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For: Cuervo NS, Guillot S, Romanenkova N, Combiescu M, Aubert-Combiescu A, Seghier M, Caro V, Crainic R, Delpeyroux F. Genomic features of intertypic recombinant sabin poliovirus strains excreted by primary vaccinees. J Virol 2001;75:5740-51. [PMID: 11390576 DOI: 10.1128/JVI.75.13.5740-5751.2001] [Cited by in Crossref: 114] [Cited by in F6Publishing: 63] [Article Influence: 5.7] [Reference Citation Analysis]
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10 Linsuwanon P, Payungporn S, Suwannakarn K, Chieochansin T, Theamboonlers A, Poovorawan Y. Complete coding sequence characterization and comparative analysis of the putative novel human rhinovirus (HRV) species C and B. Virol J 2011;8:5. [PMID: 21214911 DOI: 10.1186/1743-422X-8-5] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 0.9] [Reference Citation Analysis]
11 Mueller JE, Bessaud M, Huang QS, Martinez LC, Barril PA, Morel V, Balanant J, Bocacao J, Hewitt J, Gessner BD, Delpeyroux F, Nates SV. Environmental poliovirus surveillance during oral poliovirus vaccine and inactivated poliovirus vaccine use in Córdoba Province, Argentina. Appl Environ Microbiol 2009;75:1395-401. [PMID: 19124585 DOI: 10.1128/AEM.02201-08] [Cited by in Crossref: 33] [Cited by in F6Publishing: 14] [Article Influence: 2.8] [Reference Citation Analysis]
12 McWilliam Leitch EC, Cabrerizo M, Cardosa J, Harvala H, Ivanova OE, Koike S, Kroes AC, Lukashev A, Perera D, Roivainen M, Susi P, Trallero G, Evans DJ, Simmonds P. The association of recombination events in the founding and emergence of subgenogroup evolutionary lineages of human enterovirus 71. J Virol 2012;86:2676-85. [PMID: 22205739 DOI: 10.1128/JVI.06065-11] [Cited by in Crossref: 89] [Cited by in F6Publishing: 48] [Article Influence: 8.9] [Reference Citation Analysis]
13 Ojosnegros S, Beerenwinkel N, Antal T, Nowak MA, Escarmís C, Domingo E. Competition-colonization dynamics in an RNA virus. Proc Natl Acad Sci U S A 2010;107:2108-12. [PMID: 20080701 DOI: 10.1073/pnas.0909787107] [Cited by in Crossref: 55] [Cited by in F6Publishing: 45] [Article Influence: 5.0] [Reference Citation Analysis]
14 Papaventsis D, Siafakas N, Markoulatos P, Papageorgiou GT, Kourtis C, Chatzichristou E, Economou C, Levidiotou S. Membrane adsorption with direct cell culture combined with reverse transcription-PCR as a fast method for identifying enteroviruses from sewage. Appl Environ Microbiol 2005;71:72-9. [PMID: 15640172 DOI: 10.1128/AEM.71.1.72-79.2005] [Cited by in Crossref: 25] [Cited by in F6Publishing: 9] [Article Influence: 1.6] [Reference Citation Analysis]
15 Boot HJ, Kasteel DT, Buisman AM, Kimman TG. Excretion of wild-type and vaccine-derived poliovirus in the feces of poliovirus receptor-transgenic mice. J Virol 2003;77:6541-5. [PMID: 12743311 DOI: 10.1128/jvi.77.11.6541-6545.2003] [Cited by in Crossref: 11] [Cited by in F6Publishing: 3] [Article Influence: 0.6] [Reference Citation Analysis]
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17 Liu J, Zhang H, Zhao Y, Xia L, Guo C, Yang H, Luo N, He Z, Ma S. Characterization of four vaccine-related polioviruses including two intertypic type 3/type 2 recombinants associated with aseptic encephalitis. Virol J 2016;13:162. [PMID: 27677968 DOI: 10.1186/s12985-016-0615-2] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.4] [Reference Citation Analysis]
18 Aguilera ER, Pfeiffer JK. Strength in numbers: Mechanisms of viral co-infection. Virus Res 2019;265:43-6. [PMID: 30836113 DOI: 10.1016/j.virusres.2019.03.003] [Cited by in Crossref: 10] [Cited by in F6Publishing: 7] [Article Influence: 5.0] [Reference Citation Analysis]
19 Cherkasova EA, Yakovenko ML, Rezapkin GV, Korotkova EA, Ivanova OE, Eremeeva TP, Krasnoproshina LI, Romanenkova NI, Rozaeva NR, Sirota L, Agol VI, Chumakov KM. Spread of vaccine-derived poliovirus from a paralytic case in an immunodeficient child: an insight into the natural evolution of oral polio vaccine. J Virol 2005;79:1062-70. [PMID: 15613335 DOI: 10.1128/JVI.79.2.1062-1070.2005] [Cited by in Crossref: 42] [Cited by in F6Publishing: 21] [Article Influence: 2.6] [Reference Citation Analysis]
