Original Article
Copyright ©2013 Baishideng Publishing Group Co.
World J Gastroenterol. Jun 14, 2013; 19(22): 3404-3414
Published online Jun 14, 2013. doi: 10.3748/wjg.v19.i22.3404
Table 2 Probes and oligonucleotides employed in the study
Primer or probeTarget (phylogenetic group)Sequence (5’-3’) from 16S rRNA geneUsed in FISH-flow cytometry or qPCRRef.
NON338No bacteriaACATCCTACGGGAGGCProbe1[21]
EUB338Most bacteriaGCTGCCTCCCGTAGGAGTProbe1[20]
Erec 482C. coccoides/E.rectale clusterGCTTCTTAGTCARGTACCGProbe1[34]
Clep 1156Clostridium leptum subgroupGTTTTRTCAACGGCAGTCProbe1[35]
Fpra-655F. prausnitziiCGCCTACCTCTGCACTACProbe1[16]
Rint-623R. intestinalis subclusterTTCCAATGCAGTACCGGGProbe1[16]
Ehal-057E. halliii L2-7/E. halliiiTTGCACTGCCACCTACGCProbe1[16]
Cp1Competitor 1GRTTTRTCAYCGGCAGTCCompetitor1[23]
Cp2Competitor 1GTVTTRTCBACGGCAGTCCompetitor1[23]
H1174Helper oligonucleotideTTGACGTCRTCCCCACCTTCCTCCHelper1[23]
H1129Helper oligonucleotideTAGAGTGMTCTTGCGTAHelper1[23]
H1090Helper oligonucleotideGGTTGCGCTCGTTGCGGGACTTAAHelper1[23]
H750Helper oligonucleotideTCGHGCCTCAGCGTCAGHelper1[23]
H122Helper oligonucleotideGAAGGCAGGTTACTCACGCHelper1[23]
Clep FPC. leptum subgroupCGTCAGCTCGTGTCGTGAGATPrimer set2[36]
Clep RPCGTCATCCCCACCTTCCTCC
C.cocci FPC. coccoides subgroupGCCACATTGGGACTGAGAPrimer set2[36]
C.cocci RPGCTTCTTAGTCAGGTACCG
Fpraus FPF. prausnitziiGATGGCCTCGCGTCCGATTAGPrimer set2[37]
Fpraus RPCCGAAGACCTTCTTCCTC
Rint FPRoseburia/E. rectale clusterCKGCAAGTCTGATGTGAAAGPrimer set2This study
Rint RPGCGGGTCCCCGTCAATTCC
Ehal FPE. hallii L2-7/E. hallii membersGCGTAGGTGGCAGTGCAAPrimer set2[38]
Ehal RPGCACCGRAGCCTATACGG