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For: Simon-Loriere E, Holmes EC. Why do RNA viruses recombine? Nat Rev Microbiol 2011;9:617-26. [PMID: 21725337 DOI: 10.1038/nrmicro2614] [Cited by in Crossref: 331] [Cited by in F6Publishing: 291] [Article Influence: 30.1] [Reference Citation Analysis]
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4 Jaworski E, Routh A. Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective-interfering RNAs in Flock House virus. PLoS Pathog 2017;13:e1006365. [PMID: 28475646 DOI: 10.1371/journal.ppat.1006365] [Cited by in Crossref: 37] [Cited by in F6Publishing: 30] [Article Influence: 7.4] [Reference Citation Analysis]
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7 Chisholm PJ, Busch JW, Crowder DW. Effects of life history and ecology on virus evolutionary potential. Virus Res 2019;265:1-9. [PMID: 30831177 DOI: 10.1016/j.virusres.2019.02.018] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.7] [Reference Citation Analysis]
8 Aris-Brosou S, Parent L, Ibeh N. Viral Long-Term Evolutionary Strategies Favor Stability over Proliferation. Viruses 2019;11:E677. [PMID: 31344814 DOI: 10.3390/v11080677] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
9 Filomatori CV, Bardossy ES, Merwaiss F, Suzuki Y, Henrion A, Saleh MC, Alvarez DE. RNA recombination at Chikungunya virus 3'UTR as an evolutionary mechanism that provides adaptability. PLoS Pathog 2019;15:e1007706. [PMID: 30986247 DOI: 10.1371/journal.ppat.1007706] [Cited by in Crossref: 21] [Cited by in F6Publishing: 16] [Article Influence: 7.0] [Reference Citation Analysis]
10 Ecale Zhou CL. S2M: A Stochastic Simulation Model of Poliovirus Genetic State Transition. Bioinform Biol Insights 2016;10:81-95. [PMID: 27385911 DOI: 10.4137/BBI.S38194] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
11 Rao S, Chen X, Qiu S, Peng J, Zheng H, Lu Y, Wu G, Chen J, Jiang W, Zhang Y, Yan F. Identification of Two New Isolates of Chilli veinal mottle virus From Different Regions in China: Molecular Diversity, Phylogenetic and Recombination Analysis. Front Microbiol 2020;11:616171. [PMID: 33424819 DOI: 10.3389/fmicb.2020.616171] [Reference Citation Analysis]
12 Bruner KM, Hosmane NN, Siliciano RF. Towards an HIV-1 cure: measuring the latent reservoir. Trends Microbiol. 2015;23:192-203. [PMID: 25747663 DOI: 10.1016/j.tim.2015.01.013] [Cited by in Crossref: 146] [Cited by in F6Publishing: 141] [Article Influence: 20.9] [Reference Citation Analysis]
13 Tan S, Banwell MG, Ye WC, Lan P, White LV. The Inhibition of RNA Viruses by Amaryllidaceae Alkaloids: Opportunities for the Development of Broad-Spectrum Anti-Coronavirus Drugs. Chem Asian J 2022;:e202101215. [PMID: 35032358 DOI: 10.1002/asia.202101215] [Reference Citation Analysis]
14 Ramazzotti D, Angaroni F, Maspero D, Gambacorti-Passerini C, Antoniotti M, Graudenzi A, Piazza R. VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples. Patterns (N Y) 2021;2:100212. [PMID: 33728416 DOI: 10.1016/j.patter.2021.100212] [Cited by in Crossref: 7] [Cited by in F6Publishing: 2] [Article Influence: 7.0] [Reference Citation Analysis]
15 Fu Y, Li S, Zhang Z, Man S, Li X, Zhang W, Zhang C, Cheng X. Phylogeographic analysis of severe fever with thrombocytopenia syndrome virus from Zhoushan Islands, China: implication for transmission across the ocean. Sci Rep 2016;6:19563. [PMID: 26806841 DOI: 10.1038/srep19563] [Cited by in Crossref: 32] [Cited by in F6Publishing: 29] [Article Influence: 5.3] [Reference Citation Analysis]
16 Rethwilm A, Bodem J. Evolution of foamy viruses: the most ancient of all retroviruses. Viruses 2013;5:2349-74. [PMID: 24072062 DOI: 10.3390/v5102349] [Cited by in Crossref: 37] [Cited by in F6Publishing: 34] [Article Influence: 4.1] [Reference Citation Analysis]
17 Tibayrenc M, Ayala FJ. Is Predominant Clonal Evolution a Common Evolutionary Adaptation to Parasitism in Pathogenic Parasitic Protozoa, Fungi, Bacteria, and Viruses? Adv Parasitol 2017;97:243-325. [PMID: 28325372 DOI: 10.1016/bs.apar.2016.08.007] [Cited by in Crossref: 16] [Cited by in F6Publishing: 15] [Article Influence: 2.7] [Reference Citation Analysis]
