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For: Krupovic M, Prangishvili D, Hendrix RW, Bamford DH. Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev 2011;75:610-35. [PMID: 22126996 DOI: 10.1128/MMBR.00011-11] [Cited by in Crossref: 174] [Cited by in F6Publishing: 91] [Article Influence: 17.4] [Reference Citation Analysis]
Number Citing Articles
1 Krupovic M, Koonin EV. Evolution of eukaryotic single-stranded DNA viruses of the Bidnaviridae family from genes of four other groups of widely different viruses. Sci Rep 2014;4:5347. [PMID: 24939392 DOI: 10.1038/srep05347] [Cited by in Crossref: 43] [Cited by in F6Publishing: 38] [Article Influence: 5.4] [Reference Citation Analysis]
2 Guan J, Bondy-Denomy J. Intracellular Organization by Jumbo Bacteriophages. J Bacteriol 2020;203:e00362-20. [PMID: 32868402 DOI: 10.1128/JB.00362-20] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
3 Mochizuki T, Krupovic M, Pehau-Arnaudet G, Sako Y, Forterre P, Prangishvili D. Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome. Proc Natl Acad Sci U S A 2012;109:13386-91. [PMID: 22826255 DOI: 10.1073/pnas.1203668109] [Cited by in Crossref: 68] [Cited by in F6Publishing: 53] [Article Influence: 6.8] [Reference Citation Analysis]
4 Shapiro JA. Physiology of the read-write genome. J Physiol 2014;592:2319-41. [PMID: 24882816 DOI: 10.1113/jphysiol.2014.271130] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.6] [Reference Citation Analysis]
5 Roszniowski B, McClean S, Drulis-Kawa Z. Burkholderia cenocepacia Prophages-Prevalence, Chromosome Location and Major Genes Involved. Viruses 2018;10:E297. [PMID: 29857552 DOI: 10.3390/v10060297] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
6 Marchfelder A. Special focus CRISPR-Cas. RNA Biol 2013;10:655-8. [PMID: 23872677 DOI: 10.4161/rna.24687] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
7 Calusinska M, Marynowska M, Goux X, Lentzen E, Delfosse P. Analysis of dsDNA and RNA viromes in methanogenic digesters reveals novel viral genetic diversity. Environ Microbiol 2016;18:1162-75. [PMID: 26568175 DOI: 10.1111/1462-2920.13127] [Cited by in Crossref: 12] [Cited by in F6Publishing: 10] [Article Influence: 2.0] [Reference Citation Analysis]
8 Villamor J, Ramos-Barbero MD, González-Torres P, Gabaldón T, Rosselló-Móra R, Meseguer I, Martínez-García M, Santos F, Antón J. Characterization of ecologically diverse viruses infecting co-occurring strains of cosmopolitan hyperhalophilic Bacteroidetes. ISME J 2018;12:424-37. [PMID: 29099492 DOI: 10.1038/ismej.2017.175] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.0] [Reference Citation Analysis]
9 Gregory AC, Solonenko SA, Ignacio-Espinoza JC, LaButti K, Copeland A, Sudek S, Maitland A, Chittick L, Dos Santos F, Weitz JS, Worden AZ, Woyke T, Sullivan MB. Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer. BMC Genomics 2016;17:930. [PMID: 27852226 DOI: 10.1186/s12864-016-3286-x] [Cited by in Crossref: 72] [Cited by in F6Publishing: 51] [Article Influence: 12.0] [Reference Citation Analysis]
10 Berjón-Otero M, Villar L, Salas M, Redrejo-Rodríguez M. Disclosing early steps of protein-primed genome replication of the Gram-positive tectivirus Bam35. Nucleic Acids Res 2016;44:9733-44. [PMID: 27466389 DOI: 10.1093/nar/gkw673] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.3] [Reference Citation Analysis]
11 Serrano-Solís V, Cocho G, José MV. Genomic signatures in viral sequences by in-frame and out-frame mutual information. J Theor Biol 2016;403:1-9. [PMID: 27178876 DOI: 10.1016/j.jtbi.2016.05.014] [Cited by in Crossref: 2] [Article Influence: 0.3] [Reference Citation Analysis]
12 Vafabakhsh R, Kondabagil K, Earnest T, Lee KS, Zhang Z, Dai L, Dahmen KA, Rao VB, Ha T. Single-molecule packaging initiation in real time by a viral DNA packaging machine from bacteriophage T4. Proc Natl Acad Sci U S A 2014;111:15096-101. [PMID: 25288726 DOI: 10.1073/pnas.1407235111] [Cited by in Crossref: 18] [Cited by in F6Publishing: 13] [Article Influence: 2.3] [Reference Citation Analysis]
