Gene expression differences of regenerating rat liver in a short interval successive partial hepatectomy

doi:10.3748/wjg.v10.i18.2680

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Sep 15, 2004 (publication date) through Apr 25, 2024

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World Journal of Gastroenterology

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1007-9327

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Gastroenterol. Sep 15, 2004; 10(18): 2680-2689
Published online Sep 15, 2004. doi: 10.3748/wjg.v10.i18.2680

Table 1 The genes related to liver regeneration altered in 0-36-72-96-144h SISPH (*genes specially altered in SISPH )

No. Gene description	Fold difference	No. Gene description	Fold difference
Unreported genes		^*93 RP24-176A1	2.4
1 AW558171	0.2	94 RP24-347B22	3
2 CG31759-PA	2	95 RP32-28p17	0.4
^*3 CH230-11N5	3.2	96 Adult male liver cDNA	6.4
4 CH230-155H3	0.3	97 DNA segment of Chr 1	3.9
5 CH230-155H3	2.6	98 12 d embryo liver cDNA	2.2
6 CH230-186B23	0.1	99 13 d embryo liver cDNA	0.5
7 CH230-206C20	0.2	Stress response
8 CH230-329A5	0.5	100 Alpha-1 major acute phase protein prepeptide	13.6
9 CH230-372C24	0.1	101 Petaxin	2.6
10 CH230-403C20	0.3	102 Angiotensinogen (Agt)	5.8
^*11 CH230-404C20	2.4	103 Kininogen	8
12 CH230-4L11	4	104 T-kininogen	16.1
13 CH230-7A22	0.1	Glycometabolism
14 Citb585c7	0.3	105 Aldolase B	0.4
^*15 CTD-2328C19	2.5	^*106 C-reactive protein	2.6
^*16 FLJ20356	2.7	107 Glycerol 3-phosphate dehydrogenase (Gpd3)	0.5
17 KIAA1230	2.8	108 Isocitrate dehydrogenase 1 (Idh1)	0.4
18 LOC119392	2.3	^*109 Maize aldolase	0.5
^*19 LOC311304	2	^*110 3-phosphoglycerate dehydrogenase	17.6
^*20 LRRP Aa1-018	2.8	Fatty and stearoyl metabolism
21 LRRP Aa1027	4	111 Malonyl-CoA decarboxylase	0.4
^*22 LRRP Aa1-076	2.6	112 NAD(P) dependent steroid hydrogenase	0.5
^*23 LRRP Aa1-114	2.4	113 P450 cholesterol 7- -hydroxylase (P450 VII)	3
24 LRRP Aa2-020	0.5	114 Prostaglandin D2 synthase 2 (Ptgds2)	2
25 LRRP Aa2-066	0.4	^*115 Retinol dehydrogenase 11	0.5
^*26 LRRP Aa2-111	2.5	116 3-alpha-hydroxysteroid dehydrogenase	0.3
27 LRRP Aa2-174	0.1	Oxidation and reduction response
28 LRRP Aa2-296	3.1	117 Acyl-coA oxidase	0.2
29 LRRP Ab1-021	4.9	118 Alcohol dehydrogenase (ADH)	0.4
30 LRRP Ab1-046	2.9	119 Cytochrom P450 15-beta (Cyp2c12)	0.1
31 LRRP Ab1-108	3	120 Cytochrome b	0.5
32 LRRP Ab1-114	3.4	121 Cytochrome b5 (Cyb5)	0.4
^*33 LRRP Ab1-119	2.1	122 Cytochrome P450	0.2
34 LRRP Ab1-152	0.5	123 Cytochrome P450 (PNCN inducible, Cyp3A1)	0.4
35 LRRP Ab1-216	4.7	124 Cytochrome P450 2E1	0.1
36 LRRP Ab1-331	3	125 Cytochrome P450, 2c39 (Cyp2c39)	0.4
37 LRRP Ab1-334	3.6	^*126 CytochromeP450, 2b19 (Cyp2b15)	0.4
