Basic Research
Copyright ©2005 Baishideng Publishing Group Inc.
World J Gastroenterol. Apr 14, 2005; 11(14): 2109-2116
Published online Apr 14, 2005. doi: 10.3748/wjg.v11.i14.2109
Table 1 The top 10 highly expressed genes in normal gallbladder tissue.
Name of geneSymbolGray level (mean±SD)
Breakpoint cluster region protein, uterine leiomyoma, 2BCRP22738.74±23.23
Actin-related protein 2/3 complex, subunit 5 (16 ku)ARPC52225.88±90.46
Eukaryotic translation initiation factor 4A, isoform 1EIF4A12223.86±274.74
Mitochondrial carrier family proteinLOC559722220.32±446.51
Solute carrier family 20 (phosphate transporter), member 2SLC20A21865.21±98.02
Cytochrome b5 reductase 1 (B5R.1)LOC517061851.01±298.45
ADP-ribosylation factor 1ARF11844.63±353.31
FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)FARP11654.95±126.85
Proteasome (prosome, macropain) activator subunit 2 (PA28 beta)PSME21635.33±148.15
cAMP responsive element binding protein-like 1CREBL11579.36±71.68
Table 2 Lipid-related genes expressed in normal gallbladder.
GenBank IDGene nameSymbolReported or notGray level (mean±SD)
NM_0008593-Hydroxy-3-methylglutaryl-Coenzyme A reductase2HMGCRP310.98±0.31
U666693-hydroxyisobutyryl-Coenzyme A hydrolaseHIBCH11.17±0.09
U29344Fatty acid synthaseFASN11.42±2.62
AA460901ATPase, aminophospholipid transporter-like, Class I, type 8A, member 2ATP8A211.53±1.08
BE730527Lipase proteinLOC57406P311.58±0.85
AL043165Homolog of mouse transient receptor potential-phospholipase; C-interacting kinase CHaK; hypothetical protein FLJ20117LTRPC711.59±0.69
U22662Nuclear receptor subfamily 1, group H, member 32NR1H311.77±0.85
M14564Cytochrome P450, subfamily XVII (steroid 17-alpha-hydroxylase), adrenal hyperplasiaCYP1712.06±1.35
M931073-Hydroxybutyrate dehydrogenase (heart, mitochondria)BDHP312.10±2.22
NM_019844Solute carrier family 21 (organic anion transporter), member 82SLC21A8P312.14±0.77
AK000184Acid sphingomyelinase-like phosphodiesteraseASM3A12.22±0.65
±X04506±Apolipoprotein B (including Ag(x) antigen)APOBU112.23±1.17
X87176Hydroxysteroid (17-beta) dehydrogenase 4HSD17B4U112.25±0.57
AF095703L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chainHADHSC12.37±1.66
AW022180ESTs, weakly similar to S14747 sphingomyelin phosphodiesterase [H. sapiens]12.39±2.40
U32576Apolipoprotein C-IVAPOC4U112.58±0.28
AI133376Human DNA sequence from clone RP11-16L21 on chromosome 9. Contains the gene for NADP-dependent leukotriene B4 12-hydroxydehydrogenase, the gene for a novel DnaJ domain protein similar to Drosophila, C. elegans and Arabidopsis predicted proteins, the GNG1012.75±1.64
AV658073Homolog of mouse transient receptor potential-phospholipase C-interacting kinase CHaKhypothetical protein FLJ20117LTRPC712.83±1.45
X03635Estrogen receptor 1ESR112.83±0.34
AF165514Hydroxysteroid (17-beta) dehydrogenase 7HSD17B7P312.99±0.56
NM_018557Low density lipoprotein-related protein 1B (deleted in tumors)LRP1B13.06±0.29
U22526Lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)LSS13.14±0.70
X836183-Hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial)HMGCS2P313.34±0.03
D14662Anti-oxidant protein 2 (non-selenium glutathione peroxidase, acidic calcium-independent phospholipase A2)KIAA0106U113.40±0.78
M62839Apolipoprotein H (beta-2-glycoprotein I)APOH13.49±0.20