13 Krupovic M, Koonin EV. Multiple origins of viral capsid proteins from cellular ancestors. Proc Natl Acad Sci U S A 2017;114:E2401-10. [PMID: 28265094 DOI: 10.1073/pnas.1621061114] [Cited by in Crossref: 136] [Cited by in F6Publishing: 100] [Article Influence: 27.2] [Reference Citation Analysis]
14 Meier-Kolthoff JP, Göker M. VICTOR: genome-based phylogeny and classification of prokaryotic viruses. Bioinformatics 2017;33:3396-404. [PMID: 29036289 DOI: 10.1093/bioinformatics/btx440] [Cited by in Crossref: 173] [Cited by in F6Publishing: 148] [Article Influence: 43.3] [Reference Citation Analysis]
15 Campbell A. Life in Science: Alan Campbell. Bacteriophage 2012;2:137-8. [PMID: 23275864 DOI: 10.4161/bact.22762] [Cited by in Crossref: 1] [Article Influence: 0.1] [Reference Citation Analysis]
16 Shu P, Butt AM, Mi Z, Wang W, An X, Pei G, Zhang Z, Huang Y, Zhang X, Shi T, Tong Y. Identification and genomic analysis of a novel member of Microviridae, IME-16, through high-throughput sequencing. Virol Sin 2015;30:301-4. [PMID: 26242376 DOI: 10.1007/s12250-015-3596-1] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
17 Creasy A, Rosario K, Leigh BA, Dishaw LJ, Breitbart M. Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta). Viruses 2018;10:E404. [PMID: 30065169 DOI: 10.3390/v10080404] [Cited by in Crossref: 28] [Cited by in F6Publishing: 22] [Article Influence: 7.0] [Reference Citation Analysis]
18 Goettsch W, Beerenwinkel N, Deng L, Dölken L, Dutilh BE, Erhard F, Kaderali L, von Kleist M, Marquet R, Matthijnssens J, McCallin S, McMahon D, Rattei T, Van Rij RP, Robertson DL, Schwemmle M, Stern-Ginossar N, Marz M. ITN-VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics. Viruses 2021;13:766. [PMID: 33925452 DOI: 10.3390/v13050766] [Reference Citation Analysis]
19 Chachra D, Kaur P, Siddavatam P, Suravajhala P, Saxena HM. On genome annotation of Brucellaphage Gadvasu (BpG): discovery of ORFans for integrated systems biology approaches. Syst Synth Biol 2015;9:57-62. [PMID: 26702310 DOI: 10.1007/s11693-015-9185-7] [Reference Citation Analysis]
20 Amarillas L, Rubí-Rangel L, Chaidez C, González-Robles A, Lightbourn-Rojas L, León-Félix J. Isolation and Characterization of phiLLS, a Novel Phage with Potential Biocontrol Agent against Multidrug-Resistant Escherichia coli. Front Microbiol 2017;8:1355. [PMID: 28785246 DOI: 10.3389/fmicb.2017.01355] [Cited by in Crossref: 33] [Cited by in F6Publishing: 30] [Article Influence: 6.6] [Reference Citation Analysis]
21 Inoue Y, Saga T, Aikawa T, Kumagai M, Shimada A, Kawaguchi Y, Naruse K, Morishita S, Koga A, Takeda H. Complete fusion of a transposon and herpesvirus created the Teratorn mobile element in medaka fish. Nat Commun 2017;8:551. [PMID: 28916771 DOI: 10.1038/s41467-017-00527-2] [Cited by in Crossref: 22] [Cited by in F6Publishing: 15] [Article Influence: 4.4] [Reference Citation Analysis]
22 Gao NL, Zhang C, Zhang Z, Hu S, Lercher MJ, Zhao XM, Bork P, Liu Z, Chen WH. MVP: a microbe-phage interaction database. Nucleic Acids Res 2018;46:D700-7. [PMID: 29177508 DOI: 10.1093/nar/gkx1124] [Cited by in Crossref: 31] [Cited by in F6Publishing: 20] [Article Influence: 10.3] [Reference Citation Analysis]
23 Rizzo AA, Suhanovsky MM, Baker ML, Fraser LC, Jones LM, Rempel DL, Gross ML, Chiu W, Alexandrescu AT, Teschke CM. Multiple functional roles of the accessory I-domain of bacteriophage P22 coat protein revealed by NMR structure and CryoEM modeling. Structure 2014;22:830-41. [PMID: 24836025 DOI: 10.1016/j.str.2014.04.003] [Cited by in Crossref: 32] [Cited by in F6Publishing: 32] [Article Influence: 4.0] [Reference Citation Analysis]
