Basic Study
Copyright ©The Author(s) 2021.
World J Hepatol. Jan 27, 2021; 13(1): 94-108
Published online Jan 27, 2021. doi: 10.4254/wjh.v13.i1.94
Table 1 List of the final 85 selected publications for each layer of data. For each publication the number of hepatocellular carcinoma samples and controls and the platform used for the analysis are reported
Gene expression
No.yearPMIDHCC (n)Controls (n)GEO dataset
12004173935203513GSE6764
2200818504433112GSE6222
32008189231658082GSE10143
42009190989974758GSE14323
52009198615151647GSE17967
62011213204993434GSE20140 (GSE10141, GSE10140)
72011217124454040GSE28248
82013236911391515GSE17548
9201323800896GSE36376_276; GSE25097_211GSE36376_247; GSE25097_283GSE36376, GSE25097
102014244980024646GSE47595
112014245644074545GSE45114
122014250935043940GSE57958
132014251418671111GSE55092
142014253763021818GSE60502
152014255360567272GSE39791
16201525666192132132GSE54236
17201525645722228168GSE63898
182016274999186060GSE64041
192016259640792620GSE54238
Proteomics
No.yearPMIDHCC (n)Controls (n)
120041472649288
22008190038641212
32005157593161010
42005160970301414
52007176279331212
620142362163433
720091956280533
82016267097252412
92013235893622020
102012228138771010
112012220822271111
1220112163110969123
1320102023004655
142010199568372020
152009197156081818
1620091953509533
172009191613268080
182004152217722020
192003146737982121
202003146545282121
212002124812711111
2220132346220777
2320051633595188
242006163422421010
2520112203487233
2620051585230077
2720112191371733
282007172039742528
292007175862771010
Whole exome sequencing
No.yearPMIDHCC (n)Controls (n)GEO dataset
120132391267733N/A
220142405550847N/A
320172832312355N/A
4201424798001231231GSE54504
52012225615172424N/A
Epigenetic_miRNAs
No.yearPMIDHCC (n)Controls (n)GEO dataset
120152619016097N/A
2201424789420109GSE31383
32014245644074545GSE10694
42011212980087373GSE21362
52008186493637810N/A
62012221351592020N/A
72011213199969494N/A
82009194734412020N/A
920091917327735N/A
102007181713461010N/A
112006163312542525N/A
122015260628883030N/A
1320152604678032743N/A
142015258612556666GSE54751
1520152550007566GSE54537
162014248756492424
17201323812667166166GSE31384
18201323390000917GSE40744
192012230820621818N/A
202014245867852929N/A
212013244179707878N/A
Epigenetic methylation
No.yearPMIDHCC (n)Controls (n)GEO dataset
12011215001881312N/A
22014243066624545N/A
32014253762922222N/A
420152594512988GSE59260
52011217471161212GSE29720
62010201658822020GSE18081
72012222349436262GSE37988
8201324012984208GSE44970
92013232080766666GSE54503
102014250935045959GSE57956
112014252948082727GSE60753