Z99716Sterol regulatory element binding transcription factor 22SREBF2P313.53±2.31
AF126799Fatty acid desaturase 2FADS213.62±2.16
AV662152EST, moderately similar to LPHUC1 apolipoprotein C-I precursor [H. sapiens]13.63±1.57
M37238Phospholipase C, gamma 2 (phosphatidylinositol-specific)PLCG2P313.79±2.16
AF129756Apolipoprotein M G3A13.90±0.29
AW873435Lipase A, lysosomal acid, cholesterol esterase (Wolman’s disease)LIPA13.98±1.71
U09117Phospholipase C, delta 1PLCD1P314.06±0.58
AC007954Glutathione transferase zeta 1 (maleylacetoacetate isomerase)GSTZ114.13±0.76
AA706930Fatty acid binding protein 1, liverFABP1U114.19±0.25
AB011153Phosphoinositide-specific phospholipase C-beta 1PLCB114.65±2.22
AF038440Phospholipase D2PLD214.66±5.01
N42553Homolog of mouse transient receptor potential-phospholipase C-interacting kinase CHaKhypothetical protein FLJ20117LTRPC714.68±2.50
AL110209LCAT-like lysophospholipaseLLPL14.88±2.24
X13916Low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor)2LRP114.91±1.56
AI955289ESTs, weakly similar to DXHUBH 11beta-hydroxysteroid dehydrogenase [H.sapiens]14.96±1.66
AF077046Ganglioside expression factor 2GEF-215.11±1.98
Z34975Low density lipoprotein receptor defect C complementingLDLC15.18±2.11
BE271295Group XII secreted phospholipase A2PLA2G1215.64±1.27
U49248ATP-binding cassette, sub-family C (CFTR/MRP), member 22ABCC2U115.78±0.45
N78156Homolog of yeast long chain polyunsaturated fatty acid elongation enzyme 2HELO115.95±5.40
AB016247Sterol-C5-desaturase (fungal ERG3, delta-5-desaturase)-likeSC5DLP316.09±3.33
NM_000954Prostaglandin D2 synthase (21 ku, brain)PTGDS16.19±3.18
U60205Sterol-C4-methyl oxidase-likeSC4MOL16.22±1.29
AA557324ESTs, weakly similar to fatty acid omega-hydroxylase [H.sapiens]16.31±2.98
X664353-Hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)HMGCS1P316.46±2.32
AL117352Human DNA sequence from clone RP5-876B10 on chromosome 1q42.12-43. Contains the 3' end of the GNPAT gene for glyceronephosphate O-acyltransferase (DHAPAT, DAPAT, dihydroxyacetone phosphate acyltransferase, EC 2.3.1.42), the gene for a novel protein (ortho)16.74±0.16
BE737965Caveolin 1, caveolae protein, 22 ku2CAV116.74±2.50
Table 3 Lipid-related genes expressed in normal gallbladder.
U68233Nuclear receptor subfamily 1, group H, member 4**NR1H416.80±0.65
AF035284Fatty acid desaturase 1FADS1U116.82±0.92
X04898Apolipoprotein A-IIAPOA2U116.96±2.01
AL031295Lysophospholipase IILYPLA2P317.01±0.19
AL0312953-Hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)HMGCL17.01±0.19
M55150Fumarylacetoacetate hydrolase (fumarylacetoacetase)FAH17.41±2.04
M31210Endothelial differentiation, sphingolipid G-protein-coupled receptor, 1EDG117.56±0.62
BE395256Lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)LSS17.63±1.71
NM_000483Apolipoprotein C-IIAPOC2U117.71±1.70
L76465Hydroxyprostaglandin dehydrogenase 15-(NAD)HPGD17.86±0.79
S68287Aldo-keto reductase family 1, member C4 (chlordecone reductase 3-alpha hydroxysteroid dehydrogenase, type I dihydrodiol dehydrogenase 4)AKR1C4P318.11±2.89
M54927Proteolipid protein 1 (Pelizaeus-Merzbacher disease, spastic paraplegia 2, uncomplicated)PLP1P318.21±1.67
BE714757Lipase A, lysosomal acid, cholesterol esterase (Wolman’s disease)LIPA18.26±2.02
AJ238243Phospholipase A2-activating proteinPLAA18.73±3.07