24 Koonin EV, Dolja VV. Virus world as an evolutionary network of viruses and capsidless selfish elements. Microbiol Mol Biol Rev 2014;78:278-303. [PMID: 24847023 DOI: 10.1128/MMBR.00049-13] [Cited by in Crossref: 154] [Cited by in F6Publishing: 75] [Article Influence: 22.0] [Reference Citation Analysis]
25 Rensen EI, Mochizuki T, Quemin E, Schouten S, Krupovic M, Prangishvili D. A virus of hyperthermophilic archaea with a unique architecture among DNA viruses. Proc Natl Acad Sci U S A 2016;113:2478-83. [PMID: 26884161 DOI: 10.1073/pnas.1518929113] [Cited by in Crossref: 28] [Cited by in F6Publishing: 24] [Article Influence: 4.7] [Reference Citation Analysis]
26 Forterre P. The common ancestor of archaea and eukarya was not an archaeon. Archaea 2013;2013:372396. [PMID: 24348094 DOI: 10.1155/2013/372396] [Cited by in Crossref: 71] [Cited by in F6Publishing: 62] [Article Influence: 7.9] [Reference Citation Analysis]
27 Diemer GS, Stedman KM. A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses. Biol Direct. 2012;7:13. [PMID: 22515485 DOI: 10.1186/1745-6150-7-13] [Cited by in Crossref: 110] [Cited by in F6Publishing: 97] [Article Influence: 11.0] [Reference Citation Analysis]
28 Roux S, Krupovic M, Poulet A, Debroas D, Enault F. Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads. PLoS One 2012;7:e40418. [PMID: 22808158 DOI: 10.1371/journal.pone.0040418] [Cited by in Crossref: 112] [Cited by in F6Publishing: 103] [Article Influence: 11.2] [Reference Citation Analysis]
29 Kang I, Jang H, Oh HM, Cho JC. Complete genome sequence of Marinomonas bacteriophage P12026. J Virol 2012;86:8909-10. [PMID: 22843865 DOI: 10.1128/JVI.01328-12] [Cited by in Crossref: 9] [Cited by in F6Publishing: 5] [Article Influence: 0.9] [Reference Citation Analysis]
30 Rosenwald AG, Murray B, Toth T, Madupu R, Kyrillos A, Arora G. Evidence for horizontal gene transfer between Chlamydophila pneumoniae and Chlamydia phage. Bacteriophage 2014;4:e965076. [PMID: 26713222 DOI: 10.4161/21597073.2014.965076] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 1.6] [Reference Citation Analysis]
31 van Wolferen M, Ajon M, Driessen AJ, Albers SV. How hyperthermophiles adapt to change their lives: DNA exchange in extreme conditions. Extremophiles 2013;17:545-63. [PMID: 23712907 DOI: 10.1007/s00792-013-0552-6] [Cited by in Crossref: 32] [Cited by in F6Publishing: 23] [Article Influence: 3.6] [Reference Citation Analysis]
32 Prangishvili D, Koonin EV, Krupovic M. Genomics and biology of Rudiviruses, a model for the study of virus-host interactions in Archaea. Biochem Soc Trans 2013;41:443-50. [PMID: 23356326 DOI: 10.1042/BST20120313] [Cited by in Crossref: 33] [Cited by in F6Publishing: 24] [Article Influence: 3.7] [Reference Citation Analysis]
33 Krupovic M, Koonin EV. Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution. Nat Rev Microbiol 2015;13:105-15. [PMID: 25534808 DOI: 10.1038/nrmicro3389] [Cited by in Crossref: 117] [Cited by in F6Publishing: 90] [Article Influence: 14.6] [Reference Citation Analysis]
34 Turzynski V, Monsees I, Moraru C, Probst AJ. Imaging Techniques for Detecting Prokaryotic Viruses in Environmental Samples. Viruses 2021;13:2126. [PMID: 34834933 DOI: 10.3390/v13112126] [Reference Citation Analysis]
35 Svirskaitė J, Oksanen HM, Daugelavičius R, Bamford DH. Monitoring Physiological Changes in Haloarchaeal Cell during Virus Release. Viruses 2016;8:59. [PMID: 26927156 DOI: 10.3390/v8030059] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 1.8] [Reference Citation Analysis]
36 Barylski J, Enault F, Dutilh BE, Schuller MB, Edwards RA, Gillis A, Klumpp J, Knezevic P, Krupovic M, Kuhn JH, Lavigne R, Oksanen HM, Sullivan MB, Jang HB, Simmonds P, Aiewsakun P, Wittmann J, Tolstoy I, Brister JR, Kropinski AM, Adriaenssens EM. Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages. Syst Biol 2020;69:110-23. [PMID: 31127947 DOI: 10.1093/sysbio/syz036] [Cited by in Crossref: 40] [Cited by in F6Publishing: 37] [Article Influence: 20.0] [Reference Citation Analysis]
