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For: Kono N, Arakawa K, Tomita M. Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes. BMC Genomics 2011;12:19. [PMID: 21223577 DOI: 10.1186/1471-2164-12-19] [Cited by in Crossref: 52] [Cited by in F6Publishing: 41] [Article Influence: 4.7] [Reference Citation Analysis]
Number Citing Articles
1 Kono N, Arakawa K, Tomita M. Validation of bacterial replication termination models using simulation of genomic mutations. PLoS One 2012;7:e34526. [PMID: 22509315 DOI: 10.1371/journal.pone.0034526] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 1.0] [Reference Citation Analysis]
2 Rebets Y, Tokovenko B, Lushchyk I, Rückert C, Zaburannyi N, Bechthold A, Kalinowski J, Luzhetskyy A. Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae. BMC Genomics 2014;15:885. [PMID: 25301375 DOI: 10.1186/1471-2164-15-885] [Cited by in Crossref: 18] [Cited by in F6Publishing: 17] [Article Influence: 2.3] [Reference Citation Analysis]
3 Cossu M, Da Cunha V, Toffano-Nioche C, Forterre P, Oberto J. Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes. Biochimie 2015;118:313-21. [PMID: 26166067 DOI: 10.1016/j.biochi.2015.07.008] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 1.6] [Reference Citation Analysis]
4 Farrokhi A, Liu H, Szatmari G. Characterization of the Chromosome Dimer Resolution Site in Caulobacter crescentus. J Bacteriol 2019;201:e00391-19. [PMID: 31548274 DOI: 10.1128/JB.00391-19] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
5 Bischerour J, Spangenberg C, Barre FX. Holliday junction affinity of the base excision repair factor Endo III contributes to cholera toxin phage integration. EMBO J 2012;31:3757-67. [PMID: 22863778 DOI: 10.1038/emboj.2012.219] [Cited by in Crossref: 14] [Cited by in F6Publishing: 12] [Article Influence: 1.4] [Reference Citation Analysis]
6 Debowski AW, Carnoy C, Verbrugghe P, Nilsson HO, Gauntlett JC, Fulurija A, Camilleri T, Berg DE, Marshall BJ, Benghezal M. Xer recombinase and genome integrity in Helicobacter pylori, a pathogen without topoisomerase IV. PLoS One 2012;7:e33310. [PMID: 22511919 DOI: 10.1371/journal.pone.0033310] [Cited by in Crossref: 20] [Cited by in F6Publishing: 16] [Article Influence: 2.0] [Reference Citation Analysis]
7 Lato DF, Golding GB. Spatial Patterns of Gene Expression in Bacterial Genomes. J Mol Evol 2020;88:510-20. [PMID: 32506154 DOI: 10.1007/s00239-020-09951-3] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
8 Midonet C, Miele S, Paly E, Guerois R, Barre FX. The TLCΦ satellite phage harbors a Xer recombination activation factor. Proc Natl Acad Sci U S A 2019;116:18391-6. [PMID: 31420511 DOI: 10.1073/pnas.1902905116] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.7] [Reference Citation Analysis]
9 Wang H, Beier N, Boedeker C, Sztajer H, Henke P, Neumann-Schaal M, Mansky J, Rohde M, Overmann J, Petersen J, Klawonn F, Kucklick M, Engelmann S, Tomasch J, Wagner-Döbler I. Dinoroseobacter shibae Outer Membrane Vesicles Are Enriched for the Chromosome Dimer Resolution Site dif. mSystems 2021;6:e00693-20. [PMID: 33436507 DOI: 10.1128/mSystems.00693-20] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
10 Pan L, Huang T, Yang Z, Tang L, Cheng Y, Wang J, Ma X, Zhang X. EST-SSR marker characterization based on RNA-sequencing of Lolium multiflorum and cross transferability to related species. Mol Breeding 2018;38. [DOI: 10.1007/s11032-018-0775-4] [Cited by in Crossref: 10] [Cited by in F6Publishing: 2] [Article Influence: 2.5] [Reference Citation Analysis]
