| 1 |
Neely BA, Dorfer V, Martens L, Bludau I, Bouwmeester R, Degroeve S, Deutsch EW, Gessulat S, Käll L, Palczynski P, Payne SH, Rehfeldt TG, Schmidt T, Schwämmle V, Uszkoreit J, Vizcaíno JA, Wilhelm M, Palmblad M. Toward an Integrated Machine Learning Model of a Proteomics Experiment. J Proteome Res 2023;22:681-96. [PMID: 36744821 DOI: 10.1021/acs.jproteome.2c00711] [Reference Citation Analysis]
|
| 2 |
Malmgren L, Öberg C, den Bakker E, Leion F, Siódmiak J, Åkesson A, Lindström V, Herou E, Dardashti A, Xhakollari L, Grubb G, Strevens H, Abrahamson M, Helmersson-Karlqvist J, Magnusson M, Björk J, Nyman U, Ärnlöv J, Ridefelt P, Åkerfeldt T, Hansson M, Sjöström A, Mårtensson J, Itoh Y, Grubb D, Tenstad O, Hansson LO, Olafsson I, Campos AJ, Risch M, Risch L, Larsson A, Nordin G, Pottel H, Christensson A, Bjursten H, Bökenkamp A, Grubb A. The complexity of kidney disease and diagnosing it - cystatin C, selective glomerular hypofiltration syndromes and proteome regulation. J Intern Med 2023;293:293-308. [PMID: 36385445 DOI: 10.1111/joim.13589] [Reference Citation Analysis]
|
| 3 |
Fasano M, Alberio T. Neurodegenerative disorders: From clinicopathology convergence to systems biology divergence. Handb Clin Neurol 2023;192:73-86. [PMID: 36796949 DOI: 10.1016/B978-0-323-85538-9.00007-9] [Reference Citation Analysis]
|
| 4 |
Li C, Xiao J, Wu S, Liu L, Zeng X, Zhao Q, Zhang Z. Clinical application of serum-based proteomics technology in human tumor research. Anal Biochem 2023;663:115031. [PMID: 36580994 DOI: 10.1016/j.ab.2022.115031] [Reference Citation Analysis]
|
| 5 |
Deutsch EW, Mendoza L, Shteynberg DD, Hoopmann MR, Sun Z, Eng JK, Moritz RL. Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite. J Proteome Res 2023;22:615-24. [PMID: 36648445 DOI: 10.1021/acs.jproteome.2c00624] [Reference Citation Analysis]
|
| 6 |
Rehfeldt TG, Gabriels R, Bouwmeester R, Gessulat S, Neely BA, Palmblad M, Perez-Riverol Y, Schmidt T, Vizcaíno JA, Deutsch EW. ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. J Proteome Res 2023;22:632-6. [PMID: 36693629 DOI: 10.1021/acs.jproteome.2c00629] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 7 |
Tanuwidjaya E, Schittenhelm RB, Faridi P. Soluble HLA peptidome: A new resource for cancer biomarkers. Front Oncol 2022;12:1069635. [PMID: 36620582 DOI: 10.3389/fonc.2022.1069635] [Reference Citation Analysis]
|
| 8 |
Boada P, Fatou B, Belperron AA, Sigdel TK, Smolen KK, Wurie Z, Levy O, Ronca SE, Murray KO, Liberto JM, Rashmi P, Kerwin M, Montgomery RR, Bockenstedt LK, Steen H, Sarwal MM. Longitudinal serum proteomics analyses identify unique and overlapping host response pathways in Lyme disease and West Nile virus infection. Front Immunol 2022;13:1012824. [PMID: 36569838 DOI: 10.3389/fimmu.2022.1012824] [Reference Citation Analysis]
|
| 9 |
Shen CY, Chang WH, Chen YJ, Weng CW, Regmi P, Kier MKK, Su KY, Chang GC, Chen JS, Chen YJ, Yu SL. Tissue Proteogenomic Landscape Reveals the Role of Uncharacterized SEL1L3 in Progression and Immunotherapy Response in Lung Adenocarcinoma. J Proteome Res 2022. [PMID: 36349894 DOI: 10.1021/acs.jproteome.2c00382] [Reference Citation Analysis]
|
| 10 |
The M, Samaras P, Kuster B, Wilhelm M. Reanalysis of ProteomicsDB Using an Accurate, Sensitive, and Scalable False Discovery Rate Estimation Approach for Protein Groups. Mol Cell Proteomics 2022;21:100437. [PMID: 36328188 DOI: 10.1016/j.mcpro.2022.100437] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 11 |
