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For: Tibayrenc M, Ayala FJ. Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa. Proc Natl Acad Sci U S A 2012;109:E3305-13. [PMID: 22949662 DOI: 10.1073/pnas.1212452109] [Cited by in Crossref: 136] [Cited by in F6Publishing: 119] [Article Influence: 13.6] [Reference Citation Analysis]
Number Citing Articles
1 Tibayrenc M, Ayala FJ. Cryptosporidium,Giardia, Cryptococcus, Pneumocystis genetic variability: cryptic biological species or clonal near-clades? PLoS Pathog 2014;10:e1003908. [PMID: 24722548 DOI: 10.1371/journal.ppat.1003908] [Cited by in Crossref: 32] [Cited by in F6Publishing: 29] [Article Influence: 4.0] [Reference Citation Analysis]
2 Vieira A, Silva DN, Várzea V, Paulo OS, Batista D. Novel insights on colonization routes and evolutionary potential of Colletotrichum kahawae, a severe pathogen of Coffea arabica. Mol Plant Pathol 2018;19:2488-501. [PMID: 30073748 DOI: 10.1111/mpp.12726] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
3 Bañuls AL, Thomas F, Renaud F. Of parasites and men. Infect Genet Evol 2013;20:61-70. [PMID: 23954419 DOI: 10.1016/j.meegid.2013.08.005] [Cited by in Crossref: 18] [Cited by in F6Publishing: 8] [Article Influence: 2.0] [Reference Citation Analysis]
4 Damasceno LS, Teixeira MM, Barker BM, Almeida MA, Muniz MM, Pizzini CV, Mesquita JRL, Rodríguez-Arellanes G, Ramírez JA, Vite-Garín T, Leitão TDMJS, Taylor ML, Almeida-Paes R, Zancopé-Oliveira RM. Novel clinical and dual infection by Histoplasma capsulatum genotypes in HIV patients from Northeastern, Brazil. Sci Rep 2019;9:11789. [PMID: 31409874 DOI: 10.1038/s41598-019-48111-6] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 2.3] [Reference Citation Analysis]
5 Ashu EE, Xu J. The roles of sexual and asexual reproduction in the origin and dissemination of strains causing fungal infectious disease outbreaks. Infect Genet Evol 2015;36:199-209. [PMID: 26394109 DOI: 10.1016/j.meegid.2015.09.019] [Cited by in Crossref: 10] [Cited by in F6Publishing: 5] [Article Influence: 1.4] [Reference Citation Analysis]
6 Tibayrenc M, Ayala FJ. Models in parasite and pathogen evolution: Genomic analysis reveals predominant clonality and progressive evolution at all evolutionary scales in parasitic protozoa, yeasts and bacteria. Adv Parasitol 2021;111:75-117. [PMID: 33482977 DOI: 10.1016/bs.apar.2020.12.001] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
7 Vincent BM, Lancaster AK, Scherz-Shouval R, Whitesell L, Lindquist S. Fitness trade-offs restrict the evolution of resistance to amphotericin B. PLoS Biol 2013;11:e1001692. [PMID: 24204207 DOI: 10.1371/journal.pbio.1001692] [Cited by in Crossref: 156] [Cited by in F6Publishing: 141] [Article Influence: 17.3] [Reference Citation Analysis]
8 Berry ASF, Salazar-Sánchez R, Castillo-Neyra R, Borrini-Mayorí K, Chipana-Ramos C, Vargas-Maquera M, Ancca-Juarez J, Náquira-Velarde C, Levy MZ, Brisson D; Chagas Disease Working Group in Arequipa. Sexual reproduction in a natural Trypanosoma cruzi population. PLoS Negl Trop Dis 2019;13:e0007392. [PMID: 31107905 DOI: 10.1371/journal.pntd.0007392] [Cited by in Crossref: 25] [Cited by in F6Publishing: 21] [Article Influence: 8.3] [Reference Citation Analysis]