11 Lato DF, Golding GB. The Location of Substitutions and Bacterial Genome Arrangements. Genome Biol Evol 2021;13:evaa260. [PMID: 33320172 DOI: 10.1093/gbe/evaa260] [Reference Citation Analysis]
12 Arakawa K, Tomita M. Measures of compositional strand bias related to replication machinery and its applications. Curr Genomics 2012;13:4-15. [PMID: 22942671 DOI: 10.2174/138920212799034749] [Cited by in Crossref: 16] [Cited by in F6Publishing: 12] [Article Influence: 1.6] [Reference Citation Analysis]
13 Weigand MR, Peng Y, Batra D, Burroughs M, Davis JK, Knipe K, Loparev VN, Johnson T, Juieng P, Rowe LA, Sheth M, Tang K, Unoarumhi Y, Williams MM, Tondella ML. Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens. mSystems 2019;4:e00702-19. [PMID: 31744907 DOI: 10.1128/mSystems.00702-19] [Cited by in Crossref: 9] [Cited by in F6Publishing: 4] [Article Influence: 3.0] [Reference Citation Analysis]
14 Goodall DJ, Jameson KH, Hawkins M, Rudolph CJ. A Fork Trap in the Chromosomal Termination Area Is Highly Conserved across All Escherichia coli Phylogenetic Groups. Int J Mol Sci 2021;22:7928. [PMID: 34360694 DOI: 10.3390/ijms22157928] [Reference Citation Analysis]
15 Smyshlyaev G, Bateman A, Barabas O. Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes. Mol Syst Biol 2021;17:e9880. [PMID: 34018328 DOI: 10.15252/msb.20209880] [Reference Citation Analysis]
16 Castillo F, Benmohamed A, Szatmari G. Xer Site Specific Recombination: Double and Single Recombinase Systems. Front Microbiol 2017;8:453. [PMID: 28373867 DOI: 10.3389/fmicb.2017.00453] [Cited by in Crossref: 39] [Cited by in F6Publishing: 41] [Article Influence: 7.8] [Reference Citation Analysis]
17 Lee JY, Finkelstein IJ, Arciszewska LK, Sherratt DJ, Greene EC. Single-molecule imaging of FtsK translocation reveals mechanistic features of protein-protein collisions on DNA. Mol Cell 2014;54:832-43. [PMID: 24768536 DOI: 10.1016/j.molcel.2014.03.033] [Cited by in Crossref: 43] [Cited by in F6Publishing: 38] [Article Influence: 5.4] [Reference Citation Analysis]
18 Retchless AC, Lawrence JG. Ecological adaptation in bacteria: speciation driven by codon selection. Mol Biol Evol 2012;29:3669-83. [PMID: 22740635 DOI: 10.1093/molbev/mss171] [Cited by in Crossref: 15] [Cited by in F6Publishing: 13] [Article Influence: 1.5] [Reference Citation Analysis]
19 Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS. New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria. J Bacteriol 2013;195:4466-75. [PMID: 23913324 DOI: 10.1128/JB.00679-13] [Cited by in Crossref: 11] [Cited by in F6Publishing: 4] [Article Influence: 1.2] [Reference Citation Analysis]
20 Demarre G, Galli E, Muresan L, Paly E, David A, Possoz C, Barre FX. Differential management of the replication terminus regions of the two Vibrio cholerae chromosomes during cell division. PLoS Genet 2014;10:e1004557. [PMID: 25255436 DOI: 10.1371/journal.pgen.1004557] [Cited by in Crossref: 25] [Cited by in F6Publishing: 22] [Article Influence: 3.1] [Reference Citation Analysis]
21 Kaljević J, Saaki TNV, Govers SK, Remy O, van Raaphorst R, Lamot T, Laloux G. Chromosome choreography during the non-binary cell cycle of a predatory bacterium. Curr Biol 2021:S0960-9822(21)00819-8. [PMID: 34256020 DOI: 10.1016/j.cub.2021.06.024] [Reference Citation Analysis]
