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For: Zinter MS, Dvorak CC, Mayday MY, Iwanaga K, Ly NP, McGarry ME, Church GD, Faricy LE, Rowan CM, Hume JR, Steiner ME, Crawford ED, Langelier C, Kalantar K, Chow ED, Miller S, Shimano K, Melton A, Yanik GA, Sapru A, DeRisi JL. Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children. Clin Infect Dis 2019;68:1847-55. [PMID: 30239621 DOI: 10.1093/cid/ciy802] [Cited by in Crossref: 39] [Cited by in F6Publishing: 36] [Article Influence: 19.5] [Reference Citation Analysis]
Number Citing Articles
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3 Horiba K, Torii Y, Okumura T, Takeuchi S, Suzuki T, Kawada JI, Muramatsu H, Takahashi Y, Ogi T, Ito Y. Next-Generation Sequencing to Detect Pathogens in Pediatric Febrile Neutropenia: A Single-Center Retrospective Study of 112 Cases. Open Forum Infect Dis 2021;8:ofab223. [PMID: 34859110 DOI: 10.1093/ofid/ofab223] [Reference Citation Analysis]
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6 Zinter MS, Versluys AB, Lindemans CA, Mayday MY, Reyes G, Sunshine S, Chan M, Fiorino EK, Cancio M, Prevaes S, Sirota M, Matthay MA, Kharbanda S, Dvorak CC, Boelens JJ, DeRisi JL. Pulmonary microbiome and gene expression signatures differentiate lung function in pediatric hematopoietic cell transplant candidates. Sci Transl Med 2022;14:eabm8646. [PMID: 35263147 DOI: 10.1126/scitranslmed.abm8646] [Reference Citation Analysis]
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9 Zinter MS, Mayday MY, Ryckman KK, Jelliffe-Pawlowski LL, DeRisi JL. Towards precision quantification of contamination in metagenomic sequencing experiments. Microbiome 2019;7:62. [PMID: 30992055 DOI: 10.1186/s40168-019-0678-6] [Cited by in Crossref: 26] [Cited by in F6Publishing: 21] [Article Influence: 8.7] [Reference Citation Analysis]
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12 Hurley C, Zinter MS. Should We Intubate Pediatric Hematopoietic Cell Transplant Patients With Respiratory Failure Sooner? Crit Care Med 2022;50:1163-7. [PMID: 35726983 DOI: 10.1097/CCM.0000000000005548] [Reference Citation Analysis]
13 Li Y, Jiao M, Liu Y, Ren Z, Li A. Application of Metagenomic Next-Generation Sequencing in Mycobacterium tuberculosis Infection. Front Med 2022;9:802719. [DOI: 10.3389/fmed.2022.802719] [Reference Citation Analysis]
14 Bohl JA, Lay S, Chea S, Ahyong V, Parker DM, Gallagher S, Fintzi J, Man S, Ponce A, Sreng S, Kong D, Oliveira F, Kalantar K, Tan M, Fahsbender L, Sheu J, Neff N, Detweiler AM, Yek C, Ly S, Sath R, Huch C, Kry H, Leang R, Huy R, Lon C, Tato CM, DeRisi JL, Manning JE. Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system. Proc Natl Acad Sci U S A 2022;119:e2115285119. [PMID: 35238677 DOI: 10.1073/pnas.2115285119] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
15 Mayday MY, Khan LM, Chow ED, Zinter MS, DeRisi JL. Miniaturization and optimization of 384-well compatible RNA sequencing library preparation. PLoS One 2019;14:e0206194. [PMID: 30629604 DOI: 10.1371/journal.pone.0206194] [Cited by in Crossref: 20] [Cited by in F6Publishing: 13] [Article Influence: 6.7] [Reference Citation Analysis]
16 Yin Q, Li Y, Pan H, Hui T, Yu Z, Wu H, Zhang D, Zheng W, Wang S, Zhou Z, Xu C, Wu W, Tong Y, Wang H, Pan H. Atypical pneumonia caused by Chlamydia psittaci during the COVID-19 pandemic. Int J Infect Dis 2022;122:622-7. [PMID: 35842216 DOI: 10.1016/j.ijid.2022.07.027] [Reference Citation Analysis]