18 Meier-Kolthoff JP, Uchiyama J, Yahara H, Paez-Espino D, Yahara K. Investigation of recombination-intense viral groups and their genes in the Earth's virome. Sci Rep 2018;8:11496. [PMID: 30065291 DOI: 10.1038/s41598-018-29272-2] [Cited by in Crossref: 9] [Cited by in F6Publishing: 5] [Article Influence: 2.3] [Reference Citation Analysis]
19 Varsani A, Lefeuvre P, Roumagnac P, Martin D. Notes on recombination and reassortment in multipartite/segmented viruses. Curr Opin Virol 2018;33:156-66. [PMID: 30237098 DOI: 10.1016/j.coviro.2018.08.013] [Cited by in Crossref: 20] [Cited by in F6Publishing: 12] [Article Influence: 5.0] [Reference Citation Analysis]
20 Saeng-Chuto K, Jermsutjarit P, Stott CJ, Vui DT, Tantituvanont A, Nilubol D. Retrospective study, full-length genome characterization and evaluation of viral infectivity and pathogenicity of chimeric porcine deltacoronavirus detected in Vietnam. Transbound Emerg Dis 2020;67:183-98. [PMID: 31469947 DOI: 10.1111/tbed.13339] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
21 Wallin R, van Iersel L, Kelk S, Stougie L. Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2. BMC Ecol Evol 2021;21:220. [PMID: 34876022 DOI: 10.1186/s12862-021-01946-y] [Reference Citation Analysis]
22 Lagan Tregaskis P, Devaney R, Smyth VJ. The First Whole Genome Sequence and Characterisation of Avian Nephritis Virus Genotype 3. Viruses 2021;13:235. [PMID: 33546203 DOI: 10.3390/v13020235] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
23 Mosley YC, Wu CC, Lin TL. A free VP3 C-terminus is essential for the replication of infectious bursal disease virus. Virus Res 2017;232:77-9. [PMID: 28189698 DOI: 10.1016/j.virusres.2017.02.004] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.6] [Reference Citation Analysis]
24 Forsdyke DR. Implications of HIV RNA structure for recombination, speciation, and the neutralism-selectionism controversy. Microbes Infect 2014;16:96-103. [PMID: 24211872 DOI: 10.1016/j.micinf.2013.10.017] [Cited by in Crossref: 12] [Cited by in F6Publishing: 3] [Article Influence: 1.3] [Reference Citation Analysis]
25 Ma T, Xu L, Ren M, Shen J, Han Z, Sun J, Zhao Y, Liu S. Novel genotype of infectious bronchitis virus isolated in China. Vet Microbiol 2019;230:178-86. [PMID: 30827386 DOI: 10.1016/j.vetmic.2019.01.020] [Cited by in Crossref: 26] [Cited by in F6Publishing: 25] [Article Influence: 8.7] [Reference Citation Analysis]
26 Shibata T, Iwasaki W, Hirota K. The intrinsic ability of double-stranded DNA to carry out D-loop and R-loop formation. Comput Struct Biotechnol J 2020;18:3350-60. [PMID: 33294131 DOI: 10.1016/j.csbj.2020.10.025] [Reference Citation Analysis]
27 Tohma K, Lepore CJ, Martinez M, Degiuseppe JI, Khamrin P, Saito M, Mayta H, Nwaba AUA, Ford-Siltz LA, Green KY, Galeano ME, Zimic M, Stupka JA, Gilman RH, Maneekarn N, Ushijima H, Parra GI. Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints. PLoS Pathog 2021;17:e1009744. [PMID: 34255807 DOI: 10.1371/journal.ppat.1009744] [Cited by in Crossref: 1] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
28 Risser J, Ackerman M, Evelsizer R, Wu S, Kwon B, Hammer JM. Porcine reproductive and respiratory syndrome virus genetic variability a management and diagnostic dilemma. Virol J 2021;18:206. [PMID: 34663367 DOI: 10.1186/s12985-021-01675-0] [Reference Citation Analysis]
29 Lv Q, Zhang H, Tian L, Zhang R, Zhang Z, Li J, Tong Y, Fan H, Carr MJ, Shi W. Novel sub-lineages, recombinants and reassortants of severe fever with thrombocytopenia syndrome virus. Ticks Tick Borne Dis 2017;8:385-90. [PMID: 28117273 DOI: 10.1016/j.ttbdis.2016.12.015] [Cited by in Crossref: 12] [Cited by in F6Publishing: 9] [Article Influence: 2.4] [Reference Citation Analysis]
30 Wang L, Hou J, Gao L, Guo XK, Yu Z, Zhu Y, Liu Y, Tang J, Zhang H, Feng WH. Attenuation of highly pathogenic porcine reproductive and respiratory syndrome virus by inserting an additional transcription unit. Vaccine 2014;32:5740-8. [PMID: 25171845 DOI: 10.1016/j.vaccine.2014.08.036] [Cited by in Crossref: 12] [Cited by in F6Publishing: 13] [Article Influence: 1.5] [Reference Citation Analysis]