38 LRRP Ab2-001	0.5	127 CytP450 arachidonic acid epoxygenase (cyp 2C23)	0.2
39 LRRP Ab2-001	0.5	128 Flavin-containing monooxygenase 1 (Fmo1)	0.1
40 LRRP Ab2-008	2.1	129 Paraoxonase 1 (Pon1)	0.1
^*41 LRRP Ab2-018	2	^*130 Peroxiredoxin 1 (Prdx1)	0.4
42 LRRP Ab2-034	3	^*131 Plasma selenoprotein P1 (Sepp1)	2.8
^*43 LRRP Ab2-057	0.4	132 Selenium-dependent glutathione peroxidase	0.2
^*44 LRRP Ab2-079	2	Regulation-proteins
^*45 LRRP Ab2-093	2.1	133 II-protein with tetratricopeptide repeats 3	2.3
46 LRRP Ab2-095	4.6	^*134 Glu-Pro dipeptide repeat protein	0.4
47 LRRP Ab2-132	0.4	135 RAKb	0.5
48 LRRP Ab2-143	2	Glycoproteins
49 LRRP Ab2-225	0.3	136 Alpha-1-B glycoprotein (A1bg)	0.1
^*50 LRRP Ab2-255	0.5	137 Fibrinogen, gamma polypeptide (Fgg)	7.2
51 LRRP Ab2-379	3.1	138 Fibronectin 1 (Fn1)	5
^*52 LRRP Ab2-390	2.1	139 Histidine-rich glycoprotein (Hrg)	0.4
53 LRRP Ab2-402	0.4	140 Myelin-associated glycoprotein (L-MAG)	0.3
54 LRRP Ac1-060	2.7	141 TRAM1	2.6
55 LRRP Ac1-163	0.5	142 UDP-glucuronosyltransferase 2B3 (Udpgt)	0.3
56 LRRP Ac1177	0.4	Lipid-proteins
57 LRRP Ac1-233	3.3	143 Apolipoprotein C-I (Apoc1)	0.4
58 LRRP Ac1873	7.1	144 Apolipoprotein C-II	0.3
59 LRRP Ac2-061	3.8	145 Apolipoprotein C-III	0.4
60 LRRP Ac2-125	0.2	146 C57BL/6J	2.2
61 LRRP Ac2-143	4	147 Fatty acid binding protein 1 (Fabp1)	0.2
62 LRRP Ac2-193	3.1	148 Plasma retinol-binding protein (PRBP)	0.5
63 LRRP Ac2-202	4.1	149 Transthyretin-related protein (TTN)	0.2
64 LRRP Ac2-223	2.1	Nucleolar proteins
^*65 LRRP Ac2-256	2.2	150 RNase A family 4	0.4
^*66 LRRP Ac2-282	0.5	Receptors
^*67 LRRP Ac2-300	0.4	151 Cocoa protein	5.5
68 LRRP Ba1-647	3.9	^*152 Golgi SNAP receptor member 1 (Gosr1)	0.4
69 LRRP Bm403207	7.9	153 Nuclear receptor subfamily 0, mem 2 (Nr0b2)	0.2
70 LRRP Cc1-27	0.4	154 Type I interleukin 1 receptor (Il1r1)	6.2
71 LRRP Cc1-8	2.6	Factors
72 LRRP Cc1-9	4.7	155 Angiogenin	0.3
^*73 LRRP Da1-10	2.1	156 Angiopoietin-like 3	0.5
74 LRRP Da1-24	2.8	157 Early growth response factor 1 (Egr1)	2.4
75 LRRP Da1-6	2.9	158 Eukaryotic translation initiation factor 4A1	2.5
^*76 LRRP Da2-19	2.6	159 Insulin-like growth factor I	0.5
^*77 LRRP Da2-35	2.3	160 Neuropeptide Y (Npy)	3.9
^*78 LRRP Da2-4	2.3	Hemoglobins
79 LRRP zbs559	0.4	161 Hemoglobin, alpha 1 (Hba1)	0.3
^*80 MGC38937	2.6	162 Hemoglobin beta chain (Hbb)	0.3
81 RIKEN 1110061A24	3.5	Immunological proteises
82 RIKEN 1300002A08	0.4	163 Achaete-scute complex homolog-like 1 (Ascl1)	0.3
^*83 RIKEN 1500012D08	2.2	164 Complement component 5 (C5)	8.6
^*84 RIKEN 2310045J23	0.5	165 Immunoglobulin C kappa	0.2
85 RIKEN 2810051A14	2	^*166 Fc-gamma receptor class III	5.5
^*86 RIKEN 4930408O21	0.5	167 JE/MCP-1	6.1