9 Barratt JLN, Park S, Nascimento FS, Hofstetter J, Plucinski M, Casillas S, Bradbury RS, Arrowood MJ, Qvarnstrom Y, Talundzic E. Genotyping genetically heterogeneous Cyclospora cayetanensis infections to complement epidemiological case linkage. Parasitology 2019;146:1275-83. [PMID: 31148531 DOI: 10.1017/S0031182019000581] [Cited by in Crossref: 12] [Cited by in F6Publishing: 11] [Article Influence: 4.0] [Reference Citation Analysis]
10 Tibayrenc M, Ayala F. Hybridization in Trypanosoma congolense does not challenge the predominant clonal evolution model. A comment on Tihon et al., 2017, Mol. Ecol. Mol Ecol 2018;27:3421-4. [PMID: 30146716 DOI: 10.1111/mec.14714] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 1.3] [Reference Citation Analysis]
11 Pruvost O, Boyer K, Ravigné V, Richard D, Vernière C. Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology of Xanthomonas citri pv. citri at microgeographic scales in a tropical area of Asiatic citrus canker endemicity. Evol Appl 2019;12:1523-38. [PMID: 31462912 DOI: 10.1111/eva.12788] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 2.7] [Reference Citation Analysis]
12 Buscaglia CA, Kissinger JC, Agüero F. Neglected Tropical Diseases in the Post-Genomic Era. Trends in Genetics 2015;31:539-55. [DOI: 10.1016/j.tig.2015.06.002] [Cited by in Crossref: 18] [Cited by in F6Publishing: 14] [Article Influence: 2.6] [Reference Citation Analysis]
13 Zheng SJ, García-Bastidas FA, Li X, Zeng L, Bai T, Xu S, Yin K, Li H, Fu G, Yu Y, Yang L, Nguyen HC, Douangboupha B, Khaing AA, Drenth A, Seidl MF, Meijer HJG, Kema GHJ. New Geographical Insights of the Latest Expansion of Fusarium oxysporum f.sp. cubense Tropical Race 4 Into the Greater Mekong Subregion. Front Plant Sci 2018;9:457. [PMID: 29686692 DOI: 10.3389/fpls.2018.00457] [Cited by in Crossref: 48] [Cited by in F6Publishing: 20] [Article Influence: 12.0] [Reference Citation Analysis]
14 Vernière C, Bui Thi Ngoc L, Jarne P, Ravigné V, Guérin F, Gagnevin L, Le Mai N, Chau NM, Pruvost O. Highly polymorphic markers reveal the establishment of an invasive lineage of the citrus bacterial pathogen Xanthomonas citri pv. citri in its area of origin. Environ Microbiol 2014;16:2226-37. [PMID: 24373118 DOI: 10.1111/1462-2920.12369] [Cited by in Crossref: 19] [Cited by in F6Publishing: 17] [Article Influence: 2.4] [Reference Citation Analysis]
15 Roman F, Iñiguez AM, Yeo M, Jansen AM. Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids. Parasit Vectors 2018;11:107. [PMID: 29471851 DOI: 10.1186/s13071-018-2696-9] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.5] [Reference Citation Analysis]
16 McTaggart AR, James TY, Shivas RG, Drenth A, Wingfield BD, Summerell BA, Duong TA. Population genomics reveals historical and ongoing recombination in the Fusarium oxysporum species complex. Stud Mycol 2021;99:100132. [PMID: 35027981 DOI: 10.1016/j.simyco.2021.100132] [Reference Citation Analysis]
17 Marcelletti S, Scortichini M. Some strains that have converged to infect Prunus spp. trees are members of distinct Pseudomonas syringae genomospecies and ecotypes as revealed by in silico genomic comparison. Arch Microbiol 2019;201:67-80. [PMID: 30229267 DOI: 10.1007/s00203-018-1573-4] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
18 Tibayrenc M, Ayala FJ. Is Predominant Clonal Evolution a Common Evolutionary Adaptation to Parasitism in Pathogenic Parasitic Protozoa, Fungi, Bacteria, and Viruses? Adv Parasitol 2017;97:243-325. [PMID: 28325372 DOI: 10.1016/bs.apar.2016.08.007] [Cited by in Crossref: 16] [Cited by in F6Publishing: 15] [Article Influence: 2.7] [Reference Citation Analysis]