37 Lee G, Chakraborty U, Gebhart D, Govoni GR, Zhou ZH, Scholl D. F-Type Bacteriocins of Listeria monocytogenes: a New Class of Phage Tail-Like Structures Reveals Broad Parallel Coevolution between Tailed Bacteriophages and High-Molecular-Weight Bacteriocins. J Bacteriol 2016;198:2784-93. [PMID: 27457717 DOI: 10.1128/JB.00489-16] [Cited by in Crossref: 21] [Cited by in F6Publishing: 11] [Article Influence: 3.5] [Reference Citation Analysis]
38 Łobocka M, Dąbrowska K, Górski A. Engineered Bacteriophage Therapeutics: Rationale, Challenges and Future. BioDrugs 2021;35:255-80. [PMID: 33881767 DOI: 10.1007/s40259-021-00480-z] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 6.0] [Reference Citation Analysis]
39 Quemin ER, Lucas S, Daum B, Quax TE, Kühlbrandt W, Forterre P, Albers SV, Prangishvili D, Krupovic M. First insights into the entry process of hyperthermophilic archaeal viruses. J Virol 2013;87:13379-85. [PMID: 24089554 DOI: 10.1128/JVI.02742-13] [Cited by in Crossref: 50] [Cited by in F6Publishing: 28] [Article Influence: 5.6] [Reference Citation Analysis]
40 Senčilo A, Roine E. A Glimpse of the genomic diversity of haloarchaeal tailed viruses. Front Microbiol 2014;5:84. [PMID: 24659986 DOI: 10.3389/fmicb.2014.00084] [Cited by in Crossref: 4] [Cited by in F6Publishing: 13] [Article Influence: 0.5] [Reference Citation Analysis]
41 Senčilo A, Jacobs-Sera D, Russell DA, Ko CC, Bowman CA, Atanasova NS, Österlund E, Oksanen HM, Bamford DH, Hatfull GF, Roine E, Hendrix RW. Snapshot of haloarchaeal tailed virus genomes. RNA Biol 2013;10:803-16. [PMID: 23470522 DOI: 10.4161/rna.24045] [Cited by in Crossref: 43] [Cited by in F6Publishing: 38] [Article Influence: 4.8] [Reference Citation Analysis]
42 Kallies R, Kiesel B, Schmidt M, Kacza J, Ghanem N, Narr A, Zopfi J, Wick LY, Hackermüller J, Harms H, Chatzinotas A. Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies. Stand Genomic Sci 2017;12:20. [PMID: 28168014 DOI: 10.1186/s40793-017-0235-5] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
43 Zablocki O, van Zyl LJ, Kirby B, Trindade M. Diversity of dsDNA Viruses in a South African Hot Spring Assessed by Metagenomics and Microscopy. Viruses 2017;9:E348. [PMID: 29156552 DOI: 10.3390/v9110348] [Cited by in Crossref: 12] [Cited by in F6Publishing: 8] [Article Influence: 2.4] [Reference Citation Analysis]
44 Koonin EV, Krupovic M, Yutin N. Evolution of double-stranded DNA viruses of eukaryotes: from bacteriophages to transposons to giant viruses. Ann N Y Acad Sci 2015;1341:10-24. [PMID: 25727355 DOI: 10.1111/nyas.12728] [Cited by in Crossref: 64] [Cited by in F6Publishing: 52] [Article Influence: 9.1] [Reference Citation Analysis]
45 Charon J, Marcelino VR, Wetherbee R, Verbruggen H, Holmes EC. Metatranscriptomic Identification of Diverse and Divergent RNA Viruses in Green and Chlorarachniophyte Algae Cultures. Viruses 2020;12:E1180. [PMID: 33086653 DOI: 10.3390/v12101180] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
46 Lopes A, Tavares P, Petit MA, Guérois R, Zinn-Justin S. Automated classification of tailed bacteriophages according to their neck organization. BMC Genomics 2014;15:1027. [PMID: 25428721 DOI: 10.1186/1471-2164-15-1027] [Cited by in Crossref: 91] [Cited by in F6Publishing: 82] [Article Influence: 11.4] [Reference Citation Analysis]
47 Amarillas L, Chaidez C, González-Robles A, Lugo-Melchor Y, León-Félix J. Characterization of novel bacteriophage phiC119 capable of lysing multidrug-resistant Shiga toxin-producing Escherichia coli O157:H7. PeerJ 2016;4:e2423. [PMID: 27672499 DOI: 10.7717/peerj.2423] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 1.7] [Reference Citation Analysis]
48 Anderson CL, Sullivan MB, Fernando SC. Dietary energy drives the dynamic response of bovine rumen viral communities. Microbiome 2017;5:155. [PMID: 29179741 DOI: 10.1186/s40168-017-0374-3] [Cited by in Crossref: 31] [Cited by in F6Publishing: 24] [Article Influence: 6.2] [Reference Citation Analysis]