17 Altan E, Dib JC, Gulloso AR, Escribano Juandigua D, Deng X, Bruhn R, Hildebrand K, Freiden P, Yamamoto J, Schultz-Cherry S, Delwart E. Effect of Geographic Isolation on the Nasal Virome of Indigenous Children. J Virol 2019;93:e00681-19. [PMID: 31189707 DOI: 10.1128/JVI.00681-19] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 1.7] [Reference Citation Analysis]
18 Jia X, Hu L, Wu M, Ling Y, Wang W, Lu H, Yuan Z, Yi Z, Zhang X. A streamlined clinical metagenomic sequencing protocol for rapid pathogen identification. Sci Rep 2021;11:4405. [PMID: 33623127 DOI: 10.1038/s41598-021-83812-x] [Reference Citation Analysis]
19 Huang Z, Li W, Lee GC, Fang X, Xing L, Yang B, Lin J, Zhang W. Metagenomic next-generation sequencing of synovial fluid demonstrates high accuracy in prosthetic joint infection diagnostics: mNGS for diagnosing PJI. Bone Joint Res 2020;9:440-9. [PMID: 32864114 DOI: 10.1302/2046-3758.97.BJR-2019-0325.R2] [Cited by in Crossref: 21] [Cited by in F6Publishing: 15] [Article Influence: 10.5] [Reference Citation Analysis]
20 Zhan Y, Xu T, He F, Guan WJ, Li Z, Li S, Xie M, Li X, Chen R, Cheng L, Zhong N, Ye F. Clinical Evaluation of a Metagenomics-Based Assay for Pneumonia Management. Front Microbiol 2021;12:751073. [PMID: 34603275 DOI: 10.3389/fmicb.2021.751073] [Reference Citation Analysis]
21 Xie F, Duan Z, Zeng W, Xie S, Xie M, Fu H, Ye Q, Xu T, Xie L. Clinical metagenomics assessments improve diagnosis and outcomes in community-acquired pneumonia. BMC Infect Dis 2021;21:352. [PMID: 33858378 DOI: 10.1186/s12879-021-06039-1] [Reference Citation Analysis]
22 Peng JM, Du B, Qin HY, Wang Q, Shi Y. Metagenomic next-generation sequencing for the diagnosis of suspected pneumonia in immunocompromised patients. J Infect 2021;82:22-7. [PMID: 33609588 DOI: 10.1016/j.jinf.2021.01.029] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 6.0] [Reference Citation Analysis]
23 Zinter MS, Lindemans CA, Versluys BA, Mayday MY, Sunshine S, Reyes G, Sirota M, Sapru A, Matthay MA, Kharbanda S, Dvorak CC, Boelens JJ, DeRisi JL. The pulmonary metatranscriptome prior to pediatric HCT identifies post-HCT lung injury. Blood 2021;137:1679-89. [PMID: 33512420 DOI: 10.1182/blood.2020009246] [Cited by in Crossref: 3] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
24 Wang Q, Miao Q, Pan J, Jin W, Ma Y, Zhang Y, Yao Y, Su Y, Huang Y, Li B, Wang M, Li N, Cai S, Luo Y, Zhou C, Wu H, Hu B. The clinical value of metagenomic next-generation sequencing in the microbiological diagnosis of skin and soft tissue infections. Int J Infect Dis 2020;100:414-20. [PMID: 32898669 DOI: 10.1016/j.ijid.2020.09.007] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
25 Qin H, Peng J, Liu L, Wu J, Pan L, Huang X, Huang M, Qiu H, Du B; China Critical Care Clinical Trials Group (CCCCTG). A Retrospective Paired Comparison Between Untargeted Next Generation Sequencing and Conventional Microbiology Tests With Wisely Chosen Metagenomic Sequencing Positive Criteria. Front Med (Lausanne) 2021;8:686247. [PMID: 34692715 DOI: 10.3389/fmed.2021.686247] [Reference Citation Analysis]
26 Chen H, Bai X, Gao Y, Liu W, Yao X, Wang J. Profile of Bacteria with ARGs Among Real-World Samples from ICU Admission Patients with Pulmonary Infection Revealed by Metagenomic NGS. Infect Drug Resist 2021;14:4993-5004. [PMID: 34866919 DOI: 10.2147/IDR.S335864] [Reference Citation Analysis]