31 Golden M, Muhire BM, Semegni Y, Martin DP. Patterns of recombination in HIV-1M are influenced by selection disfavouring the survival of recombinants with disrupted genomic RNA and protein structures. PLoS One 2014;9:e100400. [PMID: 24936864 DOI: 10.1371/journal.pone.0100400] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 1.1] [Reference Citation Analysis]
32 Mattenberger F, Vila-Nistal M, Geller R. Increased RNA virus population diversity improves adaptability. Sci Rep 2021;11:6824. [PMID: 33767337 DOI: 10.1038/s41598-021-86375-z] [Reference Citation Analysis]
33 Hoxie I, Dennehy JJ. Intragenic recombination influences rotavirus diversity and evolution. Virus Evol 2020;6:vez059. [PMID: 31949920 DOI: 10.1093/ve/vez059] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 4.0] [Reference Citation Analysis]
34 Guo TC, Johansson DX, Haugland Ø, Liljeström P, Evensen Ø. A 6K-deletion variant of salmonid alphavirus is non-viable but can be rescued through RNA recombination. PLoS One 2014;9:e100184. [PMID: 25009976 DOI: 10.1371/journal.pone.0100184] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.0] [Reference Citation Analysis]
35 Inderbitzin A, Kok YL, Jörimann L, Kelley A, Neumann K, Heinzer D, Cathomen T, Metzner KJ. HIV-1 promoter is gradually silenced when integrated into BACH2 in Jurkat T-cells. PeerJ 2020;8:e10321. [PMID: 33282555 DOI: 10.7717/peerj.10321] [Reference Citation Analysis]
36 Elena SF. RNA virus genetic robustness: possible causes and some consequences. Curr Opin Virol 2012;2:525-30. [PMID: 22818515 DOI: 10.1016/j.coviro.2012.06.008] [Cited by in Crossref: 30] [Cited by in F6Publishing: 26] [Article Influence: 3.0] [Reference Citation Analysis]
37 Tell JG, Coller BG, Dubey SA, Jenal U, Lapps W, Wang L, Wolf J. Environmental Risk Assessment for rVSVΔG-ZEBOV-GP, a Genetically Modified Live Vaccine for Ebola Virus Disease. Vaccines (Basel) 2020;8:E779. [PMID: 33352786 DOI: 10.3390/vaccines8040779] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
38 Yang Y, Gaspard G, McMullen N, Duncan R. Polycistronic Genome Segment Evolution and Gain and Loss of FAST Protein Function during Fusogenic Orthoreovirus Speciation. Viruses 2020;12:E702. [PMID: 32610593 DOI: 10.3390/v12070702] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
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40 Poirier EZ, Goic B, Tomé-Poderti L, Frangeul L, Boussier J, Gausson V, Blanc H, Vallet T, Loyd H, Levi LI, Lanciano S, Baron C, Merkling SH, Lambrechts L, Mirouze M, Carpenter S, Vignuzzi M, Saleh MC. Dicer-2-Dependent Generation of Viral DNA from Defective Genomes of RNA Viruses Modulates Antiviral Immunity in Insects. Cell Host Microbe 2018;23:353-365.e8. [PMID: 29503180 DOI: 10.1016/j.chom.2018.02.001] [Cited by in Crossref: 81] [Cited by in F6Publishing: 71] [Article Influence: 20.3] [Reference Citation Analysis]
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43 Simmonds P. Methods for virus classification and the challenge of incorporating metagenomic sequence data. Journal of General Virology 2015;96:1193-206. [DOI: 10.1099/vir.0.000016] [Cited by in Crossref: 40] [Cited by in F6Publishing: 12] [Article Influence: 5.7] [Reference Citation Analysis]
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46 Wei H, Khamrin P, Kumthip K, Yodmeeklin A, Maneekarn N. Emergence of Multiple Novel Inter-Genotype Recombinant Strains of Human Astroviruses Detected in Pediatric Patients With Acute Gastroenteritis in Thailand. Front Microbiol 2021;12:789636. [PMID: 34966371 DOI: 10.3389/fmicb.2021.789636] [Reference Citation Analysis]
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60 Fahmi M, Kharisma VD, Ansori ANM, Ito M. Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics Approach. Adv Exp Med Biol 2021;1318:839-57. [PMID: 33973215 DOI: 10.1007/978-3-030-63761-3_47] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
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