49 Nigro OD, Jungbluth SP, Lin HT, Hsieh CC, Miranda JA, Schvarcz CR, Rappé MS, Steward GF. Viruses in the Oceanic Basement. mBio 2017;8:e02129-16. [PMID: 28270584 DOI: 10.1128/mBio.02129-16] [Cited by in Crossref: 32] [Cited by in F6Publishing: 16] [Article Influence: 6.4] [Reference Citation Analysis]
50 Wang Y, Sima L, Lv J, Huang S, Liu Y, Wang J, Krupovic M, Chen X. Identification, Characterization, and Application of the Replicon Region of the Halophilic Temperate Sphaerolipovirus SNJ1. J Bacteriol 2016;198:1952-64. [PMID: 27137505 DOI: 10.1128/JB.00131-16] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 1.8] [Reference Citation Analysis]
51 Mikalová L, Bosák J, Hříbková H, Dědičová D, Benada O, Šmarda J, Šmajs D. Novel Temperate Phages of Salmonella enterica subsp. salamae and subsp. diarizonae and Their Activity against Pathogenic S. enterica subsp. enterica Isolates. PLoS One 2017;12:e0170734. [PMID: 28118395 DOI: 10.1371/journal.pone.0170734] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
52 Hopkins M, Kailasan S, Cohen A, Roux S, Tucker KP, Shevenell A, Agbandje-McKenna M, Breitbart M. Diversity of environmental single-stranded DNA phages revealed by PCR amplification of the partial major capsid protein. ISME J 2014;8:2093-103. [PMID: 24694711 DOI: 10.1038/ismej.2014.43] [Cited by in Crossref: 45] [Cited by in F6Publishing: 37] [Article Influence: 5.6] [Reference Citation Analysis]
53 Lechuga A, Lood C, Berjón-Otero M, Del Prado A, Wagemans J, van Noort V, Lavigne R, Salas M, Redrejo-Rodríguez M. Unraveling Protein Interactions between the Temperate Virus Bam35 and Its Bacillus Host Using an Integrative Yeast Two Hybrid-High Throughput Sequencing Approach. Int J Mol Sci 2021;22:11105. [PMID: 34681765 DOI: 10.3390/ijms222011105] [Reference Citation Analysis]
54 Abedon ST. Phage therapy: eco-physiological pharmacology. Scientifica (Cairo) 2014;2014:581639. [PMID: 25031881 DOI: 10.1155/2014/581639] [Cited by in Crossref: 23] [Cited by in F6Publishing: 24] [Article Influence: 2.9] [Reference Citation Analysis]
55 Burstein D, Sun CL, Brown CT, Sharon I, Anantharaman K, Probst AJ, Thomas BC, Banfield JF. Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems. Nat Commun 2016;7:10613. [PMID: 26837824 DOI: 10.1038/ncomms10613] [Cited by in Crossref: 129] [Cited by in F6Publishing: 100] [Article Influence: 21.5] [Reference Citation Analysis]
56 Prangishvili D, Bamford DH, Forterre P, Iranzo J, Koonin EV, Krupovic M. The enigmatic archaeal virosphere. Nat Rev Microbiol 2017;15:724-39. [PMID: 29123227 DOI: 10.1038/nrmicro.2017.125] [Cited by in Crossref: 100] [Cited by in F6Publishing: 80] [Article Influence: 20.0] [Reference Citation Analysis]
57 Bautista MA, Black JA, Youngblut ND, Whitaker RJ. Differentiation and Structure in Sulfolobus islandicus Rod-Shaped Virus Populations. Viruses 2017;9:E120. [PMID: 28534836 DOI: 10.3390/v9050120] [Cited by in Crossref: 22] [Cited by in F6Publishing: 16] [Article Influence: 4.4] [Reference Citation Analysis]
58 Gilbert RA, Townsend EM, Crew KS, Hitch TCA, Friedersdorff JCA, Creevey CJ, Pope PB, Ouwerkerk D, Jameson E. Rumen Virus Populations: Technological Advances Enhancing Current Understanding. Front Microbiol 2020;11:450. [PMID: 32273870 DOI: 10.3389/fmicb.2020.00450] [Cited by in Crossref: 5] [Cited by in F6Publishing: 1] [Article Influence: 2.5] [Reference Citation Analysis]
59 Iranzo J, Krupovic M, Koonin EV. The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing. mBio 2016;7:e00978-16. [PMID: 27486193 DOI: 10.1128/mBio.00978-16] [Cited by in Crossref: 108] [Cited by in F6Publishing: 60] [Article Influence: 18.0] [Reference Citation Analysis]
60 Kang I, Oh HM, Kang D, Cho JC. Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans. Proc Natl Acad Sci U S A 2013;110:12343-8. [PMID: 23798439 DOI: 10.1073/pnas.1219930110] [Cited by in Crossref: 93] [Cited by in F6Publishing: 81] [Article Influence: 10.3] [Reference Citation Analysis]