22 Midonet C, Barre FX. Xer Site-Specific Recombination: Promoting Vertical and Horizontal Transmission of Genetic Information. Microbiol Spectr 2014;2. [PMID: 26104463 DOI: 10.1128/microbiolspec.MDNA3-0056-2014] [Cited by in Crossref: 24] [Cited by in F6Publishing: 28] [Article Influence: 4.0] [Reference Citation Analysis]
23 Miele S, Provan JI, Vergne J, Possoz C, Ochsenbein F, Barre FX. The Xer activation factor of TLCΦ expands the possibilities for Xer recombination. Nucleic Acids Res 2022:gkac429. [PMID: 35657090 DOI: 10.1093/nar/gkac429] [Reference Citation Analysis]
24 Kirchberger PC, Ochman H. Resurrection of a global, metagenomically defined gokushovirus. Elife 2020;9:e51599. [PMID: 32101162 DOI: 10.7554/eLife.51599] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 4.0] [Reference Citation Analysis]
25 Kono N, Arakawa K, Sato M, Yoshikawa H, Tomita M, Itaya M. Undesigned selection for replication termination of bacterial chromosomes. J Mol Biol 2014;426:2918-27. [PMID: 24946150 DOI: 10.1016/j.jmb.2014.06.005] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 0.9] [Reference Citation Analysis]
26 Diagne CT, Salhi M, Crozat E, Salomé L, Cornet F, Rousseau P, Tardin C. TPM analyses reveal that FtsK contributes both to the assembly and the activation of the XerCD-dif recombination synapse. Nucleic Acids Res 2014;42:1721-32. [PMID: 24214995 DOI: 10.1093/nar/gkt1024] [Cited by in Crossref: 21] [Cited by in F6Publishing: 17] [Article Influence: 2.3] [Reference Citation Analysis]
27 Emiola A, Oh J. High throughput in situ metagenomic measurement of bacterial replication at ultra-low sequencing coverage. Nat Commun 2018;9:4956. [PMID: 30470746 DOI: 10.1038/s41467-018-07240-8] [Cited by in Crossref: 37] [Cited by in F6Publishing: 34] [Article Influence: 9.3] [Reference Citation Analysis]
28 Chen M, Hernandez-Prieto MA, Loughlin PC, Li Y, Willows RD. Genome and proteome of the chlorophyll f-producing cyanobacterium Halomicronema hongdechloris: adaptative proteomic shifts under different light conditions. BMC Genomics 2019;20:207. [PMID: 30866821 DOI: 10.1186/s12864-019-5587-3] [Cited by in Crossref: 11] [Cited by in F6Publishing: 7] [Article Influence: 3.7] [Reference Citation Analysis]
29 Tian X, Gao Y, Wang S, Adnan Hameed HM, Yu W, Fang C, Zhang J, Tan Y, Cao Z, Guan P, Hu J, Liu J, Zhong N, Zhang T. Rapid visualized assessment of drug efficacy in live mice with a selectable marker-free autoluminescent Klebsiella pneumoniae. Biosens Bioelectron 2021;177:112919. [PMID: 33515974 DOI: 10.1016/j.bios.2020.112919] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
30 Hendrickson HL, Barbeau D, Ceschin R, Lawrence JG. Chromosome architecture constrains horizontal gene transfer in bacteria. PLoS Genet 2018;14:e1007421. [PMID: 29813058 DOI: 10.1371/journal.pgen.1007421] [Cited by in Crossref: 11] [Cited by in F6Publishing: 7] [Article Influence: 2.8] [Reference Citation Analysis]
31 Dam B, Dam S, Blom J, Liesack W. Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2. PLoS One 2013;8:e74767. [PMID: 24130670 DOI: 10.1371/journal.pone.0074767] [Cited by in Crossref: 36] [Cited by in F6Publishing: 33] [Article Influence: 4.0] [Reference Citation Analysis]
32 Girlich D, Bonnin RA, Bogaerts P, De Laveleye M, Huang DT, Dortet L, Glaser P, Glupczynski Y, Naas T. Chromosomal Amplification of the blaOXA-58 Carbapenemase Gene in a Proteus mirabilis Clinical Isolate. Antimicrob Agents Chemother 2017;61:e01697-16. [PMID: 27855079 DOI: 10.1128/AAC.01697-16] [Cited by in Crossref: 27] [Cited by in F6Publishing: 19] [Article Influence: 5.4] [Reference Citation Analysis]