87 RP11-281N10	0.5	191 Alpha-1-macroglobulin	3.1
88 RP23-195K1	3.9	192 Contrapsin-like protease inhibitor (CPi-26)	14.1
89 RP23-235O1	0.4	193 Leuserpin-2 (Serpind1)	0.5
90 RP23-35D4	0.5	194 Serine protease inhibitor 1	4.6
91 RP23-417P22	0.4	Phosphorylases
92 RP23-480P21	0.5	^*195 CDK103	2.5
Chaperonins		196 CDK110	0.5
^*168 DnaJ (Hsp40), subfamily B, mem 11 (Dnajb11)	2.6	197 Mss4 protein	3.6
^*169 TCP-1 containing cytosolic chaperonin (CCT)	0.5	^*198 Rho-associated kinase beta (Rock1)	0.5
Cytoskelets		199 Thymidylate kinase (dTMP kinase)	2.8
170 Actin gamma	2.7	Phosphatases
^*171 Actin beta (Actb)	3	200 Pyrophosphatase/phosphodiesterase 1(Enpp1)	4.2
172 Clathrin, heavy polypeptide (Hc) (Cltc)	2.7	201 Phosphatase 1 (GL-subunit)	0.2
173 Karyopherin (importin) alpha 2	0.4	202 Phosphatidylserine-specific phospholipase A1	3
^*174 Mutant beta-actin (beta-actin)	3.4	^*203 Secreted phosphoprotein 1 (Spp1)	2.2
^*175 Ribosomal protein S12 (Rps12)	2.2	^*204 UTP-glucose-1-phosphate	0.4
Marker proteins		Synthases
176 ATP-binding cassette, sub-family C	0.3	^*205 ATPase synthase subunit 6	2.3
^*177 CD164 antigen (Cd164)	0.4	206 Carbamyl phosphate synthetase I	3.3
^*178 CD44 antigen (Cd44)	2.2	^*207 Glutamyl-prolyl-tRNA synthetase (Eprs)	2.6
179 Pregnancy-zone protein (Pzp)	4.7	Transferases
180 Serum amyloid a-5 protein	45.1	208 Carnitine O-octanoyltransferase (Crot)	0.3
181 Subchromosomal transferable fragment 4	0.5	209 Glutathione S-transferase 1 (Mgst1)	0.5
Amino acid enzymes		^*210 Glutathione S-transferase Y(b) subunit	0.4
182 Cytosolic aspartate aminotransferase	5.1	211 Glutathione S-transferase, alpha 1 (Gsta1)	0.1
^*183 Phenylalanine hydroxylase (Pah)	0.4	212 Glutathione S-transferase, type 3 (Yb3) (Gstm3)	0.4
^*184 Tissue-type transglutaminase (Tgm2)	2.8	213 Serine hydroxymethyl transferase 1	2.1
185 2-hydroxyphytanoyl-CoA lyase (Hpcl2)	0.4	214 Sialyltransferase 1 (Siat1)	4.4
Proteolytic enzymes		215 Sulfotransferase K2	0.2
^*186 Alpha/beta hydrolase domain containing protein 1	2.9	216 UDP-glucuronosyltransferase 2, mem 5 (Ugt2b5)	10.4
187 Cathepsin C (Ctsc)	0.4
^*188 Proteasome (macropain subunit, beta type 6 Psmb6)	0.4
Proteinase inhibitors
189 Alpha-1 microglobulin/bikunin (Ambp)	0.4
190 Alpha-2-macroglobulin (A2m)	8.1

Citation: Xu CS, Zhang AS, Han HP, Yuan JY, Chang CF, Li WQ, Yang KJ, Zhao LF, Li YC, Zhang HY, Rahman S, Zhang JB. Gene expression differences of regenerating rat liver in a short interval successive partial hepatectomy. World J Gastroenterol 2004; 10(18): 2680-2689
URL: https://www.wjgnet.com/1007-9327/full/v10/i18/2680.htm
DOI: https://dx.doi.org/10.3748/wjg.v10.i18.2680