61 Jaubert C, Danioux C, Oberto J, Cortez D, Bize A, Krupovic M, She Q, Forterre P, Prangishvili D, Sezonov G. Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon. Open Biol 2013;3:130010. [PMID: 23594878 DOI: 10.1098/rsob.130010] [Cited by in Crossref: 49] [Cited by in F6Publishing: 45] [Article Influence: 5.4] [Reference Citation Analysis]
62 Biswas A, Gagnon JN, Brouns SJ, Fineran PC, Brown CM. CRISPRTarget: bioinformatic prediction and analysis of crRNA targets. RNA Biol 2013;10:817-27. [PMID: 23492433 DOI: 10.4161/rna.24046] [Cited by in Crossref: 167] [Cited by in F6Publishing: 146] [Article Influence: 18.6] [Reference Citation Analysis]
63 Sharma A, Schmidt M, Kiesel B, Mahato NK, Cralle L, Singh Y, Richnow HH, Gilbert JA, Arnold W, Lal R. Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes. Front Microbiol 2018;9:3095. [PMID: 30619174 DOI: 10.3389/fmicb.2018.03095] [Cited by in Crossref: 13] [Cited by in F6Publishing: 10] [Article Influence: 3.3] [Reference Citation Analysis]
64 Evseev P, Sykilinda N, Gorshkova A, Kurochkina L, Ziganshin R, Drucker V, Miroshnikov K. Pseudomonas Phage PaBG-A Jumbo Member of an Old Parasite Family. Viruses 2020;12:E721. [PMID: 32635178 DOI: 10.3390/v12070721] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
65 Marine R, McCarren C, Vorrasane V, Nasko D, Crowgey E, Polson SW, Wommack KE. Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome. Microbiome 2014;2:3. [PMID: 24475755 DOI: 10.1186/2049-2618-2-3] [Cited by in Crossref: 63] [Cited by in F6Publishing: 57] [Article Influence: 7.9] [Reference Citation Analysis]
66 Reis-Cunha JL, Bartholomeu DC, Manson AL, Earl AM, Cerqueira GC. ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database. PLoS One 2019;14:e0223364. [PMID: 31577829 DOI: 10.1371/journal.pone.0223364] [Cited by in Crossref: 12] [Cited by in F6Publishing: 10] [Article Influence: 4.0] [Reference Citation Analysis]
67 Gorlas A, Krupovic M, Forterre P, Geslin C. Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1. Appl Environ Microbiol 2013;79:3822-8. [PMID: 23584787 DOI: 10.1128/AEM.00525-13] [Cited by in Crossref: 20] [Cited by in F6Publishing: 10] [Article Influence: 2.2] [Reference Citation Analysis]
68 Wang H, Peng N, Shah SA, Huang L, She Q. Archaeal extrachromosomal genetic elements. Microbiol Mol Biol Rev 2015;79:117-52. [PMID: 25694123 DOI: 10.1128/MMBR.00042-14] [Cited by in Crossref: 45] [Cited by in F6Publishing: 26] [Article Influence: 6.4] [Reference Citation Analysis]
69 Krupovic M, Bamford DH, Koonin EV. Conservation of major and minor jelly-roll capsid proteins in Polinton (Maverick) transposons suggests that they are bona fide viruses. Biol Direct 2014;9:6. [PMID: 24773695 DOI: 10.1186/1745-6150-9-6] [Cited by in Crossref: 64] [Cited by in F6Publishing: 53] [Article Influence: 8.0] [Reference Citation Analysis]
70 Koonin EV, Dolja VV, Krupovic M. Origins and evolution of viruses of eukaryotes: The ultimate modularity. Virology 2015;479-480:2-25. [PMID: 25771806 DOI: 10.1016/j.virol.2015.02.039] [Cited by in Crossref: 286] [Cited by in F6Publishing: 232] [Article Influence: 40.9] [Reference Citation Analysis]
71 Pietilä MK, Laurinmäki P, Russell DA, Ko CC, Jacobs-Sera D, Butcher SJ, Bamford DH, Hendrix RW. Insights into head-tailed viruses infecting extremely halophilic archaea. J Virol 2013;87:3248-60. [PMID: 23283946 DOI: 10.1128/JVI.03397-12] [Cited by in Crossref: 46] [Cited by in F6Publishing: 23] [Article Influence: 5.1] [Reference Citation Analysis]
72 Dziewit L, Oscik K, Bartosik D, Radlinska M. Molecular characterization of a novel temperate sinorhizobium bacteriophage, ФLM21, encoding DNA methyltransferase with CcrM-like specificity. J Virol 2014;88:13111-24. [PMID: 25187538 DOI: 10.1128/JVI.01875-14] [Cited by in Crossref: 20] [Cited by in F6Publishing: 15] [Article Influence: 2.5] [Reference Citation Analysis]