He B, Huang Z, Huang C, Nice EC. Clinical applications of plasma proteomics and peptidomics: Towards precision medicine. Proteomics Clin Appl 2022;16:e2100097. [PMID: 35490333 DOI: 10.1002/prca.202100097] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 9.0] [Reference Citation Analysis]
|
| 12 |
Zuo M, Sun R, Dong M. D/E-rich peptides are less suitable than D/E-deficient peptides for identification by negative-ion HCD due to scarce production of sequencing ions from multiply charged precursors. International Journal of Mass Spectrometry 2022. [DOI: 10.1016/j.ijms.2022.116975] [Reference Citation Analysis]
|
| 13 |
Omenn GS, Lane L, Overall CM, Pineau C, Packer NH, Cristea IM, Lindskog C, Weintraub ST, Orchard S, Roehrl MHA, Nice E, Liu S, Bandeira N, Chen YJ, Guo T, Aebersold R, Moritz RL, Deutsch EW. The 2022 Report on the Human Proteome from the HUPO Human Proteome Project. J Proteome Res 2022. [PMID: 36318223 DOI: 10.1021/acs.jproteome.2c00498] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 14 |
Tarca AL, Romero R, Bhatti G, Gotsch F, Done B, Gudicha DW, Gallo DM, Jung E, Pique-Regi R, Berry SM, Chaiworapongsa T, Gomez-Lopez N. Human Plasma Proteome During Normal Pregnancy. J Proteome Res 2022. [PMID: 36154181 DOI: 10.1021/acs.jproteome.2c00391] [Reference Citation Analysis]
|
| 15 |
Méar L, Sutantiwanichkul T, Östman J, Damdimopoulou P, Lindskog C. Spatial Proteomics for Further Exploration of Missing Proteins: A Case Study of the Ovary. J Proteome Res 2022. [PMID: 36108145 DOI: 10.1021/acs.jproteome.2c00392] [Reference Citation Analysis]
|
| 16 |
Zuo M, Sun R, Dong M. Collisional dissociation of 115 deprotonated peptides of 5-28 amino acids—an updated report on fragment ion types, neutral loss species, and the effect of acidic residues.. [DOI: 10.1101/2022.06.30.498346] [Reference Citation Analysis]
|
| 17 |
Foster LJ. The adult mouse proteome. Nat Methods 2022. [PMID: 35739311 DOI: 10.1038/s41592-022-01546-8] [Reference Citation Analysis]
|
| 18 |
Fabre B, Choteau SA, Duboé C, Pichereaux C, Montigny A, Korona D, Deery MJ, Camus M, Brun C, Burlet-Schiltz O, Russell S, Combier JP, Lilley KS, Plaza S. In Depth Exploration of the Alternative Proteome of Drosophila melanogaster. Front Cell Dev Biol 2022;10:901351. [PMID: 35721519 DOI: 10.3389/fcell.2022.901351] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 19 |
Dayon L, Cominetti O, Affolter M. Proteomics of Human Biological Fluids for Biomarker Discoveries: Technical Advances and Recent Applications. Expert Rev Proteomics 2022. [PMID: 35466824 DOI: 10.1080/14789450.2022.2070477] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 20 |
Fabre B, Choteau SA, Duboé C, Pichereaux C, Montigny A, Korona D, Deery MJ, Camus M, Brun C, Burlet-schiltz O, Russell S, Combier J, Lilley KS, Plaza S. In depth exploration of the alternative proteome of Drosophila melanogaster.. [DOI: 10.1101/2022.03.16.484563] [Reference Citation Analysis]
|
| 21 |
Bradshaw RA. Protein Sequence Determination: Methodology and Evolutionary Implications. Reference Module in Life Sciences 2022. [DOI: 10.1016/b978-0-12-821618-7.00198-x] [Reference Citation Analysis]
|
| 22 |
Deutsch EW, Omenn GS, Sun Z, Maes M, Pernemalm M, Palaniappan KK, Letunica N, Vandenbrouck Y, Brun V, Tao SC, Yu X, Geyer PE, Ignjatovic V, Moritz RL, Schwenk JM. Advances and Utility of the Human Plasma Proteome. J Proteome Res 2021. [PMID: 34672606 DOI: 10.1021/acs.jproteome.1c00657] [Cited by in Crossref: 12] [Cited by in F6Publishing: 16] [Article Influence: 6.0] [Reference Citation Analysis]
|
