Original Article
Copyright ©2012 Baishideng Publishing Group Co.
World J Gastroenterol. Dec 14, 2012; 18(46): 6819-6828
Published online Dec 14, 2012. doi: 10.3748/wjg.v18.i46.6819
Table 1 General morphological scoring
General morphological manifestationScore
Colon adhesionNo adhesion0
Mild adhesion1
Severe adhesion2
Ulcer andNo ulcer and no inflammation0
inflammationLocal congestion, no ulcer1
1 ulcer without congestion or bowel wall thickening2
1 ulcer with inflammation3
> 2 ulcer and inflammation4
> 2 ulcer and/or inflammation area > 1 cm5
> 2 ulcer and/or inflammation area > 2 cm, one more damage, plus 16-8
Table 2 Immunopathological scoring
Immunopathological manifestationScore
UlcerNo ulcer0
Ulcer area < 3 cm1
Ulcer area > 3 cm2
InflammationNo inflammation0
Mild inflammation1
Severe inflammation2
GranulomaNo granuloma0
Granuloma1
Lesion depthNo lesion0
Submucosa1
Muscular layer2
Serosa layer3
FibrosisNo fibrosis0
Mild fibrosis1
Severe fibrosis2
Table 3 Oligonucleotide primers and TaqMan fluorescent probe sequences used for real-time polymerase chain reaction assays
Primer or probe namePrimer senseSequence (5’→3’)Amplification product (bp)
BifidobacteriumForward5'-ACTGGAATTCCCGGTGTAAC-3'85
Reverse5'-GTCAGTAACGGCCCAGAGAC-3'
Lactococcus lactisForward5'-CAACATTTGGAAACGAATGC-3'134
Reverse5'-CCTTGGTGAGCCTTTACCTC-3'
BacteroidesForward5'-ATTGCAGTGGAATGATGTGG-3'106
Reverse5'-TATGGCACTTAAGCCGACAC-3'
Bacillus vallismortisForward5'-ACCGCATGGTTCAGACATAA-3'88
Reverse5'-AGCCGTTACCTCACCAACT-3'