Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections

doi:10.3748/wjg.v27.i14.1465

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World Journal of Gastroenterology

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1007-9327

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Gastroenterol. Apr 14, 2021; 27(14): 1465-1482
Published online Apr 14, 2021. doi: 10.3748/wjg.v27.i14.1465

Table 8 Differentially expressed genes, (+)antibiotics vs (-)antibiotics, common to both tumor and nontumor samples

Gene (increased)	Symbol	Tumor log₂fold change	Tumor adjusted P value	Nontumor log₂fold change	Nontumor adjusted P value
ENSG00000023902	PLEKHO1	1.127	0.0461	1.694	0.0130
ENSG00000253304	TMEM200B	1.326	0.0445	1.719	0.0481
ENSG00000187608	ISG15	1.534	0.0301	2.202	0.0102
ENSG00000185745	IFIT1	1.708	0.0243	2.245	0.0176
ENSG00000109705	NKX3-2	2.082	0.0476	2.859	0.0264
ENSG00000145936	KCNMB1	2.011	0.0480	2.874	0.0176

Citation: Malik SA, Zhu C, Li J, LaComb JF, Denoya PI, Kravets I, Miller JD, Yang J, Kramer M, McCombie WR, Robertson CE, Frank DN, Li E. Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections. World J Gastroenterol 2021; 27(14): 1465-1482
URL: https://www.wjgnet.com/1007-9327/full/v27/i14/1465.htm
DOI: https://dx.doi.org/10.3748/wjg.v27.i14.1465