| 1 |
Searle B, Müller M, Carell T, Kellett A. Third-Generation Sequencing of Epigenetic DNA. Angew Chem Int Ed Engl 2023;62:e202215704. [PMID: 36524852 DOI: 10.1002/anie.202215704] [Reference Citation Analysis]
|
| 2 |
Næss LM, Maugesten IS, Caugant DA, Kassu A, Aseffa A, Børud B. Genetic, Functional, and Immunogenic Analyses of the O-Linked Protein Glycosylation System in Neisseria meningitidis Serogroup A ST-7 Isolates. J Bacteriol 2023;205:e0045822. [PMID: 36852982 DOI: 10.1128/jb.00458-22] [Reference Citation Analysis]
|
| 3 |
Gao L, Xu W, Xin T, Song J. Application of third-generation sequencing to herbal genomics. Front Plant Sci 2023;14. [DOI: 10.3389/fpls.2023.1124536] [Reference Citation Analysis]
|
| 4 |
Stephens KM, Barta R, Fleming K, Perez JC, Wu SF, Snedecor J, Holt CL, LaRue B, Budowle B. Developmental validation of the ForenSeq MainstAY kit, MiSeq FGx sequencing system and ForenSeq Universal Analysis Software. Forensic Sci Int Genet 2023;64:102851. [PMID: 36907074 DOI: 10.1016/j.fsigen.2023.102851] [Reference Citation Analysis]
|
| 5 |
Pinna M, Zangaro F, Saccomanno B, Scalone C, Bozzeda F, Fanini L, Specchia V. An Overview of Ecological Indicators of Fish to Evaluate the Anthropogenic Pressures in Aquatic Ecosystems: From Traditional to Innovative DNA-Based Approaches. Water 2023;15:949. [DOI: 10.3390/w15050949] [Reference Citation Analysis]
|
| 6 |
Handy MY, Sbardellati DL, Yu M, Saleh NW, Ostwald MM, Vannette RL. Incipiently social carpenter bees (Xylocopa) host distinctive gut bacterial communities and display geographical structure as revealed by full-length PacBio 16S rRNA sequencing. Mol Ecol 2023;32:1530-43. [PMID: 36239475 DOI: 10.1111/mec.16736] [Cited by in Crossref: 2] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 7 |
Mu Y, Song C, Yang J, Zhang Y, Zhang X. Next-Generation DNA Barcoding for Fish Identification Using High-Throughput Sequencing in Tai Lake, China. Water 2023;15:774. [DOI: 10.3390/w15040774] [Reference Citation Analysis]
|
| 8 |
Zayed AR, Bitar DM, Steinert M, Lück C, Spröer C, Brettar I, Höfle MG, Bunk B. Comparative Genomics of Legionella pneumophila Isolates from the West Bank and Germany Support Molecular Epidemiology of Legionnaires' Disease. Microorganisms 2023;11. [PMID: 36838414 DOI: 10.3390/microorganisms11020449] [Reference Citation Analysis]
|
| 9 |
Wei J, Luo B, Kong S, Liu W, Zhang C, Wei Z, Min X. Screening and identification of multiple abiotic stress responsive candidate genes based on hybrid-sequencing in Vicia sativa. Heliyon 2023;9:e13536. [PMID: 36816321 DOI: 10.1016/j.heliyon.2023.e13536] [Reference Citation Analysis]
|
| 10 |
Liang C, Wagstaff J, Aharony N, Schmit V, Manheim D. Managing the Transition to Widespread Metagenomic Monitoring: Policy Considerations for Future Biosurveillance. Health Secur 2023;21:34-45. [PMID: 36629860 DOI: 10.1089/hs.2022.0029] [Reference Citation Analysis]
|
| 11 |
Sullivan JA, Schoch K, Spillmann RC, Shashi V. Exome/Genome Sequencing in Undiagnosed Syndromes. Annu Rev Med 2023;74:489-502. [PMID: 36706750 DOI: 10.1146/annurev-med-042921-110721] [Reference Citation Analysis]
|
| 12 |
Zayed AR, Bunk B, Jaber L, Abu-Teer H, Ali M, Steinert M, Höfle MG, Brettar I, Bitar DM. Whole-genome sequencing of the clinical isolate of Legionella pneumophila ALAW1 from the West Bank allows high-resolution typing and determination of pathogenicity mechanisms. Eur Clin Respir J 2023;10:2168346. [PMID: 36698751 DOI: 10.1080/20018525.2023.2168346] [Reference Citation Analysis]
|
| 13 |
Piña JS, Orozco-Arias S, Tobón-Orozco N, Camargo-Forero L, Tabares-Soto R, Guyot R. G-SAIP: Graphical Sequence Alignment Through Parallel Programming in the Post-Genomic Era. Evol Bioinform Online 2023;19:11769343221150585. [PMID: 36703866 DOI: 10.1177/11769343221150585] [Reference Citation Analysis]
|
| 14 |
French N. Whole-genome sequencing for food safety. Present Knowledge in Food Safety 2023. [DOI: 10.1016/b978-0-12-819470-6.00065-2] [Reference Citation Analysis]
|
| 15 |
Novroski N. Emerging technologies for DNA analysis of challenged samples. Forensic Genetic Approaches for Identification of Human Skeletal Remains 2023. [DOI: 10.1016/b978-0-12-815766-4.00016-9] [Reference Citation Analysis]
|
| 16 |
Dallner M, Nasheri N. Foodborne Viral Pathogen Big Data: Genomic Analysis. Food Microbiology and Food Safety 2023. [DOI: 10.1007/978-3-031-07179-9_3] [Reference Citation Analysis]
|
| 17 |
El-Adawy H, Hotzel H, García-Soto S, Tomaso H, Hafez HM, Schwarz S, Neubauer H, Linde J. Genomic insight into Campylobacter jejuni isolated from commercial turkey flocks in Germany using whole-genome sequencing analysis. Front Vet Sci 2023;10:1092179. [PMID: 36875995 DOI: 10.3389/fvets.2023.1092179] [Reference Citation Analysis]
|
| 18 |
Musa SM, Kamal SS, Nielsen DS, Ahmad HF. Preliminary screening of bacterial and fungal communities from spontaneous fermentation of Durian pulps (tempoyak) using high-throughput amplicon sequencing. THE PHYSICS OF SURFACES: Aspects of the Kinetics and Dynamics of Surface
Reaction 2023. [DOI: 10.1063/5.0114363] [Reference Citation Analysis]
|
| 19 |
Glotov O, Chernov A, Fedyakov M, Larionova V, Zaretsky A, Donnikov M, Glotov A. Personalized medicine: the role of sequencing technologies in diagnostics, prediction and selection of treatment of monogenous and multifactorial diseases. BioComm 2022;67. [DOI: 10.21638/spbu03.2022.403] [Reference Citation Analysis]
|
| 20 |
Dat TTH, Steinert G, Cuc NTK, Cuong PV, Smidt H, Sipkema D. Diversity of Bacterial Secondary Metabolite Biosynthetic Gene Clusters in Three Vietnamese Sponges. Mar Drugs 2022;21. [PMID: 36662202 DOI: 10.3390/md21010029] [Reference Citation Analysis]
|
| 21 |
Worth JRP, Shitara T, Kitamura K, Kikuchi S, Kanetani S, Matsui T, Uchiyama K, Tomaru N. Low‐elevation warm‐edge Fagus crenata populations in the core of the species range are glacial relicts with high conservation value. Ecological Research 2022. [DOI: 10.1111/1440-1703.12378] [Reference Citation Analysis]
|
| 22 |
Robert C, Cascella F, Mellai M, Barizzone N, Mignone F, Massa N, Nobile V, Bona E. Influence of Sex on the Microbiota of the Human Face. Microorganisms 2022;10. [PMID: 36557723 DOI: 10.3390/microorganisms10122470] [Reference Citation Analysis]
|
| 23 |
Salonia F, Ciacciulli A, Pappalardo HD, Poles L, Pindo M, Larger S, Caruso P, Caruso M, Licciardello C. A dual sgRNA-directed CRISPR/Cas9 construct for editing the fruit-specific β-cyclase 2 gene in pigmented citrus fruits. Front Plant Sci 2022;13:975917. [PMID: 36582639 DOI: 10.3389/fpls.2022.975917] [Reference Citation Analysis]
|
| 24 |
Zhou S, Hill CS, Spielvogel E, Clark MU, Hudgens MG, Swanstrom R. Unique Molecular Identifiers and Multiplexing Amplicons Maximize the Utility of Deep Sequencing To Critically Assess Population Diversity in RNA Viruses. ACS Infect Dis 2022;8:2505-14. [PMID: 36326446 DOI: 10.1021/acsinfecdis.2c00319] [Reference Citation Analysis]
|
| 25 |
Suarez P, Alonso JL, Gómez G, Vidal G. Performance of sewage treatment technologies for the removal of Cryptosporidium sp. and Giardia sp.: Toward water circularity. Journal of Environmental Management 2022;324:116320. [DOI: 10.1016/j.jenvman.2022.116320] [Reference Citation Analysis]
|
| 26 |
Limbachiya D, Gupta MK, Aggarwal V. 10 Years of Natural Data Storage. IEEE Trans Mol Biol Multi-Scale Commun 2022;8:263-275. [DOI: 10.1109/tmbmc.2022.3211446] [Reference Citation Analysis]
|
| 27 |
Craven KE, Fischer CG, Jiang L, Pallavajjala A, Lin MT, Eshleman JR. Optimizing Insertion and Deletion Detection Using Next-Generation Sequencing in the Clinical Laboratory. J Mol Diagn 2022;24:1217-31. [PMID: 36162758 DOI: 10.1016/j.jmoldx.2022.08.006] [Reference Citation Analysis]
|
| 28 |
Adedeji JA, Tetteh EK, Opoku Amankwa M, Asante-sackey D, Ofori-frimpong S, Armah EK, Rathilal S, Mohammadi AH, Chetty M. Microbial Bioremediation and Biodegradation of Petroleum Products—A Mini Review. Applied Sciences 2022;12:12212. [DOI: 10.3390/app122312212] [Reference Citation Analysis]
|
| 29 |
Lai A, Soucy A, El Achkar CM, Barkovich AJ, Cao Y, DiStefano M, Evenson M, Guerrini R, Knight D, Lee YS, Mefford HC, Miller DT, Mirzaa G, Mochida G, Rodan LH, Patel M, Smith L, Spencer S, Walsh CA, Yang E, Yuskaitis CJ, Yu T, Poduri A; ClinGen Brain Malformation Variant Curation Expert Panel. The ClinGen Brain Malformation Variant Curation Expert Panel: Rules for somatic variants in AKT3, MTOR, PIK3CA, and PIK3R2. Genet Med 2022;24:2240-8. [PMID: 35997716 DOI: 10.1016/j.gim.2022.07.020] [Reference Citation Analysis]
|
| 30 |
Reyes VP, Kitony JK, Nishiuchi S, Makihara D, Doi K. Utilization of Genotyping-by-Sequencing (GBS) for Rice Pre-Breeding and Improvement: A Review. Life 2022;12:1752. [DOI: 10.3390/life12111752] [Reference Citation Analysis]
|
| 31 |
Geraldes I, Fernandes M, Fraga AG, Osório NS. The impact of single-cell genomics on the field of mycobacterial infection. Front Microbiol 2022;13:989464. [DOI: 10.3389/fmicb.2022.989464] [Reference Citation Analysis]
|
| 32 |
Pervez MT, Hasnain MJU, Abbas SH, Moustafa MF, Aslam N, Shah SSM, Hamid DM. A Comprehensive Review of Performance of Next-Generation Sequencing Platforms. BioMed Research International 2022;2022:1-12. [DOI: 10.1155/2022/3457806] [Reference Citation Analysis]
|
| 33 |
Su Q, Long Y, Wang J, Gou D. CLT-seq as a universal homopolymer-sequencing concept reveals poly(A)-tail-tuned ncRNA regulation.. [DOI: 10.1101/2022.09.11.507502] [Reference Citation Analysis]
|
| 34 |
Jameson SB, Cloherty E, Londono-renteria B, Wesson DM. Chagas Disease in the Southeastern USA. Curr Trop Med Rep. [DOI: 10.1007/s40475-022-00260-x] [Reference Citation Analysis]
|
| 35 |
Hilt EE, Ferrieri P. Next Generation and Other Sequencing Technologies in Diagnostic Microbiology and Infectious Diseases. Genes 2022;13:1566. [DOI: 10.3390/genes13091566] [Reference Citation Analysis]
|
| 36 |
Galli C, Ebranati E, Pellegrinelli L, Airoldi M, Veo C, Della Ventura C, Seiti A, Binda S, Galli M, Zehender G, Pariani E. From Clinical Specimen to Whole Genome Sequencing of A(H3N2) Influenza Viruses: A Fast and Reliable High-Throughput Protocol. Vaccines (Basel) 2022;10. [PMID: 36016246 DOI: 10.3390/vaccines10081359] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 37 |
Ordulu Z, Nardi V. Molecular Detection of Oncogenic Gene Rearrangements. Clinics in Laboratory Medicine 2022. [DOI: 10.1016/j.cll.2022.05.002] [Reference Citation Analysis]
|
| 38 |
Poates A, Truong J, Lindsey R, Griswold T, Williams-Newkirk AJ, Carleton H, Trees E. Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization. Foodborne Pathog Dis 2022. [PMID: 35861967 DOI: 10.1089/fpd.2022.0017] [Reference Citation Analysis]
|
| 39 |
Addanki S, Meas S, Sarli VN, Singh B, Lucci A. Applications of Circulating Tumor Cells and Circulating Tumor DNA in Precision Oncology for Breast Cancers. Int J Mol Sci 2022;23:7843. [PMID: 35887191 DOI: 10.3390/ijms23147843] [Reference Citation Analysis]
|
| 40 |
Tang T, Hutvagner G, Wang W, Li J. Simultaneous compression of multiple error-corrected short-read sets for faster data transmission and better de novo assemblies. Brief Funct Genomics 2022:elac016. [PMID: 35848773 DOI: 10.1093/bfgp/elac016] [Reference Citation Analysis]
|
| 41 |
Cuber P, Chooneea D, Geeves C, Salatino S, Creedy TJ, Griffin C, Sivess L, Barnes I, Price B, Misra R. Comparing the accuracy and efficiency of third generation DNA barcode sequencing: Oxford Nanopore Technologies versus Pacific Biosciences.. [DOI: 10.1101/2022.07.13.499863] [Reference Citation Analysis]
|
| 42 |
Comino A, Antolín-vallespín M, López-benito A, Muñoz G, del Castillo FJ, Vela L, Martínez-castrillo JC, Sánchez-capelo A. TGFB1 rs8179181 polymorphism is reproducibly associated with Parkinson’s disease in a Spanish population.. [DOI: 10.1101/2022.07.09.22277447] [Reference Citation Analysis]
|
| 43 |
Cheng D, Huang S, Chin W, Hung S, Tsai H, Chu JJH, Chao C, Wang J. Impact of Intrahost NS5 Nucleotide Variations on Dengue Virus Replication. Front Microbiol 2022;13:894200. [DOI: 10.3389/fmicb.2022.894200] [Reference Citation Analysis]
|
| 44 |
Bhat KA, Mir RA, Farooq A, Manzoor M, Hami A, Allie KA, Wani SM, Khan MN, Sayyed RZ, Poczai P, Almalki WH, Zargar SM, Shah AA. Advances in Nematode Identification: A Journey from Fundamentals to Evolutionary Aspects. Diversity 2022;14:536. [DOI: 10.3390/d14070536] [Reference Citation Analysis]
|
| 45 |
Dai X, Shen L. Advances and Trends in Omics Technology Development. Front Med 2022;9:911861. [DOI: 10.3389/fmed.2022.911861] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 46 |
Maphosa MN, Steenkamp ET, Kanzi AM, van Wyk S, De Vos L, Santana QC, Duong TA, Wingfield BD. Intra-Species Genomic Variation in the Pine Pathogen Fusarium circinatum. JoF 2022;8:657. [DOI: 10.3390/jof8070657] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 47 |
Pedrini E, Negro A, Di Brino E, Pecoraro V, Sculco C, Abelli E, Gnoli M, Magrelli A, Sangiorgi L, Cicchetti A. Real-World Data and Budget Impact Analysis (BIA): Evaluation of a Targeted Next-Generation Sequencing Diagnostic Approach in Two Orthopedic Rare Diseases. Front Pharmacol 2022;13:785705. [DOI: 10.3389/fphar.2022.785705] [Reference Citation Analysis]
|
| 48 |
P. Okoh M, A. Alli L. Recent Progress in Drug Repurposing Using Protein Variants and Amino Acids in Disease Phenotypes/Disorders. Drug Repurposing - Molecular Aspects and Therapeutic Applications 2022. [DOI: 10.5772/intechopen.102571] [Reference Citation Analysis]
|
| 49 |