AF077820Low density lipoprotein receptor-related protein 5LRP518.98±2.79
AL031778Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2APOBEC2P319.21±3.45
AC004770Fatty acid desaturase 1FADS1U119.22±9.65
AC004770Fatty acid desaturase 3FADS319.22±9.65
AA280051Fatty acid binding protein 1, liverFABP1U119.81±3.80
X67698Niemann–Pick disease, type C2 geneNPC220.53±1.84
AL049748Apolipoprotein L, 5APOL520.61±0.01
X51416Estrogen-related receptor alphaESRRA20.63±1.82
AF065215Phospholipase A2, group IVB (cytosolic)PLA2G4BP320.71±3.25
AB006746Phospholipid scramblase 1PLSCR1U121.33±0.62
M59979Prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)PTGS1P321.55±0.74
X02162Apolipoprotein A-IAPOA1U121.70±0.75
AF079167Oxidised low density lipoprotein (lectin-like) receptor 1OLR1P322.12±7.75
U55764Sulfotransferase, estrogen-preferringSTE22.15±2.72
J03459Leukotriene A4 hydrolaseLTA4H22.32±4.28
U03090Phospholipase A2, group VPLA2G5P322.88±2.74
M76665Hydroxysteroid (11-beta) dehydrogenase 1HSD11B1P322.98±3.71
NM_016108Androgen induced proteinAIG-1P323.02±3.33
AV651650ESTs, highly similar to AF237982 1 oxysterol 7 alpha-hydroxylase [H.sapiens]23.62±0.57
U11313Sterol carrier protein 22SCP2U123.92±0.18
NM_001645Apolipoprotein C-IAPOC1U125.02±12.59
X54741Cytochrome P450, subfamily XIB (steroid 11-beta-hydroxylase), polypeptide 2CYP11B225.13±3.81
X01388Apolipoprotein C-IIIAPOC325.17±4.82
R98624Bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase)BAATP325.26±16.74
U93305Proteolipid protein 2 (colonic epithelium-enriched)PLP2P325.41±2.44
U67963Lysophospholipase-likeHU-K526.75±5.28
D86096Prostaglandin E receptor 3 (subtype EP3)PTGER3P326.79±0.19
AL022398Hydroxysteroid (11-beta) dehydrogenase 1HSD11B126.82±8.70
X76488Lipase A, lysosomal acid, cholesterol esterase (Wolman’s disease)LIPA27.10±11.84
AF019225Apolipoprotein LAPOL1U128.12±1.76
AL034374Homolog of yeast long chain polyunsaturated fatty acid elongation enzyme 2HELO128.76±4.09
AI675602EST, moderately similar to I65981 fatty acid omega-hydroxylase [H.sapiens]28.85±13.77
U89281Oxidative 3 alpha hydroxysteroid dehydrogenase; retinol dehydrogenase; 3-hydroxysteroid epimeraseRODH29.09±7.19
AL022318Phorbolin (similar to apolipoprotein B mRNA editing protein)DJ742C19.229.26±5.26
X07228Lipase, hepaticLIPCP330.57±4.34
AL031230Glycosylphosphatidylinositol specific phospholipase D1GPLD130.88±1.21
AA128778Tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)TFPI32.76±0.09
Z99390L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chainHADHSC33.87±0.98
AF002020Niemann–Pick disease, type C12NPC134.88±12.12
X55764Cytochrome P450, subfamily XIB (steroid 11-beta-hydroxylase), polypeptide 1CYP11B134.95±1.61
L34081Bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase)BAATP337.8±3.91
AF002668Degenerative spermatocyte (homolog Drosophila lipid desaturase)DEGS37.93±4.50
AF0345447-Dehydrocholesterol reductaseDHCR738.05±2.80
D82073Prostaglandin D2 synthase, hematopoieticPGDS38.83±13.58
Z37986Emopamil-binding protein (sterol isomerase)EBP41.25±12.24
L21934Sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1SOAT1P344.08±1.76
L21934Sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 12SOAT1P344.08±1.76
Table 4 Lipid-related genes expressed in normal gallbladder.
