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©The Author(s) 2026.
World J Methodol. Mar 20, 2026; 16(1): 108875
Published online Mar 20, 2026. doi: 10.5662/wjm.v16.i1.108875
Table 5 Comparison of common methods of fecal microbiota transplantation administration

Enema
Capsule
Colonoscopy
Nasogastric, nasoduodenal or nasojejunal tube
DeliveryDistal colonSmall intestine/colonRight colon/terminal ileumUpper GI tract to stomach/duodenum/jejunum
Starting amount of feces25-200 g80-100 g25-200 g12.5-150 g
Final delivery volume per dose300-500 mL30-40 capsules30-500 mL30-500 mL
ProsWell tolerated, no sedation, can be done at homeNon-invasive, faster, well-toleratedHigher efficacyMinimally invasive, avoids sedation risks
ConsRetention difficulty, lower efficacyRequires multiple doses, risk of gastric acid degradation; avoid FMT capsules if the patient has dysphagia, difficulty swallowing pills or gastroparesisInvasive, requires sedation, risk of perforationRisk of aspiration, patient discomfort


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