Kanaujia R, Biswal M, Angrup A, Ray P. Diagnostic accuracy of the metagenomic next-generation sequencing (mNGS) for detection of bacterial meningoencephalitis: a systematic review and meta-analysis. Eur J Clin Microbiol Infect Dis 2022;41:881-91. [PMID: 35474146 DOI: 10.1007/s10096-022-04445-0] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 50 |
Bhaskaran S, Saikumar C. A Review of Next Generation Sequencing Methods and its Applications in Laboratory Diagnosis. J Pure Appl Microbiol 2022. [DOI: 10.22207/jpam.16.2.45] [Reference Citation Analysis]
|
| 51 |
Bhat GR, Sethi I, Rah B, Kumar R, Afroze D. Innovative in Silico Approaches for Characterization of Genes and Proteins. Front Genet 2022;13:865182. [DOI: 10.3389/fgene.2022.865182] [Reference Citation Analysis]
|
| 52 |
Yooseph S, Tavakoli S. Variational Approximation-Based Model Selection for Microbial Network Inference. J Comput Biol 2022. [PMID: 35549398 DOI: 10.1089/cmb.2021.0595] [Reference Citation Analysis]
|
| 53 |
Gahan PB, Schwarzenbach H, Anker P. The History and Future of Basic and Translational Cell-Free DNA Research at a Glance. Diagnostics 2022;12:1192. [DOI: 10.3390/diagnostics12051192] [Reference Citation Analysis]
|
| 54 |
Schmidt J, Berghaus S, Blessing F, Herbeck H, Blessing J, Schierack P, Rödiger S, Roggenbuck D, Wenzel F. Genotyping of familial Mediterranean fever gene (MEFV)-Single nucleotide polymorphism-Comparison of Nanopore with conventional Sanger sequencing. PLoS One 2022;17:e0265622. [PMID: 35298548 DOI: 10.1371/journal.pone.0265622] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 55 |
Yang X, Patil S, Joshi S, Jamla M, Kumar V. Exploring epitranscriptomics for crop improvement and environmental stress tolerance. Plant Physiology and Biochemistry 2022. [DOI: 10.1016/j.plaphy.2022.04.031] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 56 |
Wadden J, Ravi K, John V, Babila CM, Koschmann C. Cell-Free Tumor DNA (cf-tDNA) Liquid Biopsy: Current Methods and Use in Brain Tumor Immunotherapy. Front Immunol 2022;13:882452. [PMID: 35464472 DOI: 10.3389/fimmu.2022.882452] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 57 |
Rachappanavar V, Padiyal A, Sharma JK, Negi N. Analytical Pipelines for the GBS Analysis. Genotyping by Sequencing for Crop Improvement 2022. [DOI: 10.1002/9781119745686.ch8] [Reference Citation Analysis]
|
| 58 |
Vishnu Prasad S, Mukherjee G, Bobdey S, Kaushik SK, Yadav AK, Teli P, Vaidya R, Karade S, Singh SP. Epidemiological analysis of SARS-COV-2 B.1.617.2 (delta variant) transmission in an educational institute. Med J Armed Forces India 2022. [PMID: 35464626 DOI: 10.1016/j.mjafi.2022.02.008] [Reference Citation Analysis]
|
| 59 |
Pfaff F, Breithaupt A, Rubbenstroth D, Nippert S, Baumbach C, Gerst S, Langner C, Wylezich C, Ebinger A, Höper D, Ulrich RG, Beer M. Revisiting Rustrela Virus: New Cases of Encephalitis and a Solution to the Capsid Enigma. Microbiol Spectr 2022;:e0010322. [PMID: 35384712 DOI: 10.1128/spectrum.00103-22] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 60 |
Smith J, Day RC, Weeks RJ. Next-Generation Bisulfite Sequencing for Targeted DNA Methylation Analysis. Methods Mol Biol 2022;2458:47-62. [PMID: 35103961 DOI: 10.1007/978-1-0716-2140-0_3] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 61 |
Palma F, Mangone I, Janowicz A, Moura A, Chiaverini A, Torresi M, Garofolo G, Criscuolo A, Brisse S, Di Pasquale A, Cammà C, Radomski N. In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes. BMC Genomics 2022;23. [DOI: 10.1186/s12864-022-08437-4] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 62 |
Mohd Yacob A, Muhamad NA, Chang KM, Akmal Hisham H, Mat Yusoff Y, Ibrahim L. Hsa-miR-181a-5p, hsa-miR-182-5p, and hsa-miR-26a-5p as potential biomarkers for BCR-ABL1 among adult chronic myeloid leukemia treated with tyrosine kinase inhibitors at the molecular response. BMC Cancer 2022;22:332. [PMID: 35346116 DOI: 10.1186/s12885-022-09396-5] [Reference Citation Analysis]
|
| 63 |
Zhao D, Wang Q, Meng F, Lu F, Bie X, Lu Z, Lu Y. TetR-Type Regulator Lp_2642 Positively Regulates Plantaricin EF Production Based on Genome-Wide Transcriptome Sequencing of Lactiplantibacillus plantarum 163. J Agric Food Chem . [DOI: 10.1021/acs.jafc.2c00206] [Reference Citation Analysis]
|
| 64 |
Elshikh MS, Ajmal Ali M, Al-Hemaid F, Yong Kim S, Elangbam M, Bahadur Gurung A, Mukherjee P, El-Zaidy M, Lee J. Insights into plastome of Fagonia indica Burm.f. (Zygophyllaceae): organization, annotation and phylogeny. Saudi J Biol Sci 2022;29:1313-21. [PMID: 35280582 DOI: 10.1016/j.sjbs.2021.11.011] [Reference Citation Analysis]
|
| 65 |
A. Ahmed R. Whole Genome Sequencing: A Powerful Tool for Understanding the Diversity of Genotypes and Phenotypes among COVID-19 Infected Patients to Help in Controlling Outbreaks. Biotechnology to Combat COVID-19 2022. [DOI: 10.5772/intechopen.96260] [Reference Citation Analysis]
|
| 66 |
de Oliveira Martins L, Bloomfield S, Stoakes E, Grant AJ, Page AJ, Mather AE. Tatajuba: exploring the distribution of homopolymer tracts. NAR Genom Bioinform 2022;4:lqac003. [PMID: 35118377 DOI: 10.1093/nargab/lqac003] [Reference Citation Analysis]
|
| 67 |
Pourbavarsad MS, Jalalieh BJ, Landes N, Jackson WA. Impact of free ammonia and free nitrous acid on nitritation in membrane aerated bioreactors fed with high strength nitrogen urine dominated wastewater. Journal of Environmental Chemical Engineering 2022;10:107001. [DOI: 10.1016/j.jece.2021.107001] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 11.0] [Reference Citation Analysis]
|
| 68 |
Song P, Wu LR, Yan YH, Zhang JX, Chu T, Kwong LN, Patel AA, Zhang DY. Limitations and opportunities of technologies for the analysis of cell-free DNA in cancer diagnostics. Nat Biomed Eng. [DOI: 10.1038/s41551-021-00837-3] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 6.0] [Reference Citation Analysis]
|
| 69 |
Pradipta A, Kumaheri MA, Wahyudi LD, Susanto AP, Agasi HI, Shankar AH, Sudarmono P. Accelerating Detection of Variants During COVID-19 Surges by Diverse Technological and Public Health Partnerships: A Case Study From Indonesia. Front Genet 2022;13:801332. [DOI: 10.3389/fgene.2022.801332] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 70 |
Parker K, Forman J, Bonheyo G, Knight B, Bartholomew R, Ozanich R, Yeh KB. End-User Perspectives on Using Quantitative Real-Time PCR and Genomic Sequencing in the Field. Trop Med Infect Dis 2022;7:6. [PMID: 35051122 DOI: 10.3390/tropicalmed7010006] [Reference Citation Analysis]
|
| 71 |
Sanchez FM, Jiménez FA, Tenorio AM. Influence of sequencing depth on bacterial classification and abundance in bacterial communities.. [DOI: 10.1101/2022.01.04.474922] [Reference Citation Analysis]
|
| 72 |
Mishra A, Singh PK, Bhandawat A, Sharma V, Sharma V, Singh P, Roy J, Sharma H. Analysis of SSR and SNP markers. Bioinformatics 2022. [DOI: 10.1016/b978-0-323-89775-4.00017-1] [Reference Citation Analysis]
|
| 73 |
Tremblay ÉD, Bilodeau GJ. Biomonitoring of Fungal and Oomycete Plant Pathogens by Using Metabarcoding. Plant Pathology 2022. [DOI: 10.1007/978-1-0716-2517-0_18] [Reference Citation Analysis]
|
| 74 |
Singh NK, Sarkar D. Jute Genome Sequencing: An Indian Initiative. Compendium of Plant Genomes 2022. [DOI: 10.1007/978-3-030-91163-8_10] [Reference Citation Analysis]
|
| 75 |
Rai AK, Borah P, Kataki AC. Molecular Profiling of Gynaecological Cancer and Breast Cancer. Fundamentals in Gynaecologic Malignancy 2022. [DOI: 10.1007/978-981-19-5860-1_2] [Reference Citation Analysis]
|
| 76 |
Thaenkham U, Chaisiri K, Hui En Chan A. Implementation of Genetic Markers from Molecular Systematics to DNA Taxonomy and Field Application. Molecular Systematics of Parasitic Helminths 2022. [DOI: 10.1007/978-981-19-1786-8_14] [Reference Citation Analysis]
|
| 77 |
Rifaie S, Patil V, Jangid K. Advances in sequencing technology, databases, and analyses tools for the assessment of microbial diversity. Microbial Diversity in Hotspots 2022. [DOI: 10.1016/b978-0-323-90148-2.00003-1] [Reference Citation Analysis]
|
| 78 |
Dong Z, Wang Y, Yin D, Hang X, Pu L, Zhang J, Geng J, Chang L. Advanced techniques for gene heterogeneity research: Single‐cell sequencing and on‐chip gene analysis systems. VIEW 2022;3:20210011. [DOI: 10.1002/viw.20210011] [Reference Citation Analysis]
|
| 79 |
Dubey A, Malla MA, Kumar A. Role of Next-Generation Sequencing (NGS) in Understanding the Microbial Diversity. Molecular Genetics and Genomics Tools in Biodiversity Conservation 2022. [DOI: 10.1007/978-981-16-6005-4_16] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 80 |
Mohapatra B, Malhotra H, Saha BK, Dhamale T, Phale PS. Microbial metabolism of aromatic pollutants: High-throughput OMICS and metabolic engineering for efficient bioremediation. Current Developments in Biotechnology and Bioengineering 2022. [DOI: 10.1016/b978-0-323-88504-1.00019-4] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 81 |
Davies OK, Dorey JB, Stevens MI, Gardner MG, Bradford TM, Schwarz MP. Unparalleled mitochondrial heteroplasmy and Wolbachia co-infection in the non-model bee, Amphylaeus morosus. Current Research in Insect Science 2022;2:100036. [DOI: 10.1016/j.cris.2022.100036] [Reference Citation Analysis]
|
| 82 |
El-gawahergy H, Amin DH, Elsayed AF. Mining for NRPS and PKS Genes in Actinobacteria Using Whole-Genome Sequencing and Bioinformatic Tools. Natural Products from Actinomycetes 2022. [DOI: 10.1007/978-981-16-6132-7_15] [Reference Citation Analysis]
|
| 83 |
Pfaff F, Breithaupt A, Rubbenstroth D, Nippert S, Baumbach C, Gerst S, Langner C, Wylezich C, Ebinger A, Höper D, Ulrich RG, Beer M. Revisiting rustrela virus – new cases of encephalitis and a solution to the capsid enigma.. [DOI: 10.1101/2021.12.27.474043] [Reference Citation Analysis]
|
| 84 |
Soni T, Pandit R, Blake D, Joshi C, Joshi M. Comparative analysis of two NGS platforms and different databases for analysis of AMR genes.. [DOI: 10.1101/2021.12.27.474239] [Reference Citation Analysis]
|
| 85 |
Athanasopoulou K, Boti MA, Adamopoulos PG, Skourou PC, Scorilas A. Third-Generation Sequencing: The Spearhead towards the Radical Transformation of Modern Genomics. Life (Basel) 2021;12:30. [PMID: 35054423 DOI: 10.3390/life12010030] [Cited by in Crossref: 8] [Cited by in F6Publishing: 13] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 86 |
Tyazhelova TV, Kuznetsova IL, Andreeva TV, Kunizheva SS, Rogaev EI. Application of Massive Parallel Sequencing Technology in Forensics: Comparative Analysis of Sequencing Platforms. Russ J Genet 2021;57:1430-42. [DOI: 10.1134/s1022795421120127] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 87 |
Chen Z, He X. Application of third-generation sequencing in cancer research. Medical Review 2021;1:150-171. [DOI: 10.1515/mr-2021-0013] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 88 |
Wagner DD, Carleton HA, Trees E, Katz LS. Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks. PeerJ 2021;9:e12446. [PMID: 34900416 DOI: 10.7717/peerj.12446] [Reference Citation Analysis]
|
| 89 |
Bartalucci N, Romagnoli S, Vannucchi AM. A blood drop through the pore: nanopore sequencing in hematology. Trends Genet 2021:S0168-9525(21)00306-1. [PMID: 34906378 DOI: 10.1016/j.tig.2021.11.003] [Reference Citation Analysis]
|
| 90 |
Sudo M, Osakabe M. freqpcr: Estimation of population allele frequency using qPCR ΔΔCq measures from bulk samples. Mol Ecol Resour 2021. [PMID: 34882971 DOI: 10.1111/1755-0998.13554] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 91 |
Yu T, Hu Y, Zhang Y, Zhao R, Yan X, Dayananda B, Wang J, Jiao Y, Li J, Yi X. Whole-Genome Sequencing of Acer catalpifolium Reveals Evolutionary History of Endangered Species. Genome Biol Evol 2021;13:evab271. [PMID: 34878129 DOI: 10.1093/gbe/evab271] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 92 |
Bossé JT, Li Y, Cohen LM, Stegger M, Angen Ø, Lacouture S, Gottschalk M, Lei L, Koene M, Kuhnert P, Bandara AB, Inzana TJ, Holden MTG, Harris D, Oshota O, Maskell DJ, Tucker AW, Wren BW, Rycroft AN, Langford PR, On Behalf Of The BRaDP T Consortium. Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405: comparative analysis with draft genomes for different laboratory stock cultures indicates little genetic variation. Microb Genom 2021;7. [PMID: 34818145 DOI: 10.1099/mgen.0.000687] [Reference Citation Analysis]
|
| 93 |
Raybould MIJ, Rees AR, Deane CM. Current strategies for detecting functional convergence across B-cell receptor repertoires. MAbs 2021;13:1996732. [PMID: 34781829 DOI: 10.1080/19420862.2021.1996732] [Cited by in Crossref: 8] [Cited by in F6Publishing: 3] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 94 |
Li T, Zhang X, Guo L, Qi T, Tang H, Wang H, Qiao X, Zhang M, Zhang B, Feng J, Zuo Z, Zhang Y, Xing C, Wu J. Single-molecule real-time transcript sequencing of developing cotton anthers facilitates genome annotation and fertility restoration candidate gene discovery. Genomics 2021;113:4245-53. [PMID: 34793949 DOI: 10.1016/j.ygeno.2021.11.014] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 95 |
de Lima DC, Medeiros IG, de Cássia Silva-Portela R, da Silva Junior FC, Fassarela Agnez-Lima L, de Souza JES, Batistuzzo de Medeiros SR. Identification of plasmids from Brazilian Chromobacterium violaceum strains. Can J Microbiol 2021;:1-10. [PMID: 34780296 DOI: 10.1139/cjm-2021-0197] [Reference Citation Analysis]
|
| 96 |
Knudsen JK, Michaelsen TY, Bundgaard-Nielsen C, Nielsen RE, Hjerrild S, Leutscher P, Wegener G, Sørensen S. Faecal microbiota transplantation from patients with depression or healthy individuals into rats modulates mood-related behaviour. Sci Rep 2021;11:21869. [PMID: 34750433 DOI: 10.1038/s41598-021-01248-9] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 97 |