33 Fournes F, Crozat E, Pages C, Tardin C, Salomé L, Cornet F, Rousseau P. FtsK translocation permits discrimination between an endogenous and an imported Xer/dif recombination complex. Proc Natl Acad Sci U S A 2016;113:7882-7. [PMID: 27317749 DOI: 10.1073/pnas.1523178113] [Cited by in Crossref: 16] [Cited by in F6Publishing: 12] [Article Influence: 2.7] [Reference Citation Analysis]
34 Atzinger A, Lawrence JG. Selection for ancient periodic motifs that do not impart DNA bending. PLoS Genet 2020;16:e1009042. [PMID: 33022009 DOI: 10.1371/journal.pgen.1009042] [Reference Citation Analysis]
35 Wang S, Yu W, Liu Z, Cai X, Zeng S, Zhang J, Gao Y, Tan Y, Cao Z, Guo L, Hameed HMA, Khan SA, Khan Z, Tian X, Fang C, Islam MM, Sapkota S, Guan P, Hu J, Liu J, Zhong N, Zhang T. Rapid, serial, non-invasive quantification of Pseudomonas aeruginosa in live mice with a selectable marker-free autoluminescent strain. Biosens Bioelectron 2020;165:112396. [PMID: 32729517 DOI: 10.1016/j.bios.2020.112396] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
36 Kaimer C, Graumann PL. Players between the worlds: multifunctional DNA translocases. Curr Opin Microbiol 2011;14:719-25. [PMID: 22047950 DOI: 10.1016/j.mib.2011.10.004] [Cited by in Crossref: 25] [Cited by in F6Publishing: 23] [Article Influence: 2.3] [Reference Citation Analysis]
37 Crozat E, Fournes F, Cornet F, Hallet B, Rousseau P. Resolution of Multimeric Forms of Circular Plasmids and Chromosomes. Microbiol Spectr 2014;2. [PMID: 26104344 DOI: 10.1128/microbiolspec.PLAS-0025-2014] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 1.3] [Reference Citation Analysis]
38 Demarre G, Galli E, Barre FX. The FtsK Family of DNA Pumps. Adv Exp Med Biol 2013;767:245-62. [PMID: 23161015 DOI: 10.1007/978-1-4614-5037-5_12] [Cited by in Crossref: 21] [Cited by in F6Publishing: 19] [Article Influence: 3.5] [Reference Citation Analysis]
39 Kono N, Tomita M, Arakawa K. Accelerated Laboratory Evolution Reveals the Influence of Replication on the GC Skew in Escherichia coli. Genome Biol Evol 2018;10:3110-7. [PMID: 30371772 DOI: 10.1093/gbe/evy237] [Cited by in Crossref: 8] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
40 Lee JY, Finkelstein IJ, Crozat E, Sherratt DJ, Greene EC. Single-molecule imaging of DNA curtains reveals mechanisms of KOPS sequence targeting by the DNA translocase FtsK. Proc Natl Acad Sci U S A 2012;109:6531-6. [PMID: 22493241 DOI: 10.1073/pnas.1201613109] [Cited by in Crossref: 45] [Cited by in F6Publishing: 39] [Article Influence: 4.5] [Reference Citation Analysis]
41 Xie BB, Rong JC, Tang BL, Wang S, Liu G, Qin QL, Zhang XY, Zhang W, She Q, Chen Y, Li F, Li S, Chen XL, Luo H, Zhang YZ. Evolutionary Trajectory of the Replication Mode of Bacterial Replicons. mBio 2021;12:e02745-20. [PMID: 33500342 DOI: 10.1128/mBio.02745-20] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
42 Zimmerman CU, Herrmann R, Rosengarten R. XerC-mediated DNA inversion at the inverted repeats of the UU172-phase-variable element of Ureaplasma parvum serovar 3. Microbiol Res 2015;170:263-9. [PMID: 25440997 DOI: 10.1016/j.micres.2014.09.002] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
43 Bonde MT, Klausen MS, Anderson MV, Wallin AI, Wang HH, Sommer MO. MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering. Nucleic Acids Res 2014;42:W408-15. [PMID: 24838561 DOI: 10.1093/nar/gku428] [Cited by in Crossref: 37] [Cited by in F6Publishing: 35] [Article Influence: 4.6] [Reference Citation Analysis]