19 Tibayrenc M, Ayala FJ. Response to Rougeron et al.: Leishmania population genetics: clonality, selfing and aneuploidy. Trends in Parasitology 2015;31:279-80. [DOI: 10.1016/j.pt.2015.04.002] [Cited by in Crossref: 3] [Article Influence: 0.4] [Reference Citation Analysis]
20 Robin C, Andanson A, Saint-Jean G, Fabreguettes O, Dutech C. What was old is new again: thermal adaptation within clonal lineages during range expansion in a fungal pathogen. Mol Ecol 2017;26:1952-63. [PMID: 28141894 DOI: 10.1111/mec.14039] [Cited by in Crossref: 25] [Cited by in F6Publishing: 15] [Article Influence: 5.0] [Reference Citation Analysis]
21 Flegontov P, Butenko A, Firsov S, Kraeva N, Eliáš M, Field MC, Filatov D, Flegontova O, Gerasimov ES, Hlaváčová J, Ishemgulova A, Jackson AP, Kelly S, Kostygov AY, Logacheva MD, Maslov DA, Opperdoes FR, O'Reilly A, Sádlová J, Ševčíková T, Venkatesh D, Vlček Č, Volf P, Votýpka J, Záhonová K, Yurchenko V, Lukeš J. Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania. Sci Rep 2016;6:23704. [PMID: 27021793 DOI: 10.1038/srep23704] [Cited by in Crossref: 55] [Cited by in F6Publishing: 52] [Article Influence: 9.2] [Reference Citation Analysis]
22 Tibayrenc M, Ayala FJ. Relevant units of analysis for applied and basic research dealing with neglected transmissible diseases: The predominant clonal evolution model of pathogenic microorganisms. PLoS Negl Trop Dis 2017;11:e0005293. [PMID: 28448491 DOI: 10.1371/journal.pntd.0005293] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 1.2] [Reference Citation Analysis]
23 Krafsur ES, Maudlin I. Tsetse fly evolution, genetics and the trypanosomiases - A review. Infect Genet Evol 2018;64:185-206. [PMID: 29885477 DOI: 10.1016/j.meegid.2018.05.033] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 2.3] [Reference Citation Analysis]
24 Susi H, Burdon JJ, Thrall PH, Nemri A, Barrett LG. Genetic analysis reveals long-standing population differentiation and high diversity in the rust pathogen Melampsora lini. PLoS Pathog 2020;16:e1008731. [PMID: 32810177 DOI: 10.1371/journal.ppat.1008731] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
25 Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren van Themaat E, Paape T, Shimizu KK, Keller B. The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat Genet 2013;45:1092-6. [PMID: 23852167 DOI: 10.1038/ng.2704] [Cited by in Crossref: 165] [Cited by in F6Publishing: 116] [Article Influence: 18.3] [Reference Citation Analysis]
26 Sagastume S, Martín-Hernández R, Higes M, Henriques-Gil N. Genotype diversity in the honey bee parasite Nosema ceranae: multi-strain isolates, cryptic sex or both? BMC Evol Biol 2016;16:216. [PMID: 27756211 DOI: 10.1186/s12862-016-0797-7] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 1.2] [Reference Citation Analysis]
27 Cissé OH, Hauser PM. Genomics and evolution of Pneumocystis species. Infect Genet Evol 2018;65:308-20. [PMID: 30138710 DOI: 10.1016/j.meegid.2018.08.015] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 1.8] [Reference Citation Analysis]
28 Machin A, Telleria J, Brizard JP, Demettre E, Séveno M, Ayala FJ, Tibayrenc M. Trypanosoma cruzi: gene expression surveyed by proteomic analysis reveals interaction between different genotypes in mixed in vitro cultures. PLoS One 2014;9:e95442. [PMID: 24748035 DOI: 10.1371/journal.pone.0095442] [Cited by in Crossref: 8] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