Cabarcas F, Galvan-Diaz AL, Arias-Agudelo LM, García-Montoya GM, Daza JM, Alzate JF. Cryptosporidium hominis Phylogenomic Analysis Reveals Separate Lineages With Continental Segregation. Front Genet 2021;12:740940. [PMID: 34721528 DOI: 10.3389/fgene.2021.740940] [Reference Citation Analysis]
|
| 98 |
Vieira A, Moura M, Silva L. Soil metagenomics in grasslands and forests – A review and bibliometric analysis. Applied Soil Ecology 2021;167:104047. [DOI: 10.1016/j.apsoil.2021.104047] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 99 |
Bredeson JV, Mudd AB, Medina-ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J, Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-figueroa G, Khokha MK, Lane M, Philipp I, Laslo M, Hanken J, Kerdivel G, Buisine N, Sachs LM, Buchholz DR, Kwon T, Smith-parker H, Gridi-papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB, Straight AF, Heald R, Hockemeyer D, Harland RM, Rokhsar DS. Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs.. [DOI: 10.1101/2021.10.18.464293] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 100 |
Dev Sareshma S, Subha B. Assessing Host-Pathogen Interaction Networks via RNA-Seq Profiling: A Systems Biology Approach. Applications of RNA-Seq in Biology and Medicine 2021. [DOI: 10.5772/intechopen.96706] [Reference Citation Analysis]
|
| 101 |
Ot O, Vo A, Bf A, Eo A. Antimicrobial Spectrum, Growth/Killing Kinetics, Conventional/Molecular Assay of Characterizing Non-Leguminous Endophytic Bacteria and Fungi from Helianthus annuus, Carica papaya and Lycoperesicum solanum. J Biomed Res Environ Sci 2021;2:1018-1034. [DOI: 10.37871/jbres1345] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 102 |
Pourbavarsad MS, Jalalieh BJ, Harkins C, Sevanthi R, Jackson WA. Nitrogen oxidation and carbon removal from high strength nitrogen habitation wastewater with nitrification in membrane aerated biological reactors. Journal of Environmental Chemical Engineering 2021;9:106271. [DOI: 10.1016/j.jece.2021.106271] [Cited by in Crossref: 9] [Cited by in F6Publishing: 4] [Article Influence: 4.5] [Reference Citation Analysis]
|
| 103 |
Fatani S, Saito Y, Alarawi M, Gojobori T, Mineta K. Genome sequencing and identification of cellulase genes in Bacillus paralicheniformis strains from the Red Sea. BMC Microbiol 2021;21:254. [PMID: 34548024 DOI: 10.1186/s12866-021-02316-w] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 104 |
Cosentino RO, Brink BG, Siegel TN. Allele-specific assembly of a eukaryotic genome corrects apparent frameshifts and reveals a lack of nonsense-mediated mRNA decay. NAR Genom Bioinform 2021;3:lqab082. [PMID: 34541528 DOI: 10.1093/nargab/lqab082] [Reference Citation Analysis]
|
| 105 |
Liu Y, Xu C, Sun Y, Chen X, Dong W, Yang X, Zhou S. Method for quick DNA barcode reference library construction. Ecol Evol 2021;11:11627-38. [PMID: 34522329 DOI: 10.1002/ece3.7788] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 106 |
Sabol A, Joung YJ, VanTubbergen C, Ale J, Ribot EM, Trees E. Assessment of Genetic Stability During Serial In Vitro Passage and In Vivo Carriage. Foodborne Pathog Dis 2021. [PMID: 34520233 DOI: 10.1089/fpd.2021.0029] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 107 |
Kanwar N, Blanco C, Chen IA, Seelig B. PacBio sequencing output increased through uniform and directional fivefold concatenation. Sci Rep 2021;11:18065. [PMID: 34508117 DOI: 10.1038/s41598-021-96829-z] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 108 |
Probst CM, Melo MFAD, Pavoni DP, Toledo MJO, Galdino TS, Brandão AA, Britto C, Krieger MA. A new Trypanosoma cruzi genotyping method enables high resolution evolutionary analyses. Mem Inst Oswaldo Cruz 2021;116:e200538. [PMID: 34468503 DOI: 10.1590/0074-02760200538] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 109 |
de Vrieze E, de Bruijn SE, Reurink J, Broekman S, van de Riet V, Aben M, Kremer H, van Wijk E. Efficient Generation of Knock-In Zebrafish Models for Inherited Disorders Using CRISPR-Cas9 Ribonucleoprotein Complexes. Int J Mol Sci 2021;22:9429. [PMID: 34502338 DOI: 10.3390/ijms22179429] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 110 |
Yang Y, Wang T, Chen J, Wu L, Wu X, Zhang W, Luo J, Xia J, Meng Z, Liu X. Whole-genome sequencing of brown-marbled grouper (Epinephelus fuscoguttatus) provides insights into adaptive evolution and growth differences. Mol Ecol Resour 2021. [PMID: 34455708 DOI: 10.1111/1755-0998.13494] [Cited by in Crossref: 3] [Cited by in F6Publishing: 5] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 111 |
Ijoma GN, Heri SM, Matambo TS, Tekere M. Trends and Applications of Omics Technologies to Functional Characterisation of Enzymes and Protein Metabolites Produced by Fungi. J Fungi (Basel) 2021;7:700. [PMID: 34575737 DOI: 10.3390/jof7090700] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 112 |
Helfer-Hungerbuehler AK, Shah J, Meili T, Boenzli E, Li P, Hofmann-Lehmann R. Adeno-Associated Vector-Delivered CRISPR/SaCas9 System Reduces Feline Leukemia Virus Production In Vitro. Viruses 2021;13:1636. [PMID: 34452500 DOI: 10.3390/v13081636] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 113 |
Tvedte ES, Michalski J, Cheng S, Patkus RS, Tallon LJ, Sadzewicz L, Bruno VM, Silva JC, Rasko DA, Dunning Hotopp JC. Evaluation of a high-throughput, cost-effective Illumina library preparation kit. Sci Rep 2021;11:15925. [PMID: 34354114 DOI: 10.1038/s41598-021-94911-0] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 114 |
Jain S, Saxena A, Hesarur S, Bhadhadhara K, Bharti N, Kasibhatla SM, Sonavane U, Joshi R. GenoVault: a cloud based genomics repository. BioData Min 2021;14:36. [PMID: 34325724 DOI: 10.1186/s13040-021-00268-5] [Reference Citation Analysis]
|
| 115 |
Vogel M, Utpatel C, Corbett C, Kohl TA, Iskakova A, Ahmedov S, Antonenka U, Dreyer V, Ibrahimova A, Kamarli C, Kosimova D, Mohr V, Sahalchyk E, Sydykova M, Umetalieva N, Kadyrov A, Kalmambetova G, Niemann S, Hoffmann H. Implementation of whole genome sequencing for tuberculosis diagnostics in a low-middle income, high MDR-TB burden country. Sci Rep 2021;11:15333. [PMID: 34321545 DOI: 10.1038/s41598-021-94297-z] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 116 |
Gahamanyi N, Song DG, Yoon KY, Mboera LEG, Matee MI, Mutangana D, Komba EVG, Pan CH, Amachawadi RG. Genomic Characterization of Fluoroquinolone-Resistant Thermophilic Campylobacter Strains Isolated from Layer Chicken Feces in Gangneung, South Korea by Whole-Genome Sequencing. Genes (Basel) 2021;12:1131. [PMID: 34440305 DOI: 10.3390/genes12081131] [Reference Citation Analysis]
|
| 117 |
Kim Y, Kim KH, Kim B, Shin S, Lee KA. Evaluation of a hybridization capture-based hereditary cancer panel for the ion semiconductor-based next-generation sequencing system. Clin Chim Acta 2021;521:223-8. [PMID: 34293297 DOI: 10.1016/j.cca.2021.07.018] [Reference Citation Analysis]
|
| 118 |
Sutton JM, Millwood JD, Case McCormack A, Fierst JL. Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies. GigaByte 2021;2021:gigabyte27. [PMID: 36824342 DOI: 10.46471/gigabyte.27] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 119 |
Knyazev S, Tsyvina V, Shankar A, Melnyk A, Artyomenko A, Malygina T, Porozov YB, Campbell EM, Switzer WM, Skums P, Mangul S, Zelikovsky A. Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Nucleic Acids Res 2021:gkab576. [PMID: 34214168 DOI: 10.1093/nar/gkab576] [Cited by in Crossref: 17] [Cited by in F6Publishing: 18] [Article Influence: 8.5] [Reference Citation Analysis]
|
| 120 |
Mathobo P, Matume ND, Bessong PO. Application of next generation sequencing in HIV drug resistance studies in Africa, 2005–2019: A systematic review. Scientific African 2021;12:e00829. [DOI: 10.1016/j.sciaf.2021.e00829] [Reference Citation Analysis]
|
| 121 |
Shikov A, Tsay V, Fedyakov M, Eismont Y, Rudnik A, Urasov S, Sherbak S, Glotov O. The application of Nanopore sequencing for variant calling on the human mitochondrial DNA. BioComm 2021;66. [DOI: 10.21638/spbu03.2021.202] [Reference Citation Analysis]
|
| 122 |
Yang X, He L, Yan S, Chen X, Que G. The impact of caries status on supragingival plaque and salivary microbiome in children with mixed dentition: a cross-sectional survey. BMC Oral Health 2021;21:319. [PMID: 34172026 DOI: 10.1186/s12903-021-01683-0] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 123 |
Gunasekera S, Abraham S, Stegger M, Pang S, Wang P, Sahibzada S, O'Dea M. Evaluating coverage bias in next-generation sequencing of Escherichia coli. PLoS One 2021;16:e0253440. [PMID: 34166413 DOI: 10.1371/journal.pone.0253440] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 124 |
Roslee AFA, Ahmad SA, Gomez-fuentes C, Shaharuddin NA, Khalil KA, Zulkharnain A. Scientometric Analysis of Diesel Pollutions in Antarctic Territories: A Review of Causes and Potential Bioremediation Approaches. Sustainability 2021;13:7064. [DOI: 10.3390/su13137064] [Reference Citation Analysis]
|
| 125 |
Kamai T, Higashi S, Murakami S, Arai K, Namatame T, Kijima T, Abe H, Jamiyan T, Ishida K, Shirataki H, Yoshida KI. Single nucleotide variants of succinate dehydrogenase A gene in renal cell carcinoma. Cancer Sci 2021;112:3375-87. [PMID: 34014604 DOI: 10.1111/cas.14977] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 126 |
Tenedini E, Celestini F, Iapicca P, Marino M, Castellano S, Artuso L, Biagiarelli F, Cortesi L, Toss A, Barbieri E, Roncucci L, Pedroni M, Manfredini R, Luppi M, Trenti T, Tagliafico E. Automated capture-based NGS workflow: one thousand patients experience in a clinical routine framework. Diagnosis (Berl) 2021. [PMID: 34142509 DOI: 10.1515/dx-2021-0051] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 127 |
Mthethwa NP, Amoah ID, Reddy P, Bux F, Kumari S. A review on application of next-generation sequencing methods for profiling of protozoan parasites in water: Current methodologies, challenges, and perspectives. J Microbiol Methods 2021;187:106269. [PMID: 34129906 DOI: 10.1016/j.mimet.2021.106269] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 128 |
Meggendorfer M, Jobanputra V, Wrzeszczynski KO, Roepman P, de Bruijn E, Cuppen E, Buttner R, Caldas C, Grimmond S, Mullighan CG, Elemento O, Rosenquist R, Schuh A, Haferlach T. Analytical demands to use whole-genome sequencing in precision oncology. Semin Cancer Biol 2021:S1044-579X(21)00179-6. [PMID: 34119643 DOI: 10.1016/j.semcancer.2021.06.009] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 129 |
de Oliveira Martins L, Bloomfield S, Stoakes E, Grant A, Page AJ, Mather AE. Tatajuba ― Exploring the distribution of homopolymer tracts.. [DOI: 10.1101/2021.06.02.446710] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 130 |
Zhuo X, Zheng T, Li S, Zhang Z, Zhang M, Zhang Y, Ahmad S, Sun L, Wang J, Cheng T, Zhang Q. Identification of the PmWEEP locus controlling weeping traits in Prunus mume through an integrated genome-wide association study and quantitative trait locus mapping. Hortic Res 2021;8:131. [PMID: 34059642 DOI: 10.1038/s41438-021-00573-4] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 131 |
Ransom EM, Potter RF, Dantas G, Burnham CD. Genomic Prediction of Antimicrobial Resistance: Ready or Not, Here It Comes! Clin Chem 2020;66:1278-89. [PMID: 32918462 DOI: 10.1093/clinchem/hvaa172] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 132 |
Lincoln SE, Hambuch T, Zook JM, Bristow SL, Hatchell K, Truty R, Kennemer M, Shirts BH, Fellowes A, Chowdhury S, Klee EW, Mahamdallie S, Cleveland MH, Vallone PM, Ding Y, Seal S, DeSilva W, Tomson FL, Huang C, Garlick RK, Rahman N, Salit M, Kingsmore SF, Ferber MJ, Aradhya S, Nussbaum RL. One in seven pathogenic variants can be challenging to detect by NGS: an analysis of 450,000 patients with implications for clinical sensitivity and genetic test implementation. Genet Med 2021. [PMID: 34007000 DOI: 10.1038/s41436-021-01187-w] [Cited by in Crossref: 16] [Cited by in F6Publishing: 18] [Article Influence: 8.0] [Reference Citation Analysis]
|
| 133 |
Kiefer JST, Batsukh S, Bauer E, Hirota B, Weiss B, Wierz JC, Fukatsu T, Kaltenpoth M, Engl T. Inhibition of a nutritional endosymbiont by glyphosate abolishes mutualistic benefit on cuticle synthesis in Oryzaephilus surinamensis. Commun Biol 2021;4:554. [PMID: 33976379 DOI: 10.1038/s42003-021-02057-6] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 5.5] [Reference Citation Analysis]
|
| 134 |
Motyka-Pomagruk A, Zoledowska S, Kabza M, Lojkowska E. PacBio-Based Protocol for Bacterial Genome Assembly. Methods Mol Biol 2021;2242:3-14. [PMID: 33961214 DOI: 10.1007/978-1-0716-1099-2_1] [Reference Citation Analysis]
|
| 135 |
Satora M, Rząsa A, Rypuła K, Płoneczka-janeczko K. Model research of the pig’s microbiome based on “One Health” concept in the light of the shared human and animal health. Postepy Hig Med Dosw 2021;75:297-303. [DOI: 10.5604/01.3001.0014.8758] [Reference Citation Analysis]
|
| 136 |
Yang C, Peng C, Jin H, You L, Wang J, Xu H, Sun Z. Comparison of the composition and function of the gut microbiome in herdsmen from two pasture regions, Hongyuan and Xilingol. Food Sci Nutr 2021;9:3258-68. [PMID: 34136190 DOI: 10.1002/fsn3.2290] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 137 |
Kerkhof LJ. Is Oxford Nanopore sequencing ready for analyzing complex microbiomes? FEMS Microbiol Ecol 2021;97:fiab001. [PMID: 33444433 DOI: 10.1093/femsec/fiab001] [Cited by in Crossref: 11] [Cited by in F6Publishing: 13] [Article Influence: 5.5] [Reference Citation Analysis]