U68233Nuclear receptor subfamily 1, group H, member 4**NR1H416.80±0.65
AF035284Fatty acid desaturase 1FADS1U116.82±0.92
X04898Apolipoprotein A-IIAPOA2U116.96±2.01
AL031295Lysophospholipase IILYPLA2P317.01±0.19
AL0312953-Hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)HMGCL17.01±0.19
M55150Fumarylacetoacetate hydrolase (fumarylacetoacetase)FAH17.41±2.04
M31210Endothelial differentiation, sphingolipid G-protein-coupled receptor, 1EDG117.56±0.62
BE395256Lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)LSS17.63±1.71
NM_000483Apolipoprotein C-IIAPOC2U117.71±1.70
L76465Hydroxyprostaglandin dehydrogenase 15-(NAD)HPGD17.86±0.79
S68287Aldo-keto reductase family 1, member C4 (chlordecone reductase 3-alpha hydroxysteroid dehydrogenase, type I dihydrodiol dehydrogenase 4)AKR1C4P318.11±2.89
M54927Proteolipid protein 1 (Pelizaeus-Merzbacher disease, spastic paraplegia 2, uncomplicated)PLP1P318.21±1.67
BE714757Lipase A, lysosomal acid, cholesterol esterase (Wolman’s disease)LIPA18.26±2.02
AJ238243Phospholipase A2-activating proteinPLAA18.73±3.07
AF077820Low density lipoprotein receptor-related protein 5LRP518.98±2.79
AL031778Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2APOBEC2P319.21±3.45
AC004770Fatty acid desaturase 1FADS1U119.22±9.65
AC004770Fatty acid desaturase 3FADS319.22±9.65
AA280051Fatty acid binding protein 1, liverFABP1U119.81±3.80
X67698Niemann–Pick disease, type C2 geneNPC220.53±1.84
AL049748Apolipoprotein L, 5APOL520.61±0.01
X51416Estrogen-related receptor alphaESRRA20.63±1.82
AF065215Phospholipase A2, group IVB (cytosolic)PLA2G4BP320.71±3.25
AB006746Phospholipid scramblase 1PLSCR1U121.33±0.62
M59979Prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)PTGS1P321.55±0.74
X02162Apolipoprotein A-IAPOA1U121.70±0.75
AF079167Oxidised low density lipoprotein (lectin-like) receptor 1OLR1P322.12±7.75
U55764Sulfotransferase, estrogen-preferringSTE22.15±2.72
J03459Leukotriene A4 hydrolaseLTA4H22.32±4.28
U03090Phospholipase A2, group VPLA2G5P322.88±2.74
M76665Hydroxysteroid (11-beta) dehydrogenase 1HSD11B1P322.98±3.71
NM_016108Androgen induced proteinAIG-1P323.02±3.33
AV651650ESTs, highly similar to AF237982 1 oxysterol 7 alpha-hydroxylase [H.sapiens]23.62±0.57
U11313Sterol carrier protein 22SCP2U123.92±0.18
NM_001645Apolipoprotein C-IAPOC1U125.02±12.59
X54741Cytochrome P450, subfamily XIB (steroid 11-beta-hydroxylase), polypeptide 2CYP11B225.13±3.81
X01388Apolipoprotein C-IIIAPOC325.17±4.82
R98624Bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase)BAATP325.26±16.74
U93305Proteolipid protein 2 (colonic epithelium-enriched)PLP2P325.41±2.44
U67963Lysophospholipase-likeHU-K526.75±5.28
D86096Prostaglandin E receptor 3 (subtype EP3)PTGER3P326.79±0.19
AL022398Hydroxysteroid (11-beta) dehydrogenase 1HSD11B126.82±8.70
X76488Lipase A, lysosomal acid, cholesterol esterase (Wolman’s disease)LIPA27.10±11.84
AF019225Apolipoprotein LAPOL1U128.12±1.76
AL034374Homolog of yeast long chain polyunsaturated fatty acid elongation enzyme 2HELO128.76±4.09
AI675602EST, moderately similar to I65981 fatty acid omega-hydroxylase [H.sapiens]28.85±13.77
U89281Oxidative 3 alpha hydroxysteroid dehydrogenase; retinol dehydrogenase; 3-hydroxysteroid epimeraseRODH29.09±7.19
AL022318Phorbolin (similar to apolipoprotein B mRNA editing protein)DJ742C19.229.26±5.26
X07228Lipase, hepaticLIPCP330.57±4.34
AL031230Glycosylphosphatidylinositol specific phospholipase D1GPLD130.88±1.21
AA128778Tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)TFPI32.76±0.09
Z99390L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chainHADHSC33.87±0.98
AF002020Niemann–Pick disease, type C12NPC134.88±12.12
X55764Cytochrome P450, subfamily XIB (steroid 11-beta-hydroxylase), polypeptide 1CYP11B134.95±1.61
L34081Bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase)BAATP337.8±3.91
AF002668Degenerative spermatocyte (homolog Drosophila lipid desaturase)DEGS37.93±4.50
AF0345447-Dehydrocholesterol reductaseDHCR738.05±2.80
D82073Prostaglandin D2 synthase, hematopoieticPGDS38.83±13.58
Z37986Emopamil-binding protein (sterol isomerase)EBP41.25±12.24
L21934Sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1SOAT1P344.08±1.76
L21934Sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 12SOAT1P344.08±1.76
Table 5 Lipid-related genes expressed in normal gallbladder.