29 Fraga J, Fernández-Calienes A, Montalvo AM, Maes I, Deborggraeve S, Büscher P, Dujardin JC, Van der Auwera G. Phylogenetic analysis of the Trypanosoma genus based on the heat-shock protein 70 gene. Infect Genet Evol 2016;43:165-72. [PMID: 27180897 DOI: 10.1016/j.meegid.2016.05.016] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.3] [Reference Citation Analysis]
30 Konczal M, Przesmycka KJ, Mohammed RS, Phillips KP, Camara F, Chmielewski S, Hahn C, Guigo R, Cable J, Radwan J. Gene duplications, divergence and recombination shape adaptive evolution of the fish ectoparasite Gyrodactylus bullatarudis. Mol Ecol 2020;29:1494-507. [PMID: 32222008 DOI: 10.1111/mec.15421] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
31 Xie SC, Zou Y, Li Z, Yang JF, Zhu XQ, Zou FC. Molecular Detection and Genotyping of Enterocytozoon bieneusi in Black Goats (Capra hircus) in Yunnan Province, Southwestern China. Animals (Basel) 2021;11:3387. [PMID: 34944164 DOI: 10.3390/ani11123387] [Reference Citation Analysis]
32 Sun X, Gostinčar C, Fang C, Zajc J, Hou Y, Song Z, Gunde-Cimerman N. Genomic Evidence of Recombination in the Basidiomycete Wallemia mellicola. Genes (Basel) 2019;10:E427. [PMID: 31167502 DOI: 10.3390/genes10060427] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 1.7] [Reference Citation Analysis]
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34 Stoeckel S, Porro B, Arnaud-Haond S. The discernible and hidden effects of clonality on the genotypic and genetic states of populations: Improving our estimation of clonal rates. Mol Ecol Resour 2021;21:1068-84. [PMID: 33386695 DOI: 10.1111/1755-0998.13316] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
35 Becheler R, Masson J, Arnaud-haond S, Halkett F, Mariette S, Guillemin M, Valero M, Destombe C, Stoeckel S. ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. Mol Ecol Resour 2017;17:e251-67. [DOI: 10.1111/1755-0998.12698] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 2.0] [Reference Citation Analysis]
36 Skuce R, Breadon E, Allen A, Milne G, McCormick C, Hughes C, Rutherford D, Smith G, Thompson S, Graham J, Harwood R, Byrne A. Longitudinal dynamics of herd-level Mycobacterium bovis MLVA type surveillance in cattle in Northern Ireland 2003-2016. Infect Genet Evol 2020;79:104131. [PMID: 31786341 DOI: 10.1016/j.meegid.2019.104131] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 1.3] [Reference Citation Analysis]
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38 Falk BG, Glor RE, Perkins SL. Clonal reproduction shapes evolution in the lizard malaria parasite Plasmodium floridense. Evolution 2015;69:1584-96. [PMID: 25959003 DOI: 10.1111/evo.12683] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 1.6] [Reference Citation Analysis]
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52 Rodrigues AM, de Melo Teixeira M, de Hoog GS, Schubach TM, Pereira SA, Fernandes GF, Bezerra LM, Felipe MS, de Camargo ZP. Phylogenetic analysis reveals a high prevalence of Sporothrix brasiliensis in feline sporotrichosis outbreaks. PLoS Negl Trop Dis 2013;7:e2281. [PMID: 23818999 DOI: 10.1371/journal.pntd.0002281] [Cited by in Crossref: 149] [Cited by in F6Publishing: 138] [Article Influence: 16.6] [Reference Citation Analysis]
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