|
| 138 |
Garcia-Garcia S, Cortese MF, Rodríguez-Algarra F, Tabernero D, Rando-Segura A, Quer J, Buti M, Rodríguez-Frías F. Next-generation sequencing for the diagnosis of hepatitis B: current status and future prospects. Expert Rev Mol Diagn 2021;21:381-96. [PMID: 33880971 DOI: 10.1080/14737159.2021.1913055] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 139 |
Cosentino R, Brink B, Siegel T. A phased genome assembly for allele-specific analysis in Trypanosoma brucei.. [DOI: 10.1101/2021.04.13.439624] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 140 |
García NC, Robinson WD. Current and Forthcoming Approaches for Benchmarking Genetic and Genomic Diversity. Front Ecol Evol 2021;9:622603. [DOI: 10.3389/fevo.2021.622603] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 141 |
Vestergaard LK, Oliveira DNP, Høgdall CK, Høgdall EV. Next Generation Sequencing Technology in the Clinic and Its Challenges. Cancers (Basel) 2021;13:1751. [PMID: 33916923 DOI: 10.3390/cancers13081751] [Cited by in Crossref: 10] [Cited by in F6Publishing: 11] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 142 |
Wani GA, Khan MA, Dar MA, Shah MA, Reshi ZA. Next Generation High Throughput Sequencing to Assess Microbial Communities: An Application Based on Water Quality. Bull Environ Contam Toxicol 2021;106:727-33. [PMID: 33774727 DOI: 10.1007/s00128-021-03195-7] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 3.5] [Reference Citation Analysis]
|
| 143 |
Debelius JW, Robeson M, Hugerth LW, Boulund F, Ye W, Engstrand L. A comparison of approaches to scaffolding multiple regions along the 16S rRNA gene for improved resolution.. [DOI: 10.1101/2021.03.23.436606] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 144 |
Heo Y, Manikandan G, Ramachandran A, Chen D. Comprehensive Evaluation of Error-Correction Methodologies for Genome Sequencing Data. Bioinformatics 2021. [DOI: 10.36255/exonpublications.bioinformatics.2021.ch6] [Reference Citation Analysis]
|
| 145 |
Xu Z, Green B, Benoit N, Sobel JD, Schatz MC, Wheelan S, Cormack BP. Cell wall protein variation, break-induced replication, and subtelomere dynamics in Candida glabrata. Mol Microbiol 2021;116:260-76. [PMID: 33713372 DOI: 10.1111/mmi.14707] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 3.5] [Reference Citation Analysis]
|
| 146 |
Westaway JAF, Huerlimann R, Miller CM, Kandasamy Y, Norton R, Rudd D. Methods for exploring the faecal microbiome of premature infants: a review. Matern Health Neonatol Perinatol 2021;7:11. [PMID: 33685524 DOI: 10.1186/s40748-021-00131-9] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 147 |
Casanova A, Maroso F, Blanco A, Hermida M, Ríos N, García G, Manuzzi A, Zane L, Verissimo A, García-Marín JL, Bouza C, Vera M, Martínez P. Low impact of different SNP panels from two building-loci pipelines on RAD-Seq population genomic metrics: case study on five diverse aquatic species. BMC Genomics 2021;22:150. [PMID: 33653268 DOI: 10.1186/s12864-021-07465-w] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 148 |
Nassirpour S, Vahid A. Embedded Codes for Reassembling Non-Overlapping Random DNA Fragments. IEEE Trans Mol Biol Multi-Scale Commun 2021;7:40-50. [DOI: 10.1109/tmbmc.2020.3035370] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 149 |
Doan RN, Miller MB, Kim SN, Rodin RE, Ganz J, Bizzotto S, Morillo KS, Huang AY, Digumarthy R, Zemmel Z, Walsh CA. MIPP-Seq: ultra-sensitive rapid detection and validation of low-frequency mosaic mutations. BMC Med Genomics 2021;14:47. [PMID: 33579278 DOI: 10.1186/s12920-021-00893-3] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 150 |
Bravo-Egana V, Sanders H, Chitnis N. New challenges, new opportunities: Next generation sequencing and its place in the advancement of HLA typing. Hum Immunol 2021;82:478-87. [PMID: 33551127 DOI: 10.1016/j.humimm.2021.01.010] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 151 |
Conte C, Rotini A, Manfra L, D’andrea M, Winters G, Migliore L. The Seagrass Holobiont: What We Know and What We Still Need to Disclose for Its Possible Use as an Ecological Indicator. Water 2021;13:406. [DOI: 10.3390/w13040406] [Cited by in Crossref: 9] [Cited by in F6Publishing: 10] [Article Influence: 4.5] [Reference Citation Analysis]
|
| 152 |
Garner E, Davis BC, Milligan E, Blair MF, Keenum I, Maile-Moskowitz A, Pan J, Gnegy M, Liguori K, Gupta S, Prussin AJ 2nd, Marr LC, Heath LS, Vikesland PJ, Zhang L, Pruden A. Next generation sequencing approaches to evaluate water and wastewater quality. Water Res 2021;194:116907. [PMID: 33610927 DOI: 10.1016/j.watres.2021.116907] [Cited by in Crossref: 23] [Cited by in F6Publishing: 25] [Article Influence: 11.5] [Reference Citation Analysis]
|
| 153 |
Briggs EM, Marques CA, Reis-Cunha J, Black J, Campbell S, Damasceno J, Bartholomeu D, Crouch K, McCulloch R. Next-Generation Analysis of Trypanosomatid Genome Stability and Instability. Methods Mol Biol 2020;2116:225-62. [PMID: 32221924 DOI: 10.1007/978-1-0716-0294-2_15] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 154 |
Jiang L, Zokaee F. EXMA: A Genomics Accelerator for Exact-Matching. 2021 IEEE International Symposium on High-Performance Computer Architecture (HPCA) 2021. [DOI: 10.1109/hpca51647.2021.00041] [Reference Citation Analysis]
|
| 155 |
Sukser V, Rokić F, Barbarić L, Korolija M. Assessment of Illumina® Human mtDNA Genome assay: workflow evaluation with development of analysis and interpretation guidelines. Int J Legal Med 2021;135:1161-78. [PMID: 33511452 DOI: 10.1007/s00414-021-02508-z] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 156 |
Browne PD, Nielsen TK, Kot W, Aggerholm A, Gilbert MTP, Puetz L, Rasmussen M, Zervas A, Hansen LH. GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms. Gigascience 2020;9:giaa008. [PMID: 32052832 DOI: 10.1093/gigascience/giaa008] [Cited by in Crossref: 54] [Cited by in F6Publishing: 56] [Article Influence: 27.0] [Reference Citation Analysis]
|
| 157 |
Modlin SJ, Robinhold C, Morrissey C, Mitchell SN, Ramirez-Busby SM, Shmaya T, Valafar F. Exact mapping of Illumina blind spots in the Mycobacterium tuberculosis genome reveals platform-wide and workflow-specific biases. Microb Genom 2021;7. [PMID: 33502304 DOI: 10.1099/mgen.0.000465] [Cited by in Crossref: 4] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 158 |
Yik MH, Lo YT, Lin X, Sun W, Chan TF, Shaw PC. Authentication of Hedyotis products by adaptor ligation-mediated PCR and metabarcoding. J Pharm Biomed Anal 2021;196:113920. [PMID: 33549873 DOI: 10.1016/j.jpba.2021.113920] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 159 |
Puchtler TJ, Johnson K, Palmer RN, Talbot EL, Ibbotson LA, Powalowska PK, Knox R, Shibahara A, M S Cunha P, Newell OJ, Wu M, Chana J, Athanasopoulou EN, Waeber AM, Stolarek M, Silva AL, Mordaka JM, Haggis-Powell M, Xyrafaki C, Bush J, Topkaya IS, Sosna M, Ingham RJ, Huckvale T, Negrea A, Breiner B, Šlikas J, Kelly DJ, Dunning AJ, Bell NM, Dethlefsen M, Love DM, Dear PH, Kuleshova J, Podd GJ, Isaac TH, Balmforth BW, Frayling CA. Single-molecule DNA sequencing of widely varying GC-content using nucleotide release, capture and detection in microdroplets. Nucleic Acids Res 2020;48:e132. [PMID: 33152076 DOI: 10.1093/nar/gkaa987] [Reference Citation Analysis]
|
| 160 |
Brenner ED, Scheid PE, DeGrazia J, Geltzeiler AR, Katari MS. Using the Integrated Genome Viewer to reveal amplicon-derived polymorphism enriched at the phenylthiocarbamide locus in the teaching lab. Biochem Mol Biol Educ 2021;49:361-71. [PMID: 33426769 DOI: 10.1002/bmb.21479] [Reference Citation Analysis]
|
| 161 |
Cai W, Tang F, Wang Y, Zhang Z, Xue Y, Zhao X, Guo Z, Shan C. Bacterial diversity and flavor profile of Zha-Chili, a traditional fermented food in China. Food Res Int 2021;141:110112. [PMID: 33641979 DOI: 10.1016/j.foodres.2021.110112] [Cited by in Crossref: 26] [Cited by in F6Publishing: 28] [Article Influence: 13.0] [Reference Citation Analysis]
|
| 162 |
Hampton M, Galey M, Smoniewski C, Zimmer SL. Probabilistic models of biological enzymatic polymerization. PLoS One 2021;16:e0244858. [PMID: 33406128 DOI: 10.1371/journal.pone.0244858] [Reference Citation Analysis]
|
| 163 |
Flaherty BR, Barratt J, Lane M, Talundzic E, Bradbury RS. Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing. Microbiome 2021;9:1. [PMID: 33388088 DOI: 10.1186/s40168-020-00939-1] [Cited by in Crossref: 32] [Cited by in F6Publishing: 43] [Article Influence: 16.0] [Reference Citation Analysis]
|
| 164 |
Miao H, Sun Y, Wang L, Zhang H. Strategies and Tools for Sequencing of the Sesame Genome. Compendium of Plant Genomes 2021. [DOI: 10.1007/978-3-319-98098-0_12] [Reference Citation Analysis]
|
| 165 |
Kundu K, Sreekrishnan T, Sharma S. Biological wastewater treatment to achieve pollution control and resource recovery: Role of anaerobic digestion. Microbial Ecology of Wastewater Treatment Plants 2021. [DOI: 10.1016/b978-0-12-822503-5.00016-3] [Reference Citation Analysis]
|
| 166 |
Molecular Biology Techniques. Advances in Environmental Engineering and Green Technologies 2021. [DOI: 10.4018/978-1-7998-4312-2.ch012] [Reference Citation Analysis]
|
| 167 |
Gupta MK, Gouda G, Sabarinathan S, Donde R, Vadde R, Behera L. Mapping Algorithms in High-Throughput Sequencing. Bioinformatics in Rice Research 2021. [DOI: 10.1007/978-981-16-3993-7_14] [Reference Citation Analysis]
|
| 168 |
Mitchell M, Marshall H, Nguyen S, Macori G, Fanning S. The Genomics Revolution: Agri-Food Research in the 21st Century. Comprehensive Foodomics 2021. [DOI: 10.1016/b978-0-08-100596-5.22687-5] [Reference Citation Analysis]
|
| 169 |
Prasad A, Bhargava H, Gupta A, Shukla N, Rajagopal S, Gupta S, Sharma A, Valadi J, Nigam V, Suravajhala P. Next Generation Sequencing. Advances in Bioinformatics 2021. [DOI: 10.1007/978-981-33-6191-1_14] [Reference Citation Analysis]
|
| 170 |
Saleem H, Mohsin H, Asif A, Tanvir R, Rehman Y. Metagenomics in Deciphering Microbial Communities Associated with Medicinal Plants. Environmental and Microbial Biotechnology 2021. [DOI: 10.1007/978-981-15-6949-4_3] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 171 |
Hayrabedyan S, Kostova P, Zlatkov V, Todorova K. Single-cell transcriptomics in the context of long-read nanopore sequencing. Biotechnology & Biotechnological Equipment 2021;35:1439-1451. [DOI: 10.1080/13102818.2021.1988868] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 172 |
Sangannavar PA, Kumar JS, Subrahmanyam G, Kutala S. Genomics and omics tools to assess complex microbial communities in silkworms: A paradigm shift towards translational research. Methods in Microbiology 2021. [DOI: 10.1016/bs.mim.2021.04.007] [Reference Citation Analysis]
|
| 173 |
Torres S, Dailey Y, White K. Application of Biomedical Molecular Techniques in Environmental Sciences. Practical Applications of Medical Geology 2021. [DOI: 10.1007/978-3-030-53893-4_10] [Reference Citation Analysis]
|
| 174 |
Edera AA, Sanchez-Puerta MV. Computational Detection of Plant RNA Editing Events. Methods Mol Biol 2021;2181:13-34. [PMID: 32729072 DOI: 10.1007/978-1-0716-0787-9_2] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 175 |
Forsythe B, Melia L, Harbison S. Methods for the analysis of mitochondrial DNA. WIREs Forensic Sci 2021;3. [DOI: 10.1002/wfs2.1388] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 176 |
Urrea-valencia S, Melo ALDA, Gonçalves DRP, Galvão CW, Etto RM. Molecular Techniques to Study Microbial Wastewater Communities. Braz arch biol technol 2021;64:e21200193. [DOI: 10.1590/1678-4324-2021200193] [Reference Citation Analysis]
|
| 177 |
Cheng B, Henry RJ. Coffee Bean Transcriptome. Comprehensive Foodomics 2021. [DOI: 10.1016/b978-0-08-100596-5.22736-4] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 178 |
Bharti R, Grimm DG. Design and Analysis of RNA Sequencing Data. Next Generation Sequencing and Data Analysis 2021. [DOI: 10.1007/978-3-030-62490-3_11] [Reference Citation Analysis]
|
| 179 |
Cortes-figueiredo F, Morais VA, Pinheiro H. From Bedside to Bench: Methods in Precision Medicine. Precision Medicine in Stroke 2021. [DOI: 10.1007/978-3-030-70761-3_12] [Reference Citation Analysis]
|
| 180 |
Mehta S, Singh B, Patra A, Tripathi A, Easwaran M, Choudhary JR, Choudhary M, Aggarwal S. Maize microbiome: current insights for the sustainable agriculture. Microbiomes and Plant Health 2021. [DOI: 10.1016/b978-0-12-819715-8.00009-4] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 3.5] [Reference Citation Analysis]
|
| 181 |
Sharma A, Vashistt J, Shrivastava R. Next-generation omics technologies to explore microbial diversity. Microbes in Land Use Change Management 2021. [DOI: 10.1016/b978-0-12-824448-7.00026-7] [Reference Citation Analysis]
|
| 182 |
Sharma P, Sharma BS, Verma RJ. A Guide to RNAseq Data Analysis Using Bioinformatics Approaches. Advances in Bioinformatics 2021. [DOI: 10.1007/978-981-33-6191-1_12] [Reference Citation Analysis]
|
| 183 |
Ahmad F, Alam A, Kumari I, Singh S, Rani A, Ehtram A, Suhasini S, Samal J, Ehtesham NZ. Next Generation Sequencing: Opportunities and Challenges in Tuberculosis Research. Integrated Omics Approaches to Infectious Diseases 2021. [DOI: 10.1007/978-981-16-0691-5_2] [Reference Citation Analysis]
|
| 184 |
Hoang NV, Henry RJ. Iso-Seq Long Read Transcriptome Sequencing. Comprehensive Foodomics 2021. [DOI: 10.1016/b978-0-08-100596-5.22729-7] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 185 |