73 Fernandes S, São-José C. Enzymes and Mechanisms Employed by Tailed Bacteriophages to Breach the Bacterial Cell Barriers. Viruses 2018;10:E396. [PMID: 30060520 DOI: 10.3390/v10080396] [Cited by in Crossref: 57] [Cited by in F6Publishing: 48] [Article Influence: 14.3] [Reference Citation Analysis]
74 Zebec Z, Zink IA, Kerou M, Schleper C. Efficient CRISPR-Mediated Post-Transcriptional Gene Silencing in a Hyperthermophilic Archaeon Using Multiplexed crRNA Expression. G3 (Bethesda) 2016;6:3161-8. [PMID: 27507792 DOI: 10.1534/g3.116.032482] [Cited by in Crossref: 16] [Cited by in F6Publishing: 14] [Article Influence: 2.7] [Reference Citation Analysis]
75 Zanotti G, Grinzato A. Structure of filamentous viruses. Curr Opin Virol 2021;51:25-33. [PMID: 34592708 DOI: 10.1016/j.coviro.2021.09.006] [Reference Citation Analysis]
76 Cvirkaite-Krupovic V, Carballido-López R, Tavares P. Virus evolution toward limited dependence on nonessential functions of the host: the case of bacteriophage SPP1. J Virol 2015;89:2875-83. [PMID: 25540376 DOI: 10.1128/JVI.03540-14] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 0.6] [Reference Citation Analysis]
77 Yuan Y, Gao M. Jumbo Bacteriophages: An Overview. Front Microbiol 2017;8:403. [PMID: 28352259 DOI: 10.3389/fmicb.2017.00403] [Cited by in Crossref: 78] [Cited by in F6Publishing: 62] [Article Influence: 15.6] [Reference Citation Analysis]
78 Yutin N, Bäckström D, Ettema TJG, Krupovic M, Koonin EV. Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis. Virol J 2018;15:67. [PMID: 29636073 DOI: 10.1186/s12985-018-0974-y] [Cited by in Crossref: 36] [Cited by in F6Publishing: 28] [Article Influence: 9.0] [Reference Citation Analysis]
79 Kazlauskas D, Krupovic M, Venclovas Č. The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes. Nucleic Acids Res 2016;44:4551-64. [PMID: 27112572 DOI: 10.1093/nar/gkw322] [Cited by in Crossref: 48] [Cited by in F6Publishing: 42] [Article Influence: 8.0] [Reference Citation Analysis]
80 Krupovic M, Zhi N, Li J, Hu G, Koonin EV, Wong S, Shevchenko S, Zhao K, Young NS. Multiple layers of chimerism in a single-stranded DNA virus discovered by deep sequencing. Genome Biol Evol 2015;7:993-1001. [PMID: 25840414 DOI: 10.1093/gbe/evv034] [Cited by in Crossref: 32] [Cited by in F6Publishing: 30] [Article Influence: 4.6] [Reference Citation Analysis]
81 Moon K, Cho JC. Metaviromics coupled with phage-host identification to open the viral 'black box'. J Microbiol 2021;59:311-23. [PMID: 33624268 DOI: 10.1007/s12275-021-1016-9] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
82 Danovaro R, Dell'Anno A, Corinaldesi C, Rastelli E, Cavicchioli R, Krupovic M, Noble RT, Nunoura T, Prangishvili D. Virus-mediated archaeal hecatomb in the deep seafloor. Sci Adv 2016;2:e1600492. [PMID: 27757416 DOI: 10.1126/sciadv.1600492] [Cited by in Crossref: 59] [Cited by in F6Publishing: 52] [Article Influence: 9.8] [Reference Citation Analysis]
83 Kristensen DM, Waller AS, Yamada T, Bork P, Mushegian AR, Koonin EV. Orthologous gene clusters and taxon signature genes for viruses of prokaryotes. J Bacteriol 2013;195:941-50. [PMID: 23222723 DOI: 10.1128/JB.01801-12] [Cited by in Crossref: 83] [Cited by in F6Publishing: 56] [Article Influence: 8.3] [Reference Citation Analysis]
84 Gil JF, Mesa V, Estrada-Ortiz N, Lopez-Obando M, Gómez A, Plácido J. Viruses in Extreme Environments, Current Overview, and Biotechnological Potential. Viruses 2021;13:81. [PMID: 33430116 DOI: 10.3390/v13010081] [Cited by in Crossref: 2] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
85 Malagon F, Estrella LA, Stockelman MG, Hamilton T, Teneza-Mora N, Biswas B. Phage-Mediated Molecular Detection (PMMD): A Novel Rapid Method for Phage-Specific Bacterial Detection. Viruses 2020;12:E435. [PMID: 32290520 DOI: 10.3390/v12040435] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
