Shapley values. RESULTS Based on 79 CTO-subtended myocardial wall segments with wall motion abnormalities at baseline, the reference logistic regression model LGE + FDG obtained 0.55(SE = 0.07) in the clustered ROC AUC (cROC AUC) and 0.17(0.05) in the Global Absolute Shapley value. The reference outperformed FDG standalone in cROC AUC (-35(17) %, p < 0.0001), but not LGE standalone (11(12) %, p > 0.05). There were no statistically significant differences between the marginal probabilities of success of these three models. Moreover, no significant improvements (differences < 10 % in cROC AUC, and < 20 % in Global Absolute Shapley, p > 0.05) were found when using mixed effects logistic regression, decision tree, k-nearest neighbor, Naive Bayes, random forest, and support vector machine, with multiparametric combinations of FDG, LGE, and/or WMA. CONCLUSION In this clinical cohort, adding more complex interactions between PET/MRI imaging of cardiac function, infarct extension, and/or metabolism did not enhance the prediction of wall motion recovery after perfusion restoration. This finding raises the question whether multiparametric FDG-PET/MRI analysis has demonstrable benefits in risk stratification for CTO revascularization. Further studies with larger cohorts and external validation datasets are crucial to clarify this question and refine the role of multiparametric imaging in this context.
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Affiliation(s)
- Alberto Villagran Asiares
- Nuklearmedizinische Klinik und Poliklinik, TUM Klinikum, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany; Klinik und Poliklinik für Kinder- und Jugendpsychiatrie, Psychosomatik und Psychotherapie. Klinikum der Ludwig-Maximilians-Universität München, Munich, Germany.
| | - Teresa Vitadello
- Klinik und Poliklinik für Innere Medizin I, TUM Klinikum, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
| | - Osvaldo M Velarde
- Biomedical Engineering Department, The City College of New York, New York, NY 10030, United States
| | - Sylvia Schachoff
- Nuklearmedizinische Klinik und Poliklinik, TUM Klinikum, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
| | - Tareq Ibrahim
- Klinik und Poliklinik für Innere Medizin I, TUM Klinikum, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany
| | - Stephan G Nekolla
- Nuklearmedizinische Klinik und Poliklinik, TUM Klinikum, Klinikum rechts der Isar, School of Medicine and Health, Technical University of Munich, Munich, Germany; Deutsches Zentrum für Herz-Kreislauf-Forschung e.V., partner site Munich Heart Alliance, Munich, Germany
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Lamarre M, Boudreau D. Lipopolysaccharide Detection with Glycan-Specific Lectins-a Nonspecific Binding Approach Applied to Surface Plasmon Resonance. ACS OMEGA 2025; 10:15610-15620. [PMID: 40290997 PMCID: PMC12019741 DOI: 10.1021/acsomega.5c00867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2025] [Revised: 03/31/2025] [Accepted: 04/02/2025] [Indexed: 04/30/2025]
Abstract
The detection and classification of lipopolysaccharides (LPS), pivotal constituents of Gram-negative bacteria, are fundamental to the progression of biosensing technologies in fields such as healthcare, environmental monitoring, and food safety. This study presents an innovative approach utilizing a panel of glycan-selective lectins in conjunction with surface plasmon resonance (SPR) providing a novel perspective on the evolution of biosensors within the context of the ongoing tension between the highly selective, one-probe-one-target methodology and the broader, resource-intensive approach that integrates complex and costly technological tools into the biosensing discipline. Guided by the principles of lean development, we employed a panel of lectins to construct multiprobe detection profiles, thereby facilitating the precise classification of LPS variants while minimizing both variability and resource expenditure. Advanced machine learning techniques were applied to optimize feature selection and enhance classification accuracy, demonstrating that a minimal set of four lectins sustains exceptional predictive performance. This synergy between traditional affinity techniques and data science enhances assay engineering efficiency, scalability, and integration into routine workflows, supporting frontline pathogen monitoring. This innovative approach holds promise for addressing global health challenges, providing more profound insights into biosensing methodologies, and expanding pathogen screening networks closer to the public and health safety management bodies.
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Affiliation(s)
- Mathieu Lamarre
- Department
of Chemistry, Pavillon Alexandre-Vachon, 1045, avenue de la Médecine, Université Laval, Quebec City, Quebec G1 V0A6, Canada
- Centre
d’optique, photonique et lasers (COPL), Pavillon d’Optique-Photonique,
2375 rue de la Terrasse, Université
Laval, Quebec City, Quebec G1 V0A6, Canada
| | - Denis Boudreau
- Department
of Chemistry, Pavillon Alexandre-Vachon, 1045, avenue de la Médecine, Université Laval, Quebec City, Quebec G1 V0A6, Canada
- Centre
d’optique, photonique et lasers (COPL), Pavillon d’Optique-Photonique,
2375 rue de la Terrasse, Université
Laval, Quebec City, Quebec G1 V0A6, Canada
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Song H, Liu T. Comment on "Black Box Prediction Methods in Sports Medicine Deserve a Red Card for Reckless Practice: A Change of Tactics is Needed to Advance Athlete Care". Sports Med 2025:10.1007/s40279-025-02222-5. [PMID: 40257738 DOI: 10.1007/s40279-025-02222-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/28/2025] [Indexed: 04/22/2025]
Affiliation(s)
- Honglin Song
- College of Physical Education and Sports, Beijing Normal University, 19 Xinjiekou Outer St, Haidian District, Beijing, 100084, China
| | - Tianbiao Liu
- College of Physical Education and Sports, Beijing Normal University, 19 Xinjiekou Outer St, Haidian District, Beijing, 100084, China.
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50
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de Luis Román D, López Gómez JJ, Barajas Galindo DE, García García C. Role of artificial intelligence in predicting disease-related malnutrition - A narrative review. NUTR HOSP 2025; 42:173-183. [PMID: 39873467 DOI: 10.20960/nh.05672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2025] Open
Abstract
Introduction Background: disease-related malnutrition (DRM) affects 30-50 % of hospitalized patients and is often underdiagnosed, increasing risks of complications and healthcare costs. Traditional DRM detection has relied on manual methods that lack accuracy and efficiency. Objective: this narrative review explores how artificial intelligence (AI), specifically machine learning (ML) and deep learning (DL), can transform the prediction and management of DRM in clinical settings. Methods: we examine widely used ML and DL models, assessing their clinical applicability, advantages, and limitations. The integration of these models into electronic health record systems allows for automated risk detection and optimizes real-time patient management. Results: ML and DL models show significant potential for accurate assessment of nutritional status and prediction of complications in patients with DRM. These models facilitate improved clinical decision-making and more efficient resource management, although their implementation faces challenges related to the need for large volumes of standardized data and integration with existing systems. Conclusion: AI offers promising prospects for proactive DRM management, highlighting the need for interdisciplinary collaboration to overcome existing barriers and maximize its positive impact on patient care.
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Affiliation(s)
- Daniel de Luis Román
- Servicio de Endocrinología y Nutrición. Hospital Clínico Universitario de Valladolid. Centro de Investigación en Endocrinología y Nutrición Clínica (IENVA). Facultad de Medicina. Universidad de Valladolid
| | - Juan José López Gómez
- Servicio de Endocrinología y Nutrición. Hospital Clínico Universitario de Valladolid. Centro de Investigación Endocrinología y Nutrición. Universidad de Valladolid
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