Willsey AJ, Morris MT. Next-Generation Sequencing. Encyclopedia of Autism Spectrum Disorders 2021. [DOI: 10.1007/978-3-319-91280-6_1986] [Reference Citation Analysis]
|
| 186 |
Chellappan M, Ranjith MT. Metagenomic Approaches for Insect Symbionts. Microbial Approaches for Insect Pest Management 2021. [DOI: 10.1007/978-981-16-3595-3_6] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 187 |
Porter JS. DNA Read Feature Importance Using Machine Learning for Read Alignment Categories. Computational Advances in Bio and Medical Sciences 2021. [DOI: 10.1007/978-3-030-79290-9_1] [Reference Citation Analysis]
|
| 188 |
Duckworth EEM, Romoser KR, Ott JA, Deiss TC, Gulland FMD, Criscitiello MF. Using PacBio SMRT data for identification of class I MHC alleles in a wildlife species, Zalophus californianus (California sea lion). Infect Genet Evol 2021;88:104700. [PMID: 33387691 DOI: 10.1016/j.meegid.2020.104700] [Reference Citation Analysis]
|
| 189 |
Woerner AE, Mandape S, King JL, Muenzler M, Crysup B, Budowle B. Reducing noise and stutter in short tandem repeat loci with unique molecular identifiers. Forensic Sci Int Genet 2021;51:102459. [PMID: 33429137 DOI: 10.1016/j.fsigen.2020.102459] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 190 |
Wang Y, Cai W, Wang W, Shu N, Zhang Z, Hou Q, Shan C, Guo Z. Analysis of microbial diversity and functional differences in different types of high-temperature Daqu. Food Sci Nutr 2021;9:1003-16. [PMID: 33598183 DOI: 10.1002/fsn3.2068] [Cited by in Crossref: 22] [Cited by in F6Publishing: 23] [Article Influence: 7.3] [Reference Citation Analysis]
|
| 191 |
Vanni I, Casula M, Pastorino L, Manca A, Dalmasso B, Andreotti V, Pisano M, Colombino M, Pfeffer U, Tanda ET, Rozzo C, Paliogiannis P, Cossu A, Ghiorzo P, Palmieri G; Italian Association for Cancer Research (AIRC) Study Group., Italian Melanoma Intergroup (IMI). Quality assessment of a clinical next-generation sequencing melanoma panel within the Italian Melanoma Intergroup (IMI). Diagn Pathol 2020;15:143. [PMID: 33317587 DOI: 10.1186/s13000-020-01052-5] [Reference Citation Analysis]
|
| 192 |
Juang JJ, Lu TP, Su MW, Lin CW, Yang JH, Chu HW, Chen CH, Hsiao YW, Lee CY, Chiang LM, Yu QY, Hsiao CK, Chen CJ, Wu PE, Pai CH, Chuang EY, Shen CY. Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine. J Adv Res 2021;30:147-58. [PMID: 34026292 DOI: 10.1016/j.jare.2020.12.003] [Cited by in Crossref: 5] [Cited by in F6Publishing: 7] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 193 |
Hong M, Tao S, Zhang L, Diao LT, Huang X, Huang S, Xie SJ, Xiao ZD, Zhang H. RNA sequencing: new technologies and applications in cancer research. J Hematol Oncol 2020;13:166. [PMID: 33276803 DOI: 10.1186/s13045-020-01005-x] [Cited by in Crossref: 73] [Cited by in F6Publishing: 86] [Article Influence: 24.3] [Reference Citation Analysis]
|
| 194 |
Hai X, Li Y, Zhu C, Song W, Cao J, Bi S. DNA-based label-free electrochemical biosensors: From principles to applications. TrAC Trends in Analytical Chemistry 2020;133:116098. [DOI: 10.1016/j.trac.2020.116098] [Cited by in Crossref: 43] [Cited by in F6Publishing: 26] [Article Influence: 14.3] [Reference Citation Analysis]
|
| 195 |
Li N, Meng Z, Tao M, Wang Y, Zhang Y, Li S, Gao W, Deng C. Comparative transcriptome analysis of male and female flowers in Spinacia oleracea L. BMC Genomics 2020;21:850. [PMID: 33256615 DOI: 10.1186/s12864-020-07277-4] [Cited by in Crossref: 8] [Cited by in F6Publishing: 9] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 196 |
Wilpiszeski RL, Sherwood Lollar B, Warr O, House CH. In Situ Growth of Halophilic Bacteria in Saline Fracture Fluids from 2.4 km below Surface in the Deep Canadian Shield. Life (Basel) 2020;10:E307. [PMID: 33255232 DOI: 10.3390/life10120307] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 197 |
Gillingham MAF, Montero BK, Wihelm K, Grudzus K, Sommer S, Santos PSC. A novel workflow to improve genotyping of multigene families in wildlife species: An experimental set-up with a known model system. Mol Ecol Resour 2021;21:982-98. [PMID: 33113273 DOI: 10.1111/1755-0998.13290] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 198 |
Lee N, Park MJ, Song W, Jeon K, Jeong S. Currently Applied Molecular Assays for Identifying ESR1 Mutations in Patients with Advanced Breast Cancer. Int J Mol Sci 2020;21:E8807. [PMID: 33233830 DOI: 10.3390/ijms21228807] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 199 |
Su R, Qiao X, Gao Y, Li X, Jiang W, Chen W, Fan Y, Zheng B, Zhang Y, Liu Z, Wang R, Wang Z, Wang Z, Wan W, Dong Y, Li J. Draft Genome of the European Mouflon (Ovis orientalis musimon). Front Genet 2020;11:533611. [PMID: 33329689 DOI: 10.3389/fgene.2020.533611] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 200 |
Gwak HJ, Rho M. Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human Microbiomes. Front Microbiol 2020;11:570825. [PMID: 33262743 DOI: 10.3389/fmicb.2020.570825] [Cited by in Crossref: 6] [Cited by in F6Publishing: 7] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 201 |
Dhorne-Pollet S, Barrey E, Pollet N. A new method for long-read sequencing of animal mitochondrial genomes: application to the identification of equine mitochondrial DNA variants. BMC Genomics 2020;21:785. [PMID: 33176683 DOI: 10.1186/s12864-020-07183-9] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 202 |
Li SJ, Zhang X, Lukeš J, Li BQ, Wang JF, Qu LH, Hide G, Lai DH, Lun ZR. Novel organization of mitochondrial minicircles and guide RNAs in the zoonotic pathogen Trypanosoma lewisi. Nucleic Acids Res 2020;48:9747-61. [PMID: 32853372 DOI: 10.1093/nar/gkaa700] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 203 |
Liu X, Tao T, Zhao L, Li G, Yang L. Molecular diagnosis based on comprehensive genetic testing in 800 Chinese families with non-syndromic inherited retinal dystrophies. Clin Exp Ophthalmol 2021;49:46-59. [PMID: 33090715 DOI: 10.1111/ceo.13875] [Cited by in Crossref: 12] [Cited by in F6Publishing: 16] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 204 |
Truelsen D, Pereira V, Phillips C, Morling N, Børsting C. Evaluation of a custom GeneRead™ massively parallel sequencing assay with 210 ancestry informative SNPs using the Ion S5™ and MiSeq platforms. Forensic Sci Int Genet 2021;50:102411. [PMID: 33176271 DOI: 10.1016/j.fsigen.2020.102411] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 205 |
Carlisle LA, Turk T, Metzner KJ, Mbunkah HA, Shah C, Böni J, Huber M, Braun DL, Fehr J, Salazar-Vizcaya L, Rauch A, Yerly S, Nguyen A, Cavassini M, Stoeckle M, Vernazza P, Bernasconi E, Günthard HF, Kouyos RD. HCV Genetic Diversity Can Be Used to Infer Infection Recency and Time since Infection. Viruses 2020;12:E1241. [PMID: 33142675 DOI: 10.3390/v12111241] [Reference Citation Analysis]
|
| 206 |
Bruzek AK, Ravi K, Muruganand A, Wadden J, Babila CM, Cantor E, Tunkle L, Wierzbicki K, Stallard S, Dickson RP, Wolfe I, Mody R, Schwartz J, Franson A, Robertson PL, Muraszko KM, Maher CO, Garton HJL, Qin T, Koschmann C. Electronic DNA Analysis of CSF Cell-free Tumor DNA to Quantify Multi-gene Molecular Response in Pediatric High-grade Glioma. Clin Cancer Res 2020;26:6266-76. [PMID: 33087334 DOI: 10.1158/1078-0432.CCR-20-2066] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 3.7] [Reference Citation Analysis]
|
| 207 |
Flageul A, Lucas P, Hirchaud E, Touzain F, Blanchard Y, Eterradossi N, Brown P, Grasland B. Viral variant visualizer (VVV): A novel bioinformatic tool for rapid and simple visualization of viral genetic diversity. Virus Res 2021;291:198201. [PMID: 33080244 DOI: 10.1016/j.virusres.2020.198201] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 208 |
Hora B, Gulzar N, Chen Y, Karagiannis K, Cai F, Su C, Smith K, Simonyan V, Shah SA, Ahmed M, Sanchez AM, Stone M, Cohen MS, Denny TN, Mazumder R, Gao F. Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing. mSphere 2020;5:e00551-20. [PMID: 33055255 DOI: 10.1128/mSphere.00551-20] [Reference Citation Analysis]
|
| 209 |
Perveen N, Muzaffar SB, Vijayan R, Al-Deeb MA. Microbial communities associated with the camel tick, Hyalomma dromedarii: 16S rRNA gene-based analysis. Sci Rep 2020;10:17035. [PMID: 33046763 DOI: 10.1038/s41598-020-74116-7] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 3.7] [Reference Citation Analysis]
|
| 210 |
Becker NS, Rollins RE, Nosenko K, Paulus A, Martin S, Krebs S, Takano A, Sato K, Kovalev SY, Kawabata H, Fingerle V, Margos G. High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis. BMC Genomics 2020;21:702. [PMID: 33032522 DOI: 10.1186/s12864-020-07054-3] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 211 |
Ruiz-Gil T, Acuña JJ, Fujiyoshi S, Tanaka D, Noda J, Maruyama F, Jorquera MA. Airborne bacterial communities of outdoor environments and their associated influencing factors. Environ Int 2020;145:106156. [PMID: 33039877 DOI: 10.1016/j.envint.2020.106156] [Cited by in Crossref: 38] [Cited by in F6Publishing: 45] [Article Influence: 12.7] [Reference Citation Analysis]
|
| 212 |
Bhuyan MSI, Pe'er I, Rahman MS. SICaRiO: short indel call filtering with boosting. Brief Bioinform 2021;22:bbaa238. [PMID: 33003198 DOI: 10.1093/bib/bbaa238] [Reference Citation Analysis]
|
| 213 |
Korhonen PK, Gasser RB, Ma G, Wang T, Stroehlein AJ, Young ND, Ang CS, Fernando DD, Lu HC, Taylor S, Reynolds SL, Mofiz E, Najaraj SH, Gowda H, Madugundu A, Renuse S, Holt D, Pandey A, Papenfuss AT, Fischer K. High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite. PLoS Negl Trop Dis 2020;14:e0008720. [PMID: 33001992 DOI: 10.1371/journal.pntd.0008720] [Cited by in Crossref: 9] [Cited by in F6Publishing: 11] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 214 |
[DOI: 10.1109/micro50266.2020.00081] [Cited by in Crossref: 15] [Cited by in F6Publishing: 16] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 215 |
Liang P, Saqib HSA, Ni X, Shen Y. Long-read sequencing and de novo genome assembly of marine medaka (Oryzias melastigma). BMC Genomics 2020;21:640. [PMID: 32938378 DOI: 10.1186/s12864-020-07042-7] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 216 |
Uelze L, Borowiak M, Bönn M, Brinks E, Deneke C, Hankeln T, Kleta S, Murr L, Stingl K, Szabo K, Tausch SH, Wöhlke A, Malorny B. German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing. Front Microbiol 2020;11:573972. [PMID: 33013811 DOI: 10.3389/fmicb.2020.573972] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 217 |
Church DL, Cerutti L, Gürtler A, Griener T, Zelazny A, Emler S. Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory. Clin Microbiol Rev 2020;33:e00053-19. [PMID: 32907806 DOI: 10.1128/CMR.00053-19] [Cited by in Crossref: 45] [Cited by in F6Publishing: 49] [Article Influence: 15.0] [Reference Citation Analysis]
|
| 218 |
Tian X, Li C, Wu Y, Ying T. Deep Mining of Human Antibody Repertoires: Concepts, Methodologies, and Applications. Small Methods 2020;4:2000451. [DOI: 10.1002/smtd.202000451] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 219 |
Beata G. The use of -omics tools for assessing biodeterioration of cultural heritage: A review. Journal of Cultural Heritage 2020;45:351-61. [DOI: 10.1016/j.culher.2020.03.006] [Cited by in Crossref: 9] [Cited by in F6Publishing: 10] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 220 |
Meggendorfer M, Walter W, Haferlach T. WGS and WTS in leukaemia: A tool for diagnostics? Best Practice & Research Clinical Haematology 2020;33:101190. [DOI: 10.1016/j.beha.2020.101190] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 221 |
Dlamini Z, Francies FZ, Hull R, Marima R. Artificial intelligence (AI) and big data in cancer and precision oncology. Comput Struct Biotechnol J 2020;18:2300-11. [PMID: 32994889 DOI: 10.1016/j.csbj.2020.08.019] [Cited by in Crossref: 51] [Cited by in F6Publishing: 57] [Article Influence: 17.0] [Reference Citation Analysis]
|
| 222 |
Zhong Y, Xu F, Wu J, Schubert J, Li MM. Application of Next Generation Sequencing in Laboratory Medicine. Ann Lab Med 2021;41:25-43. [PMID: 32829577 DOI: 10.3343/alm.2021.41.1.25] [Cited by in Crossref: 42] [Cited by in F6Publishing: 45] [Article Influence: 14.0] [Reference Citation Analysis]
|
| 223 |
Zhu H, Zhang H, Xu Y, Laššáková S, Korabečná M, Neužil P. PCR past, present and future. Biotechniques 2020;69:317-25. [PMID: 32815744 DOI: 10.2144/btn-2020-0057] [Cited by in Crossref: 61] [Cited by in F6Publishing: 67] [Article Influence: 20.3] [Reference Citation Analysis]
|
| 224 |
Francisco DMF, Marchetti L, Rodríguez-Lorenzo S, Frías-Anaya E, Figueiredo RM, Winter P, Romero IA, de Vries HE, Engelhardt B, Bruggmann R; BtRAIN Network. Advancing brain barriers RNA sequencing: guidelines from experimental design to publication. Fluids Barriers CNS 2020;17:51. [PMID: 32811511 DOI: 10.1186/s12987-020-00207-2] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 225 |
Iqbal MN, Rasheed MA, Awais M, Chammam W, Kanwal S, Khan SU, Saddick S, Tlili I. BMT: Bioinformatics mini toolbox for comprehensive DNA and protein analysis. Genomics 2020;112:4561-6. [PMID: 32791200 DOI: 10.1016/j.ygeno.2020.08.010] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 226 |
Adkar-Purushothama CR, Perreault JP. Impact of Nucleic Acid Sequencing on Viroid Biology. Int J Mol Sci 2020;21:E5532. [PMID: 32752288 DOI: 10.3390/ijms21155532] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 227 |
Cafiero C, Re A, Pisconti S, Trombetti M, Perri M, Colosimo M, D'Amato G, Gallelli L, Cannataro R, Molinario C, Fazio A, Caroleo MC, Cione E. Dysbiosis in intestinal microbiome linked to fecal blood determined by direct hybridization. 3 Biotech 2020;10:358. [PMID: 32821643 DOI: 10.1007/s13205-020-02351-w] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 228 |