86 Krupovic M, Gonnet M, Hania WB, Forterre P, Erauso G. Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids. PLoS One 2013;8:e49044. [PMID: 23326305 DOI: 10.1371/journal.pone.0049044] [Cited by in Crossref: 50] [Cited by in F6Publishing: 45] [Article Influence: 5.6] [Reference Citation Analysis]
87 DiMaio F, Yu X, Rensen E, Krupovic M, Prangishvili D, Egelman EH. Virology. A virus that infects a hyperthermophile encapsidates A-form DNA. Science 2015;348:914-7. [PMID: 25999507 DOI: 10.1126/science.aaa4181] [Cited by in Crossref: 76] [Cited by in F6Publishing: 59] [Article Influence: 10.9] [Reference Citation Analysis]
88 Swenson KM, Guertin P, Deschênes H, Bergeron A. Reconstructing the modular recombination history of Staphylococcus aureus phages. BMC Bioinformatics 2013;14 Suppl 15:S17. [PMID: 24564731 DOI: 10.1186/1471-2105-14-S15-S17] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
89 Philosof A, Yutin N, Flores-Uribe J, Sharon I, Koonin EV, Béjà O. Novel Abundant Oceanic Viruses of Uncultured Marine Group II Euryarchaeota. Curr Biol 2017;27:1362-8. [PMID: 28457865 DOI: 10.1016/j.cub.2017.03.052] [Cited by in Crossref: 54] [Cited by in F6Publishing: 45] [Article Influence: 10.8] [Reference Citation Analysis]
90 Dedrick RM, Marinelli LJ, Newton GL, Pogliano K, Pogliano J, Hatfull GF. Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage Giles. Mol Microbiol 2013;88:577-89. [PMID: 23560716 DOI: 10.1111/mmi.12210] [Cited by in Crossref: 37] [Cited by in F6Publishing: 32] [Article Influence: 4.1] [Reference Citation Analysis]
91 Jiang X, Hall AB, Xavier RJ, Alm EJ. Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools. PLoS One 2019;14:e0223680. [PMID: 31830054 DOI: 10.1371/journal.pone.0223680] [Cited by in Crossref: 22] [Cited by in F6Publishing: 16] [Article Influence: 7.3] [Reference Citation Analysis]
92 Roux S, Krupovic M, Debroas D, Forterre P, Enault F. Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences. Open Biol 2013;3:130160. [PMID: 24335607 DOI: 10.1098/rsob.130160] [Cited by in Crossref: 95] [Cited by in F6Publishing: 80] [Article Influence: 10.6] [Reference Citation Analysis]
93 Dion MB, Oechslin F, Moineau S. Phage diversity, genomics and phylogeny. Nat Rev Microbiol 2020;18:125-38. [PMID: 32015529 DOI: 10.1038/s41579-019-0311-5] [Cited by in Crossref: 107] [Cited by in F6Publishing: 82] [Article Influence: 53.5] [Reference Citation Analysis]
94 Pietilä MK, Laurinmäki P, Russell DA, Ko CC, Jacobs-Sera D, Hendrix RW, Bamford DH, Butcher SJ. Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story. Proc Natl Acad Sci U S A 2013;110:10604-9. [PMID: 23733949 DOI: 10.1073/pnas.1303047110] [Cited by in Crossref: 67] [Cited by in F6Publishing: 62] [Article Influence: 7.4] [Reference Citation Analysis]
95 Roux S, Krupovic M, Daly RA, Borges AL, Nayfach S, Schulz F, Sharrar A, Matheus Carnevali PB, Cheng JF, Ivanova NN, Bondy-Denomy J, Wrighton KC, Woyke T, Visel A, Kyrpides NC, Eloe-Fadrosh EA. Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. Nat Microbiol 2019;4:1895-906. [PMID: 31332386 DOI: 10.1038/s41564-019-0510-x] [Cited by in Crossref: 85] [Cited by in F6Publishing: 65] [Article Influence: 28.3] [Reference Citation Analysis]
96 . Further Readings in Geomicrobiology. Geomicrobiology Journal 2012;29:494-5. [DOI: 10.1080/01490451.2012.662439] [Reference Citation Analysis]
97 Brüggemann H, Lood R. Bacteriophages infecting Propionibacterium acnes. Biomed Res Int 2013;2013:705741. [PMID: 23691509 DOI: 10.1155/2013/705741] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 1.1] [Reference Citation Analysis]
98 Zhou R, Yin J, Lu J, Wang J, Zhang W, Yang S, Wang X, Shen Q. Genome Sequences of Five Microviruses and a Murine Norovirus. Microbiol Resour Announc 2021;10:e0023221. [PMID: 34042487 DOI: 10.1128/MRA.00232-21] [Reference Citation Analysis]