M12792Cytochrome P450, subfamily XXIA (steroid 21-hydroxylase, congenital adrenal hyperplasia), polypeptide 2CYP21A244.19±7.57
L07077Enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenaseEHHADH45.78±6.21
BE566894Human DNA sequence from clone RP11-16L21 on chromosome 9. Contains the gene for NADP-dependent leukotriene B4 12-hydroxydehydrogenase, the gene for a novel DnaJ domain protein similar to Drosophila, C. elegans and Arabidopsis predicted proteins, the GNG10U147.45±1.75
NM_016371Hydroxysteroid (17-beta) dehydrogenase 7HSD17B748.38±6.73
AF151638Phosphatidylcholine transfer protein2PCTPP353.38±6.96
M12529Apolipoprotein E2APOEP353.51±9.77
AL034369Human DNA sequence from clone 149D17 on chromosome Xq22.2-23. Contains part of a PLRP2 (PNLIPRP2, pancreatic lipase-related protein 2 Precursor, EC 3.1.1.3) LIKE gene and 5' exons of the COL4A5 and alternatively spliced COL4A6 genes for Collagen, type IV54.46±5.61
M22430Phospholipase A2, group IIA (platelets, synovial fluid)PLA2G2AP358.57±9.02
AK000339Long-chain fatty acid Coenzyme A ligase 5FACL5U158.82±3.86
NM_013389NPC1 (Niemann–Pick disease, type C1, gene)-like 1NPC1L1U159.9±13.58
M63959Low density lipoprotein-related protein-associated protein 1 (alpha-2-macroglobulin receptor-associated protein 1)2LRPAP1U160.24±6.70
AF263613Intracellular membrane-associated calcium-independent phospholipase A2 gammaIPLA2(GAMMA)60.96±13.23
Z294813-Hydroxyanthranilate 3,4-dioxygenaseHAAO62.47±0.09
D38081Thromboxane A2 receptorTBXA2R66.03±19.67
X71973Glutathione peroxidase 4 (phospholipid hydroperoxidase)GPX469.27±12.44
AW662196Apolipoprotein L, 2APOL2P379.49±5.89
AI5900763-Hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)HMGCS1P383.08±4.33
AL022398Homo sapiens DNA sequence from PAC 434O14 on chromosome 1q32.3.-41. Contains the HSD11B1 gene for hydroxysteroid (11-beta) dehydrogenase 1, the ADORA2BP adenosine A2b receptor LIKE pseudogene, the IRF6 gene for Interferon Regulatory Factor 6 and two novel85.30±14.15
AL022394Phospholipase C, gamma 1 (formerly subtype 148)PLCG1P385.54±21.21
Z82215Apolipoprotein LAPOL1U189.89±16.36
J02611Apolipoprotein DAPOD92.61±8.90
U19487Prostaglandin E receptor 2 (subtype EP2), 53 kuPTGER2P395.40±18.27
X59812Cytochrome P450, subfamily XXVIIA (steroid 27-hydroxylase, cerebrotendinous xanthomatosis), polypeptide 12CYP27A1P3100.70±10.81
AF070675Apolipoprotein L, 3APOL3U1105.58±12.73
U00968Sterol regulatory element binding transcription factor 12SREBF1P3107.4±8.65
AB018580Aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroidAKR1C3 dehydrogenase, type II)2P3110.69±31.00
X98332Solute carrier family 22 (organic cation transporter), member 12SLC22A1P3112.02±22.09
M10617Fatty acid binding protein 1, liver2FABP1U1117.5±11.59
L11702Glycosylphosphatidylinositol specific phospholipase D1GPLD1149.16±33.78
X06290Lipoprotein, Lp(a)LPAP3156.94±26.59
X14723Clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)CLUU1163.92±11.19
BE0185773-Hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)HMGCS1P3169.72±16.05
U23942Cytochrome P450, 51 (lanosterol 14-alpha-demethylase)CYP51219.74±47.13
AL049547Cytochrome P450, subfamily XXIA (steroid 21-hydroxylase, congenital adrenal hyperplasia), polypeptide 2CYP21A2246.11±42.36
AF081281Lysophospholipase ILYPLA1P3348.56±34.15
L40802Hydroxysteroid (17-beta) dehydrogenase 2HSD17B2396.94±5.65