Foox J, Tighe SW, Nicolet CM, Zook JM, Byrska-bishop M, Clarke WE, Khayat MM, Mahmoud M, Laaguiby PK, Herbert ZT, Warner D, Grills GS, Jen J, Levy S, Xiang J, Alonso A, Schroth GP, Sedlazeck FJ, Narzisi G, Farmerie W, Baldwin DA, Mason CE. Multi-Platform Assessment of DNA Sequencing Performance using Human and Bacterial Reference Genomes in the ABRF Next-Generation Sequencing Study.. [DOI: 10.1101/2020.07.23.218602] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 229 |
Tvedte ES, Gasser M, Sparklin BC, Michalski J, Zhao X, Bromley R, Tallon LJ, Sadzewicz L, Rasko DA, Dunning Hotopp JC. Comparison of long read sequencing technologies in resolving bacteria and fly genomes.. [DOI: 10.1101/2020.07.21.213975] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 230 |
Lightbody G, Haberland V, Browne F, Taggart L, Zheng H, Parkes E, Blayney JK. Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application. Brief Bioinform 2019;20:1795-811. [PMID: 30084865 DOI: 10.1093/bib/bby051] [Cited by in Crossref: 68] [Cited by in F6Publishing: 75] [Article Influence: 22.7] [Reference Citation Analysis]
|
| 231 |
Castaño C, Berlin A, Brandström Durling M, Ihrmark K, Lindahl BD, Stenlid J, Clemmensen KE, Olson Å. Optimized metabarcoding with Pacific biosciences enables semi-quantitative analysis of fungal communities. New Phytol 2020;228. [PMID: 32531109 DOI: 10.1111/nph.16731] [Cited by in Crossref: 33] [Cited by in F6Publishing: 34] [Article Influence: 11.0] [Reference Citation Analysis]
|
| 232 |
Fernández-rodríguez A, Casas I, Culebras E, Morilla E, Cohen MC, Alberola J. COVID-19 and post-mortem microbiological studies. Spanish Journal of Legal Medicine 2020;46:127-138. [DOI: 10.1016/j.remle.2020.05.007] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 233 |
De Vrieze J. The next frontier of the anaerobic digestion microbiome: From ecology to process control. Environmental Science and Ecotechnology 2020;3:100032. [DOI: 10.1016/j.ese.2020.100032] [Cited by in Crossref: 16] [Cited by in F6Publishing: 16] [Article Influence: 5.3] [Reference Citation Analysis]
|
| 234 |
Saliba J, Evensen NA, Meyer JA, Newman D, Nersting J, Narang S, Ma X, Schmiegelow K, Carroll WL. Feasibility of monitoring peripheral blood to detect emerging clones in children with acute lymphoblastic leukemia(†). Pediatr Blood Cancer 2020;67:e28306. [PMID: 32391957 DOI: 10.1002/pbc.28306] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 235 |
Fernández-rodríguez A, Casas I, Culebras E, Morilla E, Cohen MC, Alberola J. COVID-19 y estudios microbiológicos post mortem. Revista Española de Medicina Legal 2020;46:127-138. [DOI: 10.1016/j.reml.2020.05.007] [Cited by in Crossref: 2] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 236 |
Macchia E, Manoli K, Di Franco C, Picca RA, Österbacka R, Palazzo G, Torricelli F, Scamarcio G, Torsi L. Organic Field-Effect Transistor Platform for Label-Free, Single-Molecule Detection of Genomic Biomarkers. ACS Sens 2020;5:1822-30. [PMID: 32495625 DOI: 10.1021/acssensors.0c00694] [Cited by in Crossref: 37] [Cited by in F6Publishing: 37] [Article Influence: 12.3] [Reference Citation Analysis]
|
| 237 |
Chang JJM, Ip YCA, Bauman AG, Huang D. MinION-in-ARMS: Nanopore Sequencing to Expedite Barcoding of Specimen-Rich Macrofaunal Samples From Autonomous Reef Monitoring Structures. Front Mar Sci 2020;7:448. [DOI: 10.3389/fmars.2020.00448] [Cited by in Crossref: 22] [Cited by in F6Publishing: 24] [Article Influence: 7.3] [Reference Citation Analysis]
|
| 238 |
Ritter CD, Dunthorn M, Anslan S, de Lima VX, Tedersoo L, Nilsson RH, Antonelli A. Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. Ecol Evol 2020;10:7509-24. [PMID: 32760545 DOI: 10.1002/ece3.6477] [Cited by in Crossref: 16] [Cited by in F6Publishing: 16] [Article Influence: 5.3] [Reference Citation Analysis]
|
| 239 |
Chamberlin MD, Wells JD, Shee K, Bean JR, Marotti JD, Wells WA, Trask HW, Kolling FW, Bhatt A, Kaufman PA, Schwartz GN, Gemery JM, McNulty NJ, Tsapakos MJ, Barth RJ, Arrick BA, Gui J, Miller TW. Plasma DNA as a "liquid biopsy" incompletely complements tumor biopsy for identification of mutations in a case series of four patients with oligometastatic breast cancer. Breast Cancer Res Treat 2020;182:665-77. [PMID: 32562118 DOI: 10.1007/s10549-020-05714-2] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 240 |
Tavakoli S, Yooseph S. Learning a mixture of microbial networks using minorization-maximization. Bioinformatics 2019;35:i23-30. [PMID: 31510709 DOI: 10.1093/bioinformatics/btz370] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 3.3] [Reference Citation Analysis]
|
| 241 |
Tripathi P, Singh J, Lal JA, Tripathi V. Next-Generation Sequencing: An Emerging Tool for Drug Designing. Curr Pharm Des 2019;25:3350-7. [PMID: 31544713 DOI: 10.2174/1381612825666190911155508] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 242 |
Salmaninejad A, Motaee J, Farjami M, Alimardani M, Esmaeilie A, Pasdar A. Next-generation sequencing and its application in diagnosis of retinitis pigmentosa. Ophthalmic Genet 2019;40:393-402. [PMID: 31755340 DOI: 10.1080/13816810.2019.1675178] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 243 |
Ávila-Ríos S, Parkin N, Swanstrom R, Paredes R, Shafer R, Ji H, Kantor R. Next-Generation Sequencing for HIV Drug Resistance Testing: Laboratory, Clinical, and Implementation Considerations. Viruses 2020;12. [PMID: 32516949 DOI: 10.3390/v12060617] [Cited by in Crossref: 29] [Cited by in F6Publishing: 25] [Article Influence: 9.7] [Reference Citation Analysis]
|
| 244 |
Singh RR. Next-Generation Sequencing in High-Sensitive Detection of Mutations in Tumors: Challenges, Advances, and Applications. J Mol Diagn 2020;22:994-1007. [PMID: 32480002 DOI: 10.1016/j.jmoldx.2020.04.213] [Cited by in Crossref: 25] [Cited by in F6Publishing: 28] [Article Influence: 8.3] [Reference Citation Analysis]
|
| 245 |
Feng S, Zheng K, Jiao K, Cai Y, Chen C, Mao Y, Wang L, Zhan X, Ying Q, Wang H. Complete chloroplast genomes of four Physalis species (Solanaceae): lights into genome structure, comparative analysis, and phylogenetic relationships. BMC Plant Biol 2020;20:242. [PMID: 32466748 DOI: 10.1186/s12870-020-02429-w] [Cited by in Crossref: 12] [Cited by in F6Publishing: 15] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 246 |
Ballard D, Winkler-Galicki J, Wesoły J. Massive parallel sequencing in forensics: advantages, issues, technicalities, and prospects. Int J Legal Med 2020;134:1291-303. [PMID: 32451905 DOI: 10.1007/s00414-020-02294-0] [Cited by in Crossref: 26] [Cited by in F6Publishing: 30] [Article Influence: 8.7] [Reference Citation Analysis]
|
| 247 |
Chen L, Wang J, Tan L, Lu C, Fu G, Fu L, Zhang X, Wang Q, Ma C, Cong B, Li S. Highly accurate mtGenome haplotypes from long-read SMRT sequencing can distinguish between monozygotic twins. Forensic Sci Int Genet 2020;47:102306. [PMID: 32438082 DOI: 10.1016/j.fsigen.2020.102306] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 248 |
Taylor WS, Pearson J, Miller A, Schmeier S, Frizelle FA, Purcell RV. MinION Sequencing of colorectal cancer tumour microbiomes-A comparison with amplicon-based and RNA-Sequencing. PLoS One 2020;15:e0233170. [PMID: 32433701 DOI: 10.1371/journal.pone.0233170] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 249 |
Yang Y, Wu LN, Chen JF, Wu X, Xia JH, Meng ZN, Liu XC, Lin HR. Whole-genome sequencing of leopard coral grouper ( Plectropomus leopardus) and exploration of regulation mechanism of skin color and adaptive evolution. Zool Res 2020;41:328-40. [PMID: 32212431 DOI: 10.24272/j.issn.2095-8137.2020.038] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 3.7] [Reference Citation Analysis]
|
| 250 |
Sutton JM, Millwood JD, Mccormack AC, Fierst JL. Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies.. [DOI: 10.1101/2020.05.05.079327] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 251 |
Ambrosino L, Colantuono C, Diretto G, Fiore A, Chiusano ML. Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. Plants (Basel) 2020;9:E591. [PMID: 32384671 DOI: 10.3390/plants9050591] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 4.7] [Reference Citation Analysis]
|
| 252 |
Branco GP, Valieris R, Povoa LV, Araújo LF, Fernandes GR, Souza JES, Amorim MG, Ferreira ENE, Silva ITD, Nunes DN, Dias-Neto E. A comparison between SOLiD 5500XLand Ion Torrent PGM-derived miRNA expression profiles in two breast cell lines. Genet Mol Biol 2020;43:e20180351. [PMID: 32352476 DOI: 10.1590/1678-4685-GMB-2018-0351] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 253 |
Ahmed W. RNA-seq resolving host-pathogen interactions: Advances and applications. Ecological Genetics and Genomics 2020;15:100057. [DOI: 10.1016/j.egg.2020.100057] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 254 |
Uelze L, Borowiak M, Brinks E, Deneke C, Stingl K, Kleta S, Tausch SH, Szabo K, Wöhlke A, Malorny B. German-wide interlaboratory study compares consistency, accuracy and reproducibility of whole-genome short read sequencing.. [DOI: 10.1101/2020.04.22.054759] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 255 |
Marine RL, Magaña LC, Castro CJ, Zhao K, Montmayeur AM, Schmidt A, Diez-Valcarce M, Ng TFF, Vinjé J, Burns CC, Nix WA, Rota PA, Oberste MS. Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses. J Virol Methods 2020;280:113865. [PMID: 32302601 DOI: 10.1016/j.jviromet.2020.113865] [Cited by in Crossref: 10] [Cited by in F6Publishing: 12] [Article Influence: 3.3] [Reference Citation Analysis]
|
| 256 |
Bronner IF, Quail MA. Best Practices for Illumina Library Preparation. Curr Protoc Hum Genet 2019;102:e86. [PMID: 31216112 DOI: 10.1002/cphg.86] [Cited by in Crossref: 8] [Cited by in F6Publishing: 10] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 257 |
Pan Y, Qiu D, Chen J, Yue Q. Combining a COI Mini-Barcode with Next-Generation Sequencing for Animal Origin Ingredients Identification in Processed Meat Product. Journal of Food Quality 2020;2020:1-9. [DOI: 10.1155/2020/2907670] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 258 |
Fuentes SM, Bae EH, Nandakumar S, Williams DK, Khan AS. Genome Analysis and Replication Studies of the African Green Monkey Simian Foamy Virus Serotype 3 Strain FV2014. Viruses 2020;12:E403. [PMID: 32268512 DOI: 10.3390/v12040403] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 259 |
Chan AW, Pan Y, Tong JH, Lung RW, Kwan JS, Chow C, Tin EK, Chung LY, Li H, Wong SS, Chau SL, Chan YY, Mak TW, Ng SS, To KF. Receptor tyrosine kinase fusions act as a significant alternative driver of the serrated pathway in colorectal cancer development. J Pathol 2020;251:74-86. [PMID: 32162306 DOI: 10.1002/path.5418] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 260 |
Disratthakit A, Toyo-oka L, Thawong P, Paiboonsiri P, Wichukjinda N, Ajawatanawong P, Thipkrua N, Suthum K, Palittapongarnpim P, Tokunaga K, Mahasirimongkol S. An optimized genomic VCF workflow for precise identification of Mycobacterium tuberculosis cluster from cross-platform whole genome sequencing data. Infection, Genetics and Evolution 2020;79:104152. [DOI: 10.1016/j.meegid.2019.104152] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 261 |
Chang JJM, Ip YCA, Bauman AG, Huang D. MinION-in-ARMS: Nanopore Sequencing To Expedite Barcoding Of Specimen-Rich Macrofaunal Samples From Autonomous Reef Monitoring Structures.. [DOI: 10.1101/2020.03.30.009654] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 262 |
Xu Z, Green B, Benoit N, Schatz M, Wheelan S, Cormack B. De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays. Mol Microbiol 2020;113:1209-24. [DOI: 10.1111/mmi.14488] [Cited by in Crossref: 13] [Cited by in F6Publishing: 15] [Article Influence: 4.3] [Reference Citation Analysis]
|
| 263 |
Garzón-orduña IJ, Geib SM, Ledezma L, Bremer FT, Barr NB, Gaddis K. Implementing Low-Cost, High Accuracy DNA Barcoding From Single Molecule Sequencing to Screen Larval Tephritid Fruit Flies Intercepted at Ports of Entry. Annals of the Entomological Society of America 2020;113:288-97. [DOI: 10.1093/aesa/saz071] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 264 |
Irshad A, Guo H, Zhang S, Liu L. TILLING in Cereal Crops for Allele Expansion and Mutation Detection by Using Modern Sequencing Technologies. Agronomy 2020;10:405. [DOI: 10.3390/agronomy10030405] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 265 |
Laissue P, Vaiman D. Exploring the Molecular Aetiology of Preeclampsia by Massive Parallel Sequencing of DNA. Curr Hypertens Rep 2020;22:31. [PMID: 32172383 DOI: 10.1007/s11906-020-01039-z] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 266 |
Modlin SJ, Robinhold C, Morrissey C, Mitchell SN, Ramirez-busby SM, Shmaya T, Valafar F. Exact mapping of Illumina blind spots in the Mycobacterium tuberculosis genome reveals platform-wide and workflow-specific biases.. [DOI: 10.1101/2020.03.11.987933] [Reference Citation Analysis]
|
| 267 |
Grazina L, Amaral JS, Mafra I. Botanical origin authentication of dietary supplements by DNA‐based approaches. Comprehensive Reviews in Food Science and Food Safety 2020;19:1080-109. [DOI: 10.1111/1541-4337.12551] [Cited by in Crossref: 36] [Cited by in F6Publishing: 36] [Article Influence: 12.0] [Reference Citation Analysis]
|
| 268 |
Onywera H, Meiring TL. Comparative analyses of Ion Torrent V4 and Illumina V3-V4 16S rRNA gene metabarcoding methods for characterization of cervical microbiota: taxonomic and functional profiling. Scientific African 2020;7:e00278. [DOI: 10.1016/j.sciaf.2020.e00278] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 269 |
