Brief Article
Copyright ©2013 Baishideng Publishing Group Co.
World J Gastroenterol. Nov 7, 2013; 19(41): 7121-7128
Published online Nov 7, 2013. doi: 10.3748/wjg.v19.i41.7121
Table 3 Ranking of the candidate single reference genes by each software package used
NormFinder
geNorm
BestKeeper
DataAssist
Stability value1RankingM value1RankingCoefficient of variance1RankingScore1Ranking
Neoplastic tissues
0.24ACTB0.07GAPDH9.78ACTB1.58ACTB
0.73B2M0.07B2M11.77B2M1.70B2M
0.99GAPDH0.08ACTB13.39GAPDH1.88GAPDH
1.4118S rRNA0.1218S rRNA17.1418S rRNA2.2518S rRNA
Adjacent non-neoplastic tissues
0.61B2M0.05GAPDH7.80ACTB1.65B2M
0.65GAPDH0.05B2M9.61B2M1.77ACTB
0.65ACTB0.07ACTB10.52GAPDH1.81GAPDH
1.5318S rRNA0.1318S rRNA16.5718S rRNA2.4618S rRNA
Matched pairs of adjacent non-neoplastic and neoplastic gastric tissues
0.14ACTB0.06GAPDH9.24ACTB1.83GAPDH
0.29B2M0.06B2M11.31B2M1.83ACTB
0.41GAPDH0.07ACTB12.52GAPDH2.00B2M
0.5418S rRNA0.1318S rRNA16.8618S rRNA2.6018S rRNA
Normal gastric tissues
0.38GAPDH0.06GAPDH7.3818S rRNA1.82GAPDH
0.41ACTB0.06ACTB11.08GAPDH2.24ACTB
1.07B2M0.07B2M11.46ACTB2.40B2M
2.2418S rRNA0.1118S rRNA13.34B2M3.9118S rRNA
All gastric tissues
0.14ACTB0.07GAPDH10.89ACTB2.04ACTB
0.36B2M0.07B2M13.12B2M2.09B2M
0.69GAPDH0.08ACTB13.2418S rRNA2.12GAPDH
0.9618S rRNA0.1318S rRNA13.43GAPDH3.3418S rRNA
Cell lines
0.53ACTB0.06ACTB2.3618S rRNA1.71ACTB
1.55B2M0.06B2M4.81ACTB2.45B2M
1.7318S rRNA0.1318S rRNA8.60B2M2.6318S rRNA
All gastric tissues + cell lines
0.45ACTB0.09ACTB10.67ACTB2.73B2M
1.11B2M0.09B2M13.02B2M3.32ACTB
1.1918S rRNA0.1618S rRNA13.4118S rRNA3.3818S rRNA