Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections

doi:10.3748/wjg.v27.i14.1465

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World Journal of Gastroenterology

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1007-9327

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

Retrospective Cohort Study

World J Gastroenterol. Apr 14, 2021; 27(14): 1465-1482
Published online Apr 14, 2021. doi: 10.3748/wjg.v27.i14.1465

Table 5 Operational taxonomic units (genus level) with significant tumor histology*pre-operative antibiotics interaction terms

OTU (genus level)
Actinobacteria/Gardnerella
Actinobacteria/Eggerthella
Firmicutes/Bacilli/unspecified
Firmicutes/Staphylococcus
Firmicutes/Parvimonas
Firmicutes/Anaerostipes
Firmicutes/Howardella
Firmicutes/Solobacterium
Fusobacteria/Fusobacteriales/unspecified
Fusobacteria/Leptotrichia
Proteobacteria/Sutterella
Proteobacteria/Ralstonia
Proteobacteria/Enterobacter
Proteobacteria/Haemophilus

OTU: Operational taxonomic unit.

Citation: Malik SA, Zhu C, Li J, LaComb JF, Denoya PI, Kravets I, Miller JD, Yang J, Kramer M, McCombie WR, Robertson CE, Frank DN, Li E. Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections. World J Gastroenterol 2021; 27(14): 1465-1482
URL: https://www.wjgnet.com/1007-9327/full/v27/i14/1465.htm
DOI: https://dx.doi.org/10.3748/wjg.v27.i14.1465