©The Author(s) 2024.
World J Virol. Mar 25, 2024; 13(1): 88164
Published online Mar 25, 2024. doi: 10.5501/wjv.v13.i1.88164
Published online Mar 25, 2024. doi: 10.5501/wjv.v13.i1.88164
Table 1 List of different National Center for Biotechnology Information records of different geographic strains for hepatitis C virus, hepatitis B virus, and human immunodeficiency virus 1 that are involved in ClustalW and entropy analyses
| Virus | Taxon ID | Classification | Country of isolation | NCBI accession number |
| HCV | 2847144 (genotype 1a) | Isolate ZS30 | China | KC844049 |
| 11103 (genotype 1b) | Isolate 2000621 | Israel | MT632133 | |
| 31649 (genotype 2) | Subtype 2a, isolate PR63 | China | KF676351 | |
| 356426 (genotype 3) | Subtype 3a | India | GQ275355 | |
| 356418 (genotype 4) | Subtype 4a, strain ED43 | Egypt | GU814265.1 | |
| 33746 (genotype 5) | Subtype 5a | United Kingdom | NC_009826 | |
| 356469 (genotype 6) | Subtype 6k, isolate KM41 | China | DQ278893 | |
| HBV | 489455 (genotype A) | Strain AON | Japan | LC488828 |
| 489460 (genotype B) | Isolate 4265-Viet12 | Viet Nam | LC064379 | |
| 2764122 (genotype C) | Isolate C173334 | Cambodia | LC535933 | |
| 2847137 (genotype D) | Isolate B-H10-Ban | Bangladesh | LC519824 | |
| 2847138 (genotype E) | Isolate Mart-B84 | Martinique | HE974384 | |
| 2847139 (genotype F) | Isolate VHB-PER036 | France | LT935669 | |
| 2847140 (genotype G) | Isolate MEX918M | Mexico | AB625342 | |
| 2847141 (genotype H) | Isolate Itabashi | Japan | LC491577 | |
| 2847142 (genotype I) | Isolate 8290 | Viet Nam | AF241411 | |
| HIV | 11676 (HIV-1) | Isolate 99SE-MP1299 (subtype O) | Senegal | AJ302646 |
| Isolate 5104_SEB_AIM_E3 | United States | MT190832 | ||
| Isolate 01AETH04BKM | Thailand | DQ314732 | ||
| Isolate RBF168 | France | GU111555 | ||
| Clone pCMO2.3 | Cameroon | AY618998 | ||
| Isolate 01ZATM45 (subtype: C) | South Africa | AY228557 | ||
| Isolate 193008 (subtype: AD) | Uganda | MW006063 | ||
| Isolate BI | Belgium | MN486005 | ||
| Isolate 99GR303 | Greece | AY046058 | ||
| Isolate HK002 (subtype: B) | Hong Kong | FJ460499 | ||
| Isolate SE8646 | Sweden | AY352654 | ||
| Isolate 01BRRJUD508 (subtype: F1) | Brazil | MG365771 | ||
| Isolate 04KBH8 (subtype: D) | South Korea | DQ054367 | ||
| Isolate D9451 (subtype: URF) | Japan | MN187301 | ||
| isolate C.IN.05.NIRT333.1 (subtype: C) | India | KF766540 | ||
| Isolate 98UA0116 (subtype: A; group: M) | Ukraine | AF413987 | ||
| Isolate M61 | Spain | DQ854714 | ||
| Isolate MtBs.18 | Russia | MK984159 | ||
| Isolate IIIB | United Kingdom | KJ925006 | ||
| Isolate MBC200 | Australia | AF042100 | ||
| Isolate 60000 (subtype: A1 variant) | Italy | EU861977 | ||
| Isolate TV721 | Canada | HM215249 | ||
| Isolate pXJDC6291-2-6 (subtype: CRF07_BC) | China | KC503852 |
- Citation: Nemr WA, Nashwa RK. Development of a multiplex polymerase chain reaction assay for detection of hepatitis C virus, hepatitis B virus, and human immunodeficiency virus 1. World J Virol 2024; 13(1): 88164
- URL: https://www.wjgnet.com/2220-3249/full/v13/i1/88164.htm
- DOI: https://dx.doi.org/10.5501/wjv.v13.i1.88164