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World J Stem Cells. Sep 26, 2026; 18(9): 124169
Published online Sep 26, 2026. doi: 10.4252/wjsc.124169
Table 2 Functional phenotyping platforms for induced pluripotent stem cell-derived neuronal models in psychiatry
Platform
Primary readout
Strengths
Limitations
Best suited for
Patch clampSingle-cell electrophysiology (action potentials, synaptic currents, ion-channel function)Highest functional resolution; direct measurement of neuronal physiologyLow throughput; technically demandingMechanistic studies and validation of ion-channel or synaptic phenotypes
MEANetwork activity, burst dynamics, synchronyNon-invasive, longitudinal recordings; suitable for moderate-throughput screeningLimited single-cell resolution; influenced by culture density and maturityDrug screening, network phenotyping, subgroup identification
Calcium imagingSingle-cell and network activity dynamicsHigher throughput than patch clamp; enables population-level analysisIndirect measure of electrical activity; lower temporal resolutionFunctional comparison between donor groups and pharmacological studies
High-content imagingNeurite morphology, synaptic markers, cell survivalScalable and highly multiplexedPrimarily structural rather than functionalMorphological phenotyping and toxicity/rescue assays
Single-cell/spatial transcriptomicsCell identity, pathway activity, cellular compositionHigh molecular resolution; identifies disease-associated cell statesDestructive, expensive, not a direct functional assayMolecular characterization, organoid quality control, pathway discovery


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