Yang R, Zhang B, Wang J, Tai X, Sun H, Zhang G, Zhang W, Chen T, Liu G. Planococcus lenghuensis sp. nov., an oil-degrading bacterium isolated from petroleum-contaminated soil. Antonie Van Leeuwenhoek 2020;113:839-50. [PMID: 32114684 DOI: 10.1007/s10482-020-01394-6] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 270 |
Ge S, Ma J, Liu L, Yuan Z. The Impact of Exogenous Aerobic Bacteria on Sustainable Methane Production Associated with Municipal Solid Waste Biodegradation: Revealed by High-Throughput Sequencing. Sustainability 2020;12:1815. [DOI: 10.3390/su12051815] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 271 |
González-castillo A, Enciso-ibarra J, Gomez-gil B. Genomic taxonomy of the Mediterranei clade of the genus Vibrio (Gammaproteobacteria). Antonie van Leeuwenhoek 2020;113:851-9. [DOI: 10.1007/s10482-020-01396-4] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 272 |
Chen Z, Yuan Y, Chen X, Chen J, Lin S, Li X, Du H. Systematic comparison of somatic variant calling performance among different sequencing depth and mutation frequency. Sci Rep 2020;10:3501. [PMID: 32103116 DOI: 10.1038/s41598-020-60559-5] [Cited by in Crossref: 18] [Cited by in F6Publishing: 20] [Article Influence: 6.0] [Reference Citation Analysis]
|
| 273 |
Bolli N, Genuardi E, Ziccheddu B, Martello M, Oliva S, Terragna C. Next-Generation Sequencing for Clinical Management of Multiple Myeloma: Ready for Prime Time? Front Oncol 2020;10:189. [PMID: 32181154 DOI: 10.3389/fonc.2020.00189] [Cited by in Crossref: 18] [Cited by in F6Publishing: 19] [Article Influence: 6.0] [Reference Citation Analysis]
|
| 274 |
Poen MJ, Pohlmann A, Amid C, Bestebroer TM, Brookes SM, Brown IH, Everett H, Schapendonk CME, Scheuer RD, Smits SL, Beer M, Fouchier RAM, Ellis RJ. Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak. PLoS One 2020;15:e0229326. [PMID: 32078666 DOI: 10.1371/journal.pone.0229326] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 275 |
McElhoe JA, Holland MM. Characterization of background noise in MiSeq MPS data when sequencing human mitochondrial DNA from various sample sources and library preparation methods. Mitochondrion 2020;52:40-55. [PMID: 32068127 DOI: 10.1016/j.mito.2020.02.005] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 276 |
Xu J, Chen M, Liu QY, Hu SQ, Li LR, Li J, Ma RM. Detecting trisomy in products of conception from first-trimester spontaneous miscarriages by next-generation sequencing (NGS). Medicine (Baltimore) 2020;99:e18731. [PMID: 32000376 DOI: 10.1097/MD.0000000000018731] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 277 |
Amarasinghe SL, Su S, Dong X, Zappia L, Ritchie ME, Gouil Q. Opportunities and challenges in long-read sequencing data analysis. Genome Biol 2020;21:30. [PMID: 32033565 DOI: 10.1186/s13059-020-1935-5] [Cited by in Crossref: 798] [Cited by in F6Publishing: 833] [Article Influence: 266.0] [Reference Citation Analysis]
|
| 278 |
Luo Y, Liao X, Wu F, Wang J. Computational Approaches for Transcriptome Assembly Based on Sequencing Technologies. CBIO 2020;15:2-16. [DOI: 10.2174/1574893614666190410155603] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 279 |
Sciuto EL, Petralia S, Calabrese G, Conoci S. An integrated biosensor platform for extraction and detection of nucleic acids. Biotechnol Bioeng 2020;117:1554-61. [PMID: 31997343 DOI: 10.1002/bit.27290] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 4.3] [Reference Citation Analysis]
|
| 280 |
Santos A, van Aerle R, Barrientos L, Martinez-Urtaza J. Computational methods for 16S metabarcoding studies using Nanopore sequencing data. Comput Struct Biotechnol J 2020;18:296-305. [PMID: 32071706 DOI: 10.1016/j.csbj.2020.01.005] [Cited by in Crossref: 50] [Cited by in F6Publishing: 51] [Article Influence: 16.7] [Reference Citation Analysis]
|
| 281 |
Chiniquy J, Garber ME, Mukhopadhyay A, Hillson NJ. Fluorescent amplification for next generation sequencing (FA-NGS) library preparation. BMC Genomics 2020;21:85. [PMID: 31992180 DOI: 10.1186/s12864-020-6481-8] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 282 |
Zhang HL, Ntambo MS, Rott PC, Chen G, Chen LL, Huang MT, Gao SJ. Complete Genome Sequence Reveals Evolutionary and Comparative Genomic Features of Xanthomonas albilineans Causing Sugarcane Leaf Scald. Microorganisms 2020;8:E182. [PMID: 32012870 DOI: 10.3390/microorganisms8020182] [Cited by in Crossref: 8] [Cited by in F6Publishing: 10] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 283 |
Dong Y, Sun F, Ping Z, Ouyang Q, Qian L. DNA storage: research landscape and future prospects. National Science Review 2020;7:1092-107. [DOI: 10.1093/nsr/nwaa007] [Cited by in Crossref: 48] [Cited by in F6Publishing: 50] [Article Influence: 16.0] [Reference Citation Analysis]
|
| 284 |
Zhou X, Khare T, Kumar V. Recent trends and advances in identification and functional characterization of plant miRNAs. Acta Physiol Plant 2020;42. [DOI: 10.1007/s11738-020-3013-8] [Cited by in Crossref: 15] [Cited by in F6Publishing: 8] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 285 |
Lewis E, Hudson JA, Cook N, Barnes JD, Haynes E. Next-generation sequencing as a screening tool for foodborne pathogens in fresh produce. J Microbiol Methods 2020;171:105840. [PMID: 31945388 DOI: 10.1016/j.mimet.2020.105840] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 286 |
Wang LY, Cui JJ, Guo CX, Yin JY. A New Way to Discover IRESs in Pathology or Stress Conditions? Harnessing Latest High-Throughput Technologies. Bioessays 2020;42:e1900180. [PMID: 31909834 DOI: 10.1002/bies.201900180] [Reference Citation Analysis]
|
| 287 |
Pereira R, Oliveira J, Sousa M. Bioinformatics and Computational Tools for Next-Generation Sequencing Analysis in Clinical Genetics. J Clin Med 2020;9:E132. [PMID: 31947757 DOI: 10.3390/jcm9010132] [Cited by in Crossref: 68] [Cited by in F6Publishing: 72] [Article Influence: 22.7] [Reference Citation Analysis]
|
| 288 |
Abdullah T, Ahmet A. Extracting Insights: A Data Centre Architecture Approach in Million Genome Era. Lecture Notes in Computer Science 2020. [DOI: 10.1007/978-3-662-62386-2_1] [Reference Citation Analysis]
|
| 289 |
Willsey AJ, Morris MT. Next-Generation Sequencing. Encyclopedia of Autism Spectrum Disorders 2020. [DOI: 10.1007/978-1-4614-6435-8_1986-3] [Reference Citation Analysis]
|
| 290 |
Contreras AL, Andal JJL, Lo RM, Ang DC. Pre-analytics, Current Testing Technologies, and Limitations of Testing. Genomic Medicine 2020. [DOI: 10.1007/978-3-030-22922-1_1] [Reference Citation Analysis]
|
| 291 |
Slezak T, Allen J, Jaing C. Genomics. Microbial Forensics 2020. [DOI: 10.1016/b978-0-12-815379-6.00019-2] [Reference Citation Analysis]
|
| 292 |
Velegraki A. Panmicrobial Microarrays. Microbiomics 2020. [DOI: 10.1016/b978-0-12-816664-2.00006-2] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 293 |
Schmedes SE, Woerner A, Budowle B. Forensic human identification using skin microbiome genetic signatures. Microbial Forensics 2020. [DOI: 10.1016/b978-0-12-815379-6.00011-8] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 294 |
Kieser RE, Budowle B. Select methods for microbial forensic nucleic acid analysis of trace and uncultivable specimens. Microbial Forensics 2020. [DOI: 10.1016/b978-0-12-815379-6.00013-1] [Cited by in Crossref: 2] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 295 |
Sturk-andreaggi K, Parson W, Allen M, Marshall C. Impact of the sequencing method on the detection and interpretation of mitochondrial DNA length heteroplasmy. Forensic Science International: Genetics 2020;44:102205. [DOI: 10.1016/j.fsigen.2019.102205] [Cited by in Crossref: 17] [Cited by in F6Publishing: 10] [Article Influence: 5.7] [Reference Citation Analysis]
|
| 296 |
Bani Baker Q, Hammad M, Al-rashdan W, Jararweh Y, Al-smadi M, Al-zinati M. Comprehensive comparison of cloud-based NGS data analysis and alignment tools. Informatics in Medicine Unlocked 2020;18:100296. [DOI: 10.1016/j.imu.2020.100296] [Cited by in Crossref: 5] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 297 |
Kambouris ME, Manoussopoulos Y, Patrinos GP, Velegraki A. Microbial Genomics in Public Health: A Translational Risk-Response Aspect. Applied Genomics and Public Health 2020. [DOI: 10.1016/b978-0-12-813695-9.00007-8] [Reference Citation Analysis]
|
| 298 |
Agudelo-valencia D, Uribe-echeverry PT, Betancur-pérez JF. De novo assembly and annotation of the Ganoderma australe genome. Genomics 2020;112:930-3. [DOI: 10.1016/j.ygeno.2019.06.008] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 299 |
Barba E, Tsermpini E, Patrinos GP, Koromina M. Genome Informatics Pipelines and Genome Browsers. Applied Genomics and Public Health 2020. [DOI: 10.1016/b978-0-12-813695-9.00008-x] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 300 |
Lindblad KA, Pathmanathan JS, Moreira S, Bracht JR, Sebra RP, Hutton ER, Landweber LF. Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms. BMC Genomics 2019;20:1037. [PMID: 31888453 DOI: 10.1186/s12864-019-6189-9] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 301 |
Wang Q, Kotoula V, Hsu PC, Papadopoulou K, Ho JWK, Fountzilas G, Giannoulatou E. Comparison of somatic variant detection algorithms using Ion Torrent targeted deep sequencing data. BMC Med Genomics 2019;12:181. [PMID: 31874647 DOI: 10.1186/s12920-019-0636-y] [Cited by in Crossref: 1] [Cited by in F6Publishing: 3] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 302 |
Dhorne-pollet S, Barrey E, Pollet N. A new method for long-read sequencing of animal mitochondrial genomes: application to the identification of equine mitochondrial DNA variants.. [DOI: 10.1101/2019.12.20.884486] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 303 |
Salem SE, Maddox TW, Antczak P, Ketley JM, Williams NJ, Archer DC. Acute changes in the colonic microbiota are associated with large intestinal forms of surgical colic. BMC Vet Res 2019;15:468. [PMID: 31864369 DOI: 10.1186/s12917-019-2205-1] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 304 |
Bailén M, Bressa C, Larrosa M, González-Soltero R. Bioinformatic strategies to address limitations of 16rRNA short-read amplicons from different sequencing platforms. J Microbiol Methods 2020;169:105811. [PMID: 31857143 DOI: 10.1016/j.mimet.2019.105811] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 305 |
Calarco L, Barratt J, Ellis J. Detecting sequence variants in clinically important protozoan parasites. Int J Parasitol 2020;50:1-18. [PMID: 31857072 DOI: 10.1016/j.ijpara.2019.10.004] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 306 |
Chen W, Shakir S, Bigham M, Richter A, Fei Z, Jander G. Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch). Gigascience 2019;8:giz033. [PMID: 30953568 DOI: 10.1093/gigascience/giz033] [Cited by in Crossref: 38] [Cited by in F6Publishing: 40] [Article Influence: 9.5] [Reference Citation Analysis]
|
| 307 |
Otto TD, Assefa SA, Böhme U, Sanders MJ, Kwiatkowski D, Berriman M, Newbold C; Pf3k consortium. Evolutionary analysis of the most polymorphic gene family in falciparum malaria. Wellcome Open Res 2019;4:193. [PMID: 32055709 DOI: 10.12688/wellcomeopenres.15590.1] [Cited by in Crossref: 35] [Cited by in F6Publishing: 39] [Article Influence: 8.8] [Reference Citation Analysis]
|
| 308 |
Redin D, Frick T, Aghelpasand H, Käller M, Borgström E, Olsen RA, Ahmadian A. High throughput barcoding method for genome-scale phasing. Sci Rep 2019;9:18116. [PMID: 31792271 DOI: 10.1038/s41598-019-54446-x] [Cited by in Crossref: 5] [Cited by in F6Publishing: 9] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 309 |
Shen AJJ, King J, Scott H, Colman P, Yates CJ. Insights into pituitary tumorigenesis: from Sanger sequencing to next-generation sequencing and beyond. Expert Review of Endocrinology & Metabolism 2019;14:399-418. [DOI: 10.1080/17446651.2019.1689120] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 310 |
Zheng Y, Gong X. Niche differentiation rather than biogeography shapes the diversity and composition of microbiome of Cycas panzhihuaensis. Microbiome 2019;7:152. [PMID: 31791400 DOI: 10.1186/s40168-019-0770-y] [Cited by in Crossref: 44] [Cited by in F6Publishing: 47] [Article Influence: 11.0] [Reference Citation Analysis]
|
| 311 |
Tan C, Liu H, Ren J, Ye X, Feng H, Liu Z. Single-molecule real-time sequencing facilitates the analysis of transcripts and splice isoforms of anthers in Chinese cabbage (Brassica rapa L. ssp. pekinensis). BMC Plant Biol 2019;19:517. [PMID: 31771515 DOI: 10.1186/s12870-019-2133-z] [Cited by in Crossref: 12] [Cited by in F6Publishing: 13] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 312 |
Yao Y, Nishimura M, Murayama K, Kuranobu N, Tojo S, Beppu M, Ishige T, Itoga S, Tsuchida S, Mori M, Takayanagi M, Yokoyama M, Yamagata K, Kishita Y, Okazaki Y, Nomura F, Matsushita K, Tanaka T. A simple method for sequencing the whole human mitochondrial genome directly from samples and its application to genetic testing. Sci Rep 2019;9:17411. [PMID: 31757988 DOI: 10.1038/s41598-019-53449-y] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 313 |
Zamperin G, Lucas P, Cano I, Ryder D, Abbadi M, Stone D, Cuenca A, Vigouroux E, Blanchard Y, Panzarin V. Sequencing of animal viruses: quality data assurance for NGS bioinformatics. Virol J 2019;16:140. [PMID: 31752912 DOI: 10.1186/s12985-019-1223-8] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 314 |
