Association of NOD1 and NOD2 genes polymorphisms with Helicobacter pylori related gastric cancer in a Chinese population

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May 7, 2012 (publication date) through May 6, 2024

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World Journal of Gastroenterology

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1007-9327

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Gastroenterol. May 7, 2012; 18(17): 2112-2120
Published online May 7, 2012. doi: 10.3748/wjg.v18.i17.2112

Table 1 Primer details for genotyping of single nucleotide polymorphisms from NOD1 and NOD2 genes

SNP ID	PCR 1st primer	PCR 2nd primer	Amplication length (bp)	Extension sequence primer
rs17159048	ACGTTGGATGTCAAGAGGAGGGTATTAGGC	ACGTTGGATGCTGTGTGCTTGGGCAGTAAC	93	TTTGGCAGTAACAGTGACAAG
rs2907749	ACGTTGGATGGCTGTGAAGAACAGCAAATC	ACGTTGGATGCACACAGCAGGTTGTACCAC	99	GTAGGTTGTACCACATACATCC
rs2075820	ACGTTGGATGAAGCGCAGCAGGAAGGCAAA	ACGTTGGATGACCTGCTCTTCAAGCACTAC	90	CACTCCTGCTACCCAGAGCGGGACCCC
rs7789045	ACGTTGGATGAGCAGACACAGACAGGGTTC	ACGTTGGATGTTGAGATTGCTGACTGGTGG	95	GTGGTCTCTTCCAGC
rs2067085	ACGTTGGATGATCAGGTTGCCGATCTTCAC	ACGTTGGATGCCTTTCCTGAGAACTCTGTG	95	GTGCCTCACCCTCTG
rs1861759	ACGTTGGATGTGACATTTCTCTTGGCTTCC	ACGTTGGATGTGATGTGAAGGAATTCCAGG	100	AAGACACGACACCTTTGGC
rs3135500	ACGTTGGATGGGCCATGTTGTCTATAAGAG	ACGTTGGATGGATGTGTGAAAACTGGTTAA	99	ATTTGTGAAAACTGGTTAATATTTATAG
rs7205423	ACGTTGGATGCTTGGCTCCAGCCCATTTTG	ACGTTGGATGTATGGCTGCTGCAGGAAATG	99	CACAAATTATCCCCTTATAGTC

SNP: Single nucleotide polymorphism; PCR: Polymerase chain reaction.

Citation: Wang P, Zhang L, Jiang JM, Ma D, Tao HX, Yuan SL, Wang YC, Wang LC, Liang H, Zhang ZS, Liu CJ. Association of NOD1 and NOD2 genes polymorphisms with Helicobacter pylori related gastric cancer in a Chinese population. World J Gastroenterol 2012; 18(17): 2112-2120
URL: https://www.wjgnet.com/1007-9327/full/v18/i17/2112.htm
DOI: https://dx.doi.org/10.3748/wjg.v18.i17.2112