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Copyright ©2014 Baishideng Publishing Group Inc.
World J Gastroenterol. Nov 21, 2014; 20(43): 16062-16078
Published online Nov 21, 2014. doi: 10.3748/wjg.v20.i43.16062
Table 1 Available genomics data (GenBank, March 2014) from methanogens of the human gut
SpeciesStrain (DSMZ collection number)Status1Size (Mb)GC%mtaBSHAccessionGenome reference
ABCgenenumber
Methanobacteriales
Methanobrevibacter smithiiPS (DSM 861)Chromosome1.8531.011CP000678.1[54]
F1 (DSM 2374)Scaffolds1.7331.301ABYV00000000[126]
ALI (DSM 2375)Scaffolds1.7131.311ABYW00000000[126]
TS145AContigs1.7831.11212AEKU00000000[55]
TS145BContigs1.8031.11212AELL00000000
TS146AContigs1.7931.21212AELM00000000
TS146BContigs1.7931.11212AELN00000000
TS146CContigs1.9531.21212AELO00000000
TS146DContigs1.7131.11212AELP00000000
TS146EContigs1.9530.41212AELQ00000000
TS147AContigs2.0130.51212AELR00000000
TS147BContigs1.9730.41212AELS00000000
TS147CContigs1.9730.41212AELT00000000
TS94AContigs1.8930.21212AELU00000000
TS94BContigs1.8930.21212AELV00000000
TS94CContigs1.9130.31212AELW00000000
TS95AContigs1.9930.21212AELX00000000
TS95BContigs1.9730.21212AELY00000000
TS95CContigs1.9830.21212AELZ00000000
TS95DContigs2.0130.21212AEMA00000000
TS96AContigs1.9830.31212AEMB00000000
TS96BContigs1.8730.21212AEMC00000000
TS96CContigs1.8231.11212AEMD00000000
Methanobrevibacter arboriphilusANOR1Scaffolds2.2225.51222CBVX000000000[83]
Methanobrevibacter oralisJMR01Scaffolds2.1127.822CBWS000000000[63]
Methanosphaera stadtmanae(DSM 3091)Chromosome1.7727.641CP000102[58]
Methanomassiliicoccales
Methanomassiliicoccus luminyensisB10 (DSM 25720)Contigs2.6260.5330CAJE00000000[88]
Ca. Methanomassiliicoccus intestinalisIssoire-Mx1Chromosome1.9341.3330CP005934[87]
Ca. Methanomethylophilus alvusMx1201Chromosome1.6755.6131CP004049[86]