20 Simmonds P. Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses. J Virol 2006;80:11124-40. [PMID: 16956935 DOI: 10.1128/JVI.01076-06] [Cited by in Crossref: 149] [Cited by in F6Publishing: 79] [Article Influence: 9.9] [Reference Citation Analysis]
21 McWilliam Leitch EC, Bendig J, Cabrerizo M, Cardosa J, Hyypiä T, Ivanova OE, Kelly A, Kroes AC, Lukashev A, MacAdam A, McMinn P, Roivainen M, Trallero G, Evans DJ, Simmonds P. Transmission networks and population turnover of echovirus 30. J Virol 2009;83:2109-18. [PMID: 19091869 DOI: 10.1128/JVI.02109-08] [Cited by in Crossref: 81] [Cited by in F6Publishing: 44] [Article Influence: 6.2] [Reference Citation Analysis]
22 Simmonds P, Welch J. Frequency and dynamics of recombination within different species of human enteroviruses. J Virol 2006;80:483-93. [PMID: 16352572 DOI: 10.1128/JVI.80.1.483-493.2006] [Cited by in Crossref: 193] [Cited by in F6Publishing: 112] [Article Influence: 13.8] [Reference Citation Analysis]
23 Lowry K, Woodman A, Cook J, Evans DJ. Recombination in enteroviruses is a biphasic replicative process involving the generation of greater-than genome length 'imprecise' intermediates. PLoS Pathog 2014;10:e1004191. [PMID: 24945141 DOI: 10.1371/journal.ppat.1004191] [Cited by in Crossref: 54] [Cited by in F6Publishing: 40] [Article Influence: 7.7] [Reference Citation Analysis]
24 Yang CF, Chen HY, Jorba J, Sun HC, Yang SJ, Lee HC, Huang YC, Lin TY, Chen PJ, Shimizu H, Nishimura Y, Utama A, Pallansch M, Miyamura T, Kew O, Yang JY. Intratypic recombination among lineages of type 1 vaccine-derived poliovirus emerging during chronic infection of an immunodeficient patient. J Virol 2005;79:12623-34. [PMID: 16188964 DOI: 10.1128/JVI.79.20.12623-12634.2005] [Cited by in Crossref: 66] [Cited by in F6Publishing: 31] [Article Influence: 4.1] [Reference Citation Analysis]
25 Erickson AK, Jesudhasan PR, Mayer MJ, Narbad A, Winter SE, Pfeiffer JK. Bacteria Facilitate Enteric Virus Co-infection of Mammalian Cells and Promote Genetic Recombination. Cell Host Microbe 2018;23:77-88.e5. [PMID: 29290575 DOI: 10.1016/j.chom.2017.11.007] [Cited by in Crossref: 88] [Cited by in F6Publishing: 75] [Article Influence: 22.0] [Reference Citation Analysis]
26 Dedepsidis E, Kyriakopoulou Z, Pliaka V, Markoulatos P. Correlation between recombination junctions and RNA secondary structure elements in poliovirus Sabin strains. Virus Genes 2010;41:181-91. [PMID: 20640496 DOI: 10.1007/s11262-010-0512-5] [Cited by in Crossref: 15] [Cited by in F6Publishing: 14] [Article Influence: 1.4] [Reference Citation Analysis]
27 Famulare M, Chang S, Iber J, Zhao K, Adeniji JA, Bukbuk D, Baba M, Behrend M, Burns CC, Oberste MS. Sabin Vaccine Reversion in the Field: a Comprehensive Analysis of Sabin-Like Poliovirus Isolates in Nigeria. J Virol 2016;90:317-31. [PMID: 26468545 DOI: 10.1128/JVI.01532-15] [Cited by in Crossref: 33] [Cited by in F6Publishing: 27] [Article Influence: 5.5] [Reference Citation Analysis]
28 Bouslama L, Nasri D, Chollet L, Belguith K, Bourlet T, Aouni M, Pozzetto B, Pillet S. Natural recombination event within the capsid genomic region leading to a chimeric strain of human enterovirus B. J Virol 2007;81:8944-52. [PMID: 17537864 DOI: 10.1128/JVI.00180-07] [Cited by in Crossref: 28] [Cited by in F6Publishing: 12] [Article Influence: 2.0] [Reference Citation Analysis]
29 Aguilera ER, Erickson AK, Jesudhasan PR, Robinson CM, Pfeiffer JK. Plaques Formed by Mutagenized Viral Populations Have Elevated Coinfection Frequencies. mBio 2017;8:e02020-16. [PMID: 28292984 DOI: 10.1128/mBio.02020-16] [Cited by in Crossref: 36] [Cited by in F6Publishing: 25] [Article Influence: 9.0] [Reference Citation Analysis]