27 Fan S, Si M, Xu N, Yan M, Pang M, Liu G, Gong J, Wang H. Metagenomic next-generation sequencing-guided antimicrobial treatment versus conventional antimicrobial treatment in early severe community-acquired pneumonia among immunocompromised patients (MATESHIP): A study protocol. Front Microbiol 2022;13:927842. [DOI: 10.3389/fmicb.2022.927842] [Reference Citation Analysis]
28 Li F, Wang Y, Zhang Y, Shi P, Cao L, Su L, Zhu Q, Wang L, Lu R, Tan W, Shen J. Etiology of Severe Pneumonia in Children in Alveolar Lavage Fluid Using a High-Throughput Gene Targeted Amplicon Sequencing Assay. Front Pediatr 2021;9:659164. [PMID: 34249808 DOI: 10.3389/fped.2021.659164] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
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31 Zinter MS, Cheng GS. Acute hypoxaemic respiratory failure in immunocompromised patients: abandon bronchoscopy or make it better? Eur Respir J 2019;54:1901950. [PMID: 31831674 DOI: 10.1183/13993003.01950-2019] [Reference Citation Analysis]
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33 Malczynski M, Zhu A, Zembower T, Qi C. Diagnostic performance of Ion 16S metagenomics kit and Ion reporter metagenomics workflow for bacterial pathogen detection in culture-negative clinical specimens from sterile sources. Diagn Microbiol Infect Dis 2021;101:115451. [PMID: 34237647 DOI: 10.1016/j.diagmicrobio.2021.115451] [Reference Citation Analysis]
34 Sun H, Wang F, Zhang M, Xu X, Li M, Gao W, Wu X, Han H, Wang Q, Yao G, Lou Z, Xia H, Shi Y, Li Q. Diagnostic Value of Bronchoalveolar Lavage Fluid Metagenomic Next-Generation Sequencing in Pneumocystis jirovecii Pneumonia in Non-HIV Immunosuppressed Patients. Front Cell Infect Microbiol 2022;12:872813. [DOI: 10.3389/fcimb.2022.872813] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
35 Sun T, Wu X, Cai Y, Zhai T, Huang L, Zhang Y, Zhan Q. Metagenomic Next-Generation Sequencing for Pathogenic Diagnosis and Antibiotic Management of Severe Community-Acquired Pneumonia in Immunocompromised Adults. Front Cell Infect Microbiol 2021;11:661589. [PMID: 34141628 DOI: 10.3389/fcimb.2021.661589] [Reference Citation Analysis]
36 Yan G, Liu J, Chen W, Chen Y, Cheng Y, Tao J, Cai X, Zhou Y, Wang Y, Wang M, Lu G. Metagenomic Next-Generation Sequencing of Bloodstream Microbial Cell-Free Nucleic Acid in Children With Suspected Sepsis in Pediatric Intensive Care Unit. Front Cell Infect Microbiol 2021;11:665226. [PMID: 34504805 DOI: 10.3389/fcimb.2021.665226] [Reference Citation Analysis]
37 Zinter MS, Dvorak CC, Auletta JJ. How We Treat Fever and Hypotension in Pediatric Hematopoietic Cell Transplant Patients. Front Oncol 2020;10:581447. [PMID: 33042850 DOI: 10.3389/fonc.2020.581447] [Reference Citation Analysis]
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40 Saha S, Ramesh A, Kalantar K, Malaker R, Hasanuzzaman M, Khan LM, Mayday MY, Sajib MSI, Li LM, Langelier C, Rahman H, Crawford ED, Tato CM, Islam M, Juan YF, de Bourcy C, Dimitrov B, Wang J, Tang J, Sheu J, Egger R, De Carvalho TR, Wilson MR, Saha SK, DeRisi JL. Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens. mBio 2019;10:e02877-19. [PMID: 31848287 DOI: 10.1128/mBio.02877-19] [Cited by in Crossref: 26] [Cited by in F6Publishing: 19] [Article Influence: 8.7] [Reference Citation Analysis]
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