Identify lymphatic metastasis-associated genes in mouse hepatocarcinoma cell lines using gene chip

Table 2 Differential biological process profile in cell lines Hca-F vs Hca-P.

Development
Itgb5 gb: NM_010580 1417533_a_at 3.3	Ccnd1 gb: M64403	3.2
Mlf1 gb: NM_010580 1417534_at 3.5	gb: NM_007631	3.1
Morphogenesis
Gja1 gb: BC006894	6.4	Sema3b gb: BB116052	5.1
gb:M63801	7.2	gb:NM_009153	4.7
Tnfaip2	3.4	Tm4sf9	3.9
Igfbp6	3.3	Igfbp4 gb: NM_010517	6.3
Egfr gb: AF275367	6.9	gb: AA119124	4
gb: U03425	3.6	gb: BC019836 1423756_s_at 5.8
Efna1 gb: D38146	5.7	gb: BC019836 1423757_x_at 4.1
gb: BC002046	4.2	Eng	4.5
Cellular process
Cell communication
Cell adhesion
Mcam	4.2	Itgb5 gb: NM_010580 1417533_a_at 3.3
Tm4sf9	3.9	gb: NM_010580 1417534_at 3.5
D7Ertd
45 8e gb: BC013673 1423903_at 3.8		Col8a1	4.9
gb: BB049138 1423904_a_at 4	Eng	4.5
gb: BB049138 1423905_at 3.9	Pcdhb7	4.9
gb: NM_009310 4.2
gb: BC013673 1451160_s_at 4
Cell–cell signaling
Gja1 gb: BC006894	6.4
gb: M63801	7.2
Signal transduction
IL2rg gb: L20048 1416295_a_at 3.3	Efna1 gb: BC002046	4.2
gb: L20048 1416296_at 4.3	gb: D38146	5.7
Itgb5 gb: NM_010580 1417533_a_at 3.3	Egfr gb: AF275367	6.9
gb: NM_010580 1417534_at 3.5	gb: U03425	3.6
Dok1	3.6	Fgf15	5.4
Ptpre	3	Cdc42ep5	4.4
Ramp3	3.6	Sh3bp5	5.5
Lepr	6.7	Ptprr	4.1
Eng	4.5	Ripk3	6.4
F2r	4.5	R75183 gb: BC004774	7
Rrad	3.3	gb: BB324973	5.5
Rab3b	5.6
Cellular physiological process
Cell death
Ripk3	6.4	Nol3	3.3
Cell motility
Tm4sf9	3.9	D7Ertd458e gb: BC013673 1423903_at	3.8
Cnn2	5.2	gb: BB049138 1423904_a_at 4
		gb: BB049138 1423905_at 3.9
		gb: NM_009310 4.2
		gb: BC013673 1451160_s_at 4
Cell growth and/or maintenance
Transport
Tuba4	3.3	Slc38a4 gb: NM_027052	9
Ramp3	3.6	gb: AK003626	3.4
Rab3b	5.6	Cav	5.8
Scn8a	4
Cell organization and biogenesis
Igfbp6	3.3	Igfbp4 gb: NM_010517	6.3
Egfr gb: AF275367	6.9	gb: AA119124	4
gb: U03425	3.6	gb: BC019836 1423756_s_at 5.8
AFFX-18SRNAMur	X00686_M_at 5.1	gb: BC019836 1423757_x_at 4.1
Microtubule-based process
Tua4	3.3
Cytoskeleton organization and biogenesis
Krt1-19	7.4	Krt2-8 gb: M21836	8.6
Tuba4	3.3	gb: NM_031170	4.8
Krt2-7	5.2	Myo1b gb: AI255256	3.4
Krt1-18	5.1	gb: BI080370	3.2
Cell proliferation
Tm4sf9	3.9	Pla2g1b	6.4
Cell cycle
Ccnd1 gb: M64403	3.2	Egfr gb: AF275367	6.9
gb: NM_007631	3.1	gb: U03425	3.6
Axl	4
Regulation of cellular process
Igfbp6	3.3	Igfbp4 gb: NM_010517	6.3
Ramp3	3.6	gb: AA119124	4
		gb: BC019836 1423756_s_at 5.8
		gb: BC019836 1423757_x_at 4.1
Cell differentiation
Ccnd1 gb: M64403	3.2	Mlf1	3.5
gb: NM_007631	3.1
Regulation of biological process
Regulation of cellular process
Igfbp6	3.3	Igfbp4 gb: NM_010517	6.3
Ramp3	3.6	gb: BC019836 1423756_s_at 5.8
Sh3bp5	5.5	gb: BC019836 1423757_x_at 4.1
		gb: AA119124	4
Regulation of physiological process
Gja1 gb: BC006894	6.4	Procr	4.6
gb: M63801	7.2
Behavior
Scn8a	4
Nr1d1		4.6
Physiological process
Metabolism
Pla2g1b	6.4	Pla2g7	4.4
Psmb8	3	2310047E01Rik	3.1
Fbp2	7.1	3.3
Protein metabolism/phosphorus metabolism
A530090O15Rik	3.4	Axl	4
Ccnd1 gb: M64403	3.2	Egfr gb: AF275367	6.9
gb: NM_007631	3.1	gb: U03425	3.6
Krt2-8 gb: M21836	8.6	Mak	3.9
gb: NM_031170	4.8	Ptpn8	5.6
Ptpre	3	Ptprr	4.1
Ripk3	6.4	Sgk2	3.1
Nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Nol3	3.3	Lepr	6.7
Transcription
Fosl1 gb: NM_010235	5	Ankrd1 gb: NM_013468	5.3
gb: U34245	4.4	gb: AK009959	3.6
Nfil3	4.6	Nr1d1	4.6
Regulation of physiological process
Gja1 gb: BC006894	6.4	Procr	4.6
gb: M63801	7.2
Coagulation
Procr	4.6	F2r	4.5
Organismal physiological process
Chi3l3	4.1	Chi3l4	3.4
Csf3	4.7	Daf1	5.9
F2r	4.5	Gja1 gb: BC006894	6.4
IL24	5.9	gb: M63801	7.2
Pla2g7	4.4	Procr	4.6
Mus musculus
transcribed sequences	3.8	Psmb8	3
Response to stimulus
Chi3l3	4.1	Chi3l4	3.4
Csf3	4.7	Daf1	5.9
F2r	4.5	IL24	5.9
Gja1 gb: BC006894	6.4	Krt2-8 gb: NM_031170	4.8
gb: M63801	7.2	gb: M21836	8.6
Pla2g1b	6.4	Pla2g7	4.4
Psmb8	3	Serpinh1	4
Mus musculus transcribed sequences	3.8