30 Oberste MS, Peñaranda S, Pallansch MA. RNA recombination plays a major role in genomic change during circulation of coxsackie B viruses. J Virol 2004;78:2948-55. [PMID: 14990713 DOI: 10.1128/jvi.78.6.2948-2955.2004] [Cited by in Crossref: 109] [Cited by in F6Publishing: 53] [Article Influence: 6.4] [Reference Citation Analysis]
31 Kyriakopoulou Z, Dedepsidis E, Pliaka V, Tsakogiannis D, Pratti A, Levidiotou-Stefanou S, Markoulatos P. Full-genome sequence analysis of a multirecombinant echovirus 3 strain isolated from sewage in Greece. J Clin Microbiol 2010;48:1513-9. [PMID: 20129960 DOI: 10.1128/JCM.00475-09] [Cited by in Crossref: 11] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
32 Shang P, Misra S, Hause B, Fang Y. A Naturally Occurring Recombinant Enterovirus Expresses a Torovirus Deubiquitinase. J Virol 2017;91:e00450-17. [PMID: 28490584 DOI: 10.1128/JVI.00450-17] [Cited by in Crossref: 26] [Cited by in F6Publishing: 17] [Article Influence: 6.5] [Reference Citation Analysis]
33 Duintjer Tebbens RJ, Pallansch MA, Kim JH, Burns CC, Kew OM, Oberste MS, Diop OM, Wassilak SG, Cochi SL, Thompson KM. Oral poliovirus vaccine evolution and insights relevant to modeling the risks of circulating vaccine-derived polioviruses (cVDPVs). Risk Anal 2013;33:680-702. [PMID: 23470192 DOI: 10.1111/risa.12022] [Cited by in Crossref: 80] [Cited by in F6Publishing: 70] [Article Influence: 10.0] [Reference Citation Analysis]
34 Combelas N, Holmblat B, Joffret ML, Colbère-Garapin F, Delpeyroux F. Recombination between poliovirus and coxsackie A viruses of species C: a model of viral genetic plasticity and emergence. Viruses 2011;3:1460-84. [PMID: 21994791 DOI: 10.3390/v3081460] [Cited by in Crossref: 80] [Cited by in F6Publishing: 70] [Article Influence: 8.0] [Reference Citation Analysis]
35 Cherkasova E, Laassri M, Chizhikov V, Korotkova E, Dragunsky E, Agol VI, Chumakov K. Microarray analysis of evolution of RNA viruses: evidence of circulation of virulent highly divergent vaccine-derived polioviruses. Proc Natl Acad Sci U S A 2003;100:9398-403. [PMID: 12878723 DOI: 10.1073/pnas.1633511100] [Cited by in Crossref: 69] [Cited by in F6Publishing: 63] [Article Influence: 3.8] [Reference Citation Analysis]
36 Gmyl AP, Agol VI. Diverse Mechanisms of RNA Recombination. Mol Biol 2005;39:529-42. [PMID: 32214466 DOI: 10.1007/s11008-005-0069-x] [Cited by in Crossref: 8] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
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38 Romanenkova NI, Guillot S, Rozaeva NR, Crainic R, Bichurina MA, Delpeyroux F. Use of a multiple restriction fragment length polymorphism method for detecting vaccine-derived polioviruses in clinical samples. J Clin Microbiol 2006;44:4077-84. [PMID: 16957032 DOI: 10.1128/JCM.00017-06] [Cited by in Crossref: 11] [Cited by in F6Publishing: 6] [Article Influence: 0.7] [Reference Citation Analysis]
39 Runckel C, Westesson O, Andino R, DeRisi JL. Identification and manipulation of the molecular determinants influencing poliovirus recombination. PLoS Pathog 2013;9:e1003164. [PMID: 23408891 DOI: 10.1371/journal.ppat.1003164] [Cited by in Crossref: 47] [Cited by in F6Publishing: 38] [Article Influence: 5.9] [Reference Citation Analysis]
40 Zhang Y, Zhu S, Yan D, Liu G, Bai R, Wang D, Chen L, Zhu H, An H, Kew O, Xu W. Natural type 3/type 2 intertypic vaccine-related poliovirus recombinants with the first crossover sites within the VP1 capsid coding region. PLoS One 2010;5:e15300. [PMID: 21203565 DOI: 10.1371/journal.pone.0015300] [Cited by in Crossref: 21] [Cited by in F6Publishing: 21] [Article Influence: 1.9] [Reference Citation Analysis]
41 Dimitriou TG, Kyriakopoulou Z, Tsakogiannis D, Fikatas A, Gartzonika C, Levidiotou-Stefanou S, Markoulatos P. Development of a multiplex RT-PCR assay for the identification of recombination types at different genomic regions of vaccine-derived polioviruses. Virus Genes 2016;52:453-62. [PMID: 27098645 DOI: 10.1007/s11262-016-1333-y] [Reference Citation Analysis]
42 Bentley K, Alnaji FG, Woodford L, Jones S, Woodman A, Evans DJ. Imprecise recombinant viruses evolve via a fitness-driven, iterative process of polymerase template-switching events. PLoS Pathog 2021;17:e1009676. [PMID: 34415977 DOI: 10.1371/journal.ppat.1009676] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
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44 Gaunt E, Harvala H, Österback R, Sreenu VB, Thomson E, Waris M, Simmonds P. Genetic characterization of human coxsackievirus A6 variants associated with atypical hand, foot and mouth disease: a potential role of recombination in emergence and pathogenicity. J Gen Virol. 2015;96:1067-1079. [PMID: 25614593 DOI: 10.1099/vir.0.000062] [Cited by in Crossref: 41] [Cited by in F6Publishing: 38] [Article Influence: 6.8] [Reference Citation Analysis]
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46 Zurbriggen S, Tobler K, Abril C, Diedrich S, Ackermann M, Pallansch MA, Metzler A. Isolation of sabin-like polioviruses from wastewater in a country using inactivated polio vaccine. Appl Environ Microbiol 2008;74:5608-14. [PMID: 18641161 DOI: 10.1128/AEM.02764-07] [Cited by in Crossref: 37] [Cited by in F6Publishing: 20] [Article Influence: 2.8] [Reference Citation Analysis]
47 Jegouic S, Joffret ML, Blanchard C, Riquet FB, Perret C, Pelletier I, Colbere-Garapin F, Rakoto-Andrianarivelo M, Delpeyroux F. Recombination between polioviruses and co-circulating Coxsackie A viruses: role in the emergence of pathogenic vaccine-derived polioviruses. PLoS Pathog 2009;5:e1000412. [PMID: 19412342 DOI: 10.1371/journal.ppat.1000412] [Cited by in Crossref: 80] [Cited by in F6Publishing: 75] [Article Influence: 6.7] [Reference Citation Analysis]
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49 De Jesus NH. Epidemics to eradication: the modern history of poliomyelitis. Virol J 2007;4:70. [PMID: 17623069 DOI: 10.1186/1743-422X-4-70] [Cited by in Crossref: 50] [Cited by in F6Publishing: 14] [Article Influence: 3.6] [Reference Citation Analysis]
50 Holmblat B, Jégouic S, Muslin C, Blondel B, Joffret ML, Delpeyroux F. Nonhomologous recombination between defective poliovirus and coxsackievirus genomes suggests a new model of genetic plasticity for picornaviruses. mBio 2014;5:e01119-14. [PMID: 25096874 DOI: 10.1128/mBio.01119-14] [Cited by in Crossref: 35] [Cited by in F6Publishing: 27] [Article Influence: 5.0] [Reference Citation Analysis]
51 Tapparel C, Junier T, Gerlach D, Cordey S, Van Belle S, Perrin L, Zdobnov EM, Kaiser L. New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features. BMC Genomics 2007;8:224. [PMID: 17623054 DOI: 10.1186/1471-2164-8-224] [Cited by in Crossref: 51] [Cited by in F6Publishing: 52] [Article Influence: 3.6] [Reference Citation Analysis]
52 Kitamura K, Shimizu H. The Molecular Evolution of Type 2 Vaccine-Derived Polioviruses in Individuals with Primary Immunodeficiency Diseases. Viruses 2021;13:1407. [PMID: 34372613 DOI: 10.3390/v13071407] [Reference Citation Analysis]
53 Martín J, Samoilovich E, Dunn G, Lackenby A, Feldman E, Heath A, Svirchevskaya E, Cooper G, Yermalovich M, Minor PD. Isolation of an intertypic poliovirus capsid recombinant from a child with vaccine-associated paralytic poliomyelitis. J Virol 2002;76:10921-8. [PMID: 12368335 DOI: 10.1128/jvi.76.21.10921-10928.2002] [Cited by in Crossref: 68] [Cited by in F6Publishing: 27] [Article Influence: 3.6] [Reference Citation Analysis]
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58 Rakoto-Andrianarivelo M, Guillot S, Iber J, Balanant J, Blondel B, Riquet F, Martin J, Kew O, Randriamanalina B, Razafinimpiasa L, Rousset D, Delpeyroux F. Co-circulation and evolution of polioviruses and species C enteroviruses in a district of Madagascar. PLoS Pathog 2007;3:e191. [PMID: 18085822 DOI: 10.1371/journal.ppat.0030191] [Cited by in Crossref: 71] [Cited by in F6Publishing: 66] [Article Influence: 5.5] [Reference Citation Analysis]
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