Quijada NM, Hernández M, Rodríguez-Lázaro D. High-throughput sequencing and food microbiology. Adv Food Nutr Res 2020;91:275-300. [PMID: 32035598 DOI: 10.1016/bs.afnr.2019.10.003] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 315 |
Harvey NR, Albury CL, Stuart S, Benton MC, Eccles DA, Connell JR, Sutherland HG, Allcock RJN, Lea RA, Haupt LM, Griffiths LR. Ion torrent high throughput mitochondrial genome sequencing (HTMGS). PLoS One 2019;14:e0224847. [PMID: 31730669 DOI: 10.1371/journal.pone.0224847] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 316 |
Salk JJ, Kennedy SR. Next-Generation Genotoxicology: Using Modern Sequencing Technologies to Assess Somatic Mutagenesis and Cancer Risk. Environ Mol Mutagen 2020;61:135-51. [PMID: 31595553 DOI: 10.1002/em.22342] [Cited by in Crossref: 27] [Cited by in F6Publishing: 28] [Article Influence: 6.8] [Reference Citation Analysis]
|
| 317 |
Pasquali F, Do Valle I, Palma F, Remondini D, Manfreda G, Castellani G, Hendriksen RS, De Cesare A. Application of different DNA extraction procedures, library preparation protocols and sequencing platforms: impact on sequencing results. Heliyon 2019;5:e02745. [PMID: 31720479 DOI: 10.1016/j.heliyon.2019.e02745] [Cited by in Crossref: 8] [Cited by in F6Publishing: 9] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 318 |
Smith-Aguasca R, Gupta H, Uberegui E, Maquina M, Saute F, Paaijmans KP, Mayor A, Huijben S. Mosquitoes as a feasible sentinel group for anti-malarial resistance surveillance by Next Generation Sequencing of Plasmodium falciparum. Malar J 2019;18:351. [PMID: 31623623 DOI: 10.1186/s12936-019-2946-0] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 319 |
Dougherty L, Singh R, Brown S, Dardick C, Xu K. Exploring DNA variant segregation types in pooled genome sequencing enables effective mapping of weeping trait in Malus. J Exp Bot 2018;69:1499-516. [PMID: 29361034 DOI: 10.1093/jxb/erx490] [Cited by in Crossref: 25] [Cited by in F6Publishing: 25] [Article Influence: 6.3] [Reference Citation Analysis]
|
| 320 |
Glenn TC, Pierson TW, Bayona-Vásquez NJ, Kieran TJ, Hoffberg SL, Thomas Iv JC, Lefever DE, Finger JW, Gao B, Bian X, Louha S, Kolli RT, Bentley KE, Rushmore J, Wong K, Shaw TI, Rothrock MJ Jr, McKee AM, Guo TL, Mauricio R, Molina M, Cummings BS, Lash LH, Lu K, Gilbert GS, Hubbell SP, Faircloth BC. Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix). PeerJ 2019;7:e7786. [PMID: 31616589 DOI: 10.7717/peerj.7786] [Cited by in Crossref: 24] [Cited by in F6Publishing: 25] [Article Influence: 6.0] [Reference Citation Analysis]
|
| 321 |
Pompili V, Dalla Costa L, Piazza S, Pindo M, Malnoy M. Reduced fire blight susceptibility in apple cultivars using a high-efficiency CRISPR/Cas9-FLP/FRT-based gene editing system. Plant Biotechnol J 2020;18:845-58. [PMID: 31495052 DOI: 10.1111/pbi.13253] [Cited by in Crossref: 56] [Cited by in F6Publishing: 58] [Article Influence: 14.0] [Reference Citation Analysis]
|
| 322 |
Nguyen TK, Lim J. Tools for Chrysanthemum genetic research and breeding: Is genotyping-by-sequencing (GBS) the best approach? Hortic Environ Biotechnol 2019;60:625-35. [DOI: 10.1007/s13580-019-00160-6] [Cited by in Crossref: 11] [Cited by in F6Publishing: 4] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 323 |
Kunimasa K, Kato K, Imamura F, Kukita Y. Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment. PLoS One 2019;14:e0222233. [PMID: 31513617 DOI: 10.1371/journal.pone.0222233] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 324 |
Kim YH, Song Y, Kim JK, Kim TM, Sim HW, Kim HL, Jang H, Kim YW, Hong KM. False-negative errors in next-generation sequencing contribute substantially to inconsistency of mutation databases. PLoS One 2019;14:e0222535. [PMID: 31513681 DOI: 10.1371/journal.pone.0222535] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 325 |
Franz A, Rabien A, Stephan C, Ralla B, Fuchs S, Jung K, Fendler A. Circular RNAs: a new class of biomarkers as a rising interest in laboratory medicine. Clin Chem Lab Med 2018;56:1992-2003. [PMID: 29804099 DOI: 10.1515/cclm-2018-0231] [Cited by in Crossref: 14] [Cited by in F6Publishing: 17] [Article Influence: 3.5] [Reference Citation Analysis]
|
| 326 |
Mcgee KM, Robinson CV, Hajibabaei M. Gaps in DNA-Based Biomonitoring Across the Globe. Front Ecol Evol 2019;7:337. [DOI: 10.3389/fevo.2019.00337] [Cited by in Crossref: 45] [Cited by in F6Publishing: 45] [Article Influence: 11.3] [Reference Citation Analysis]
|
| 327 |
Petrackova A, Vasinek M, Sedlarikova L, Dyskova T, Schneiderova P, Novosad T, Papajik T, Kriegova E. Standardization of Sequencing Coverage Depth in NGS: Recommendation for Detection of Clonal and Subclonal Mutations in Cancer Diagnostics. Front Oncol 2019;9:851. [PMID: 31552176 DOI: 10.3389/fonc.2019.00851] [Cited by in Crossref: 46] [Cited by in F6Publishing: 49] [Article Influence: 11.5] [Reference Citation Analysis]
|
| 328 |
Sun L, Pfeifer JD. Pitfalls in molecular diagnostics. Seminars in Diagnostic Pathology 2019;36:342-54. [DOI: 10.1053/j.semdp.2019.06.002] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 329 |
[DOI: 10.1109/pact.2019.00030] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 330 |
Thorell K, Meier-Kolthoff JP, Sjöling Å, Martín-Rodríguez AJ. Whole-Genome Sequencing Redefines Shewanella Taxonomy. Front Microbiol 2019;10:1861. [PMID: 31555221 DOI: 10.3389/fmicb.2019.01861] [Cited by in Crossref: 30] [Cited by in F6Publishing: 31] [Article Influence: 7.5] [Reference Citation Analysis]
|
| 331 |
Seth-Smith HMB, Bonfiglio F, Cuénod A, Reist J, Egli A, Wüthrich D. Evaluation of Rapid Library Preparation Protocols for Whole Genome Sequencing Based Outbreak Investigation. Front Public Health 2019;7:241. [PMID: 31508405 DOI: 10.3389/fpubh.2019.00241] [Cited by in Crossref: 24] [Cited by in F6Publishing: 23] [Article Influence: 6.0] [Reference Citation Analysis]
|
| 332 |
Ji H, Enns E, Brumme CJ, Parkin N, Howison M, Lee ER, Capina R, Marinier E, Avila-Rios S, Sandstrom P, Van Domselaar G, Harrigan R, Paredes R, Kantor R, Noguera-Julian M. Bioinformatic data processing pipelines in support of next-generation sequencing-based HIV drug resistance testing: the Winnipeg Consensus. J Int AIDS Soc 2018;21:e25193. [PMID: 30350345 DOI: 10.1002/jia2.25193] [Cited by in Crossref: 27] [Cited by in F6Publishing: 27] [Article Influence: 6.8] [Reference Citation Analysis]
|
| 333 |
Cho Y, Lee S, Hong JH, Kim BJ, Hong WY, Jung J, Lee HB, Sung J, Kim HN, Kim HL, Jung J. Development of the variant calling algorithm, ADIScan, and its use to estimate discordant sequences between monozygotic twins. Nucleic Acids Res 2018;46:e92. [PMID: 29873758 DOI: 10.1093/nar/gky445] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 334 |
Ibrahim O, Sutherland HG, Haupt LM, Griffiths LR. Saliva as a comparable-quality source of DNA for Whole Exome Sequencing on Ion platforms. Genomics 2020;112:1437-43. [PMID: 31445087 DOI: 10.1016/j.ygeno.2019.08.014] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 335 |
Solís M, Salas A, Lagos C, Valenzuela S, Emhart V, Férnandez M. De Novo Transcriptome Assembly of Eucalyptus nitens and the Expression of R2R3-MYB Genes in Response to Cold Acclimation in Eucalyptus Spp. Plant Mol Biol Rep 2019;37:376-88. [DOI: 10.1007/s11105-019-01160-7] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 336 |
Smits THM. The importance of genome sequence quality to microbial comparative genomics. BMC Genomics 2019;20:662. [PMID: 31429698 DOI: 10.1186/s12864-019-6014-5] [Cited by in Crossref: 22] [Cited by in F6Publishing: 24] [Article Influence: 5.5] [Reference Citation Analysis]
|
| 337 |
Le Cam B, Sargent D, Gouzy J, Amselem J, Bellanger MN, Bouchez O, Brown S, Caffier V, De Gracia M, Debuchy R, Duvaux L, Payen T, Sannier M, Shiller J, Collemare J, Lemaire C. Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata. G3 (Bethesda) 2019;9:2405-14. [PMID: 31253647 DOI: 10.1534/g3.119.400047] [Cited by in Crossref: 21] [Cited by in F6Publishing: 22] [Article Influence: 5.3] [Reference Citation Analysis]
|
| 338 |
Kleftogiannis D, Punta M, Jayaram A, Sandhu S, Wong SQ, Gasi Tandefelt D, Conteduca V, Wetterskog D, Attard G, Lise S. Identification of single nucleotide variants using position-specific error estimation in deep sequencing data. BMC Med Genomics 2019;12:115. [PMID: 31375105 DOI: 10.1186/s12920-019-0557-9] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 339 |
Ishige T, Itoga S, Kawasaki K, Utsuno E, Beppu M, Sawai S, Nishimura M, Ichikawa T, Nomura F, Matsushita K. Evaluation of analytical factors associated with targeted MEFV gene sequencing using long-range PCR/massively parallel sequencing of whole blood DNA for molecular diagnosis of Familial Mediterranean fever. Clinica Chimica Acta 2019;495:562-569. [DOI: 10.1016/j.cca.2019.06.001] [Reference Citation Analysis]
|
| 340 |
Sabara PH, Jakhesara SJ, Panchal KJ, Joshi CG, Koringa PG. Transcriptomic analysis to affirm the regulatory role of long non-coding RNA in horn cancer of Indian zebu cattle breed Kankrej (Bos indicus). Funct Integr Genomics 2020;20:75-87. [PMID: 31368028 DOI: 10.1007/s10142-019-00700-4] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 341 |
Andrews TS, Yu. Kiselev V, Hemberg M. Statistical Methods for Single‐Cell RNA‐Sequencing. Handbook of Statistical Genomics 2019. [DOI: 10.1002/9781119487845.ch26] [Reference Citation Analysis]
|
| 342 |
Stark R, Grzelak M, Hadfield J. RNA sequencing: the teenage years. Nat Rev Genet 2019;20:631-56. [DOI: 10.1038/s41576-019-0150-2] [Cited by in Crossref: 659] [Cited by in F6Publishing: 679] [Article Influence: 164.8] [Reference Citation Analysis]
|
| 343 |
Dunham-cheatham SM, You Y. General Geochemistry and Microbiology Techniques. Analytical Geomicrobiology 2019. [DOI: 10.1017/9781107707399.001] [Reference Citation Analysis]
|
| 344 |
Cuypers L, Thijssen M, Shakibzadeh A, Sabahi F, Ravanshad M, Pourkarim MR. Next-generation sequencing for the clinical management of hepatitis C virus infections: does one test fits all purposes? Crit Rev Clin Lab Sci 2019;56:420-34. [PMID: 31317801 DOI: 10.1080/10408363.2019.1637394] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 345 |
Akob DM, Mumford AC, Dunlap DS, Poret-peterson AT. Phylogenetic Techniques in Geomicrobiology. Analytical Geomicrobiology 2019. [DOI: 10.1017/9781107707399.015] [Reference Citation Analysis]
|
| 346 |
Marine RL, Magaña LC, Castro CJ, Zhao K, Montmayeur AM, Schmidt A, Diez-valcarce M, Ng TFF, Vinjé J, Burns CC, Nix WA, Rota PA, Oberste MS. Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses.. [DOI: 10.1101/705632] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 347 |
García-López R, Pérez-Brocal V, Moya A. Beyond cells - The virome in the human holobiont. Microb Cell 2019;6:373-96. [PMID: 31528630 DOI: 10.15698/mic2019.09.689] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 348 |
Sahu S, Zwolak M. Colloquium: Ionic phenomena in nanoscale pores through 2D materials. Rev Mod Phys 2019;91. [PMID: 31579274 DOI: 10.1103/RevModPhys.91.021004] [Cited by in Crossref: 37] [Cited by in F6Publishing: 37] [Article Influence: 9.3] [Reference Citation Analysis]
|
| 349 |
Lin J, Meng Y, Shi Y, Lin X. Complete Genome Sequences of Colwellia sp. Arc7-635, a Denitrifying Bacterium Isolated from Arctic Seawater. Curr Microbiol 2019;76:1061-5. [PMID: 31240393 DOI: 10.1007/s00284-019-01714-8] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 350 |
Chen H, Lin L, Xie M, Zhong Y, Zhang G, Su W. Survey of the Bradysia odoriphaga Transcriptome Using PacBio Single-Molecule Long-Read Sequencing. Genes (Basel) 2019;10:E481. [PMID: 31242713 DOI: 10.3390/genes10060481] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 351 |
Taylor T, Lee ER, Nykoluk M, Enns E, Liang B, Capina R, Gauthier MK, Domselaar GV, Sandstrom P, Brooks J, Ji H. A MiSeq-HyDRA platform for enhanced HIV drug resistance genotyping and surveillance. Sci Rep 2019;9:8970. [PMID: 31222149 DOI: 10.1038/s41598-019-45328-3] [Cited by in Crossref: 27] [Cited by in F6Publishing: 27] [Article Influence: 6.8] [Reference Citation Analysis]
|
| 352 |
Bérubé JA, Gagné PN, Ponchart JP, Phelan J, Varga A, James D. Heterobasidion species detected using High Throughput Sequencing (HTS) methods on British Columbia nursery plants. Canadian Journal of Plant Pathology 2019;41:560-5. [DOI: 10.1080/07060661.2019.1611665] [Reference Citation Analysis]
|
| 353 |
Taylor WS, Pearson J, Miller A, Schmeier S, Frizelle FA, Purcell RV. MinION Sequencing of colorectal cancer tumour microbiomes – a comparison with amplicon-based and RNA-Sequencing.. [DOI: 10.1101/662270] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 354 |
Mcclure R, Genco CA. Strategies for Global RNA Sequencing of the Human Pathogen Neisseria gonorrhoeae. In: Christodoulides M, editor. Neisseria gonorrhoeae. New York: Springer; 2019. pp. 163-83. [DOI: 10.1007/978-1-4939-9496-0_11] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 355 |
Purahong W, Mapook A, Wu YT, Chen CT. Characterization of the Castanopsis carlesii Deadwood Mycobiome by Pacbio Sequencing of the Full-Length Fungal Nuclear Ribosomal Internal Transcribed Spacer (ITS). Front Microbiol 2019;10:983. [PMID: 31191462 DOI: 10.3389/fmicb.2019.00983] [Cited by in Crossref: 11] [Cited by in F6Publishing: 14] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 356 |
Gillingham MA, Montero BK, Wihelm K, Grudzus K, Sommer S, Santos PS. A novel workflow to improve multi-locus genotyping of wildlife species: an experimental set-up with a known model system.. [DOI: 10.1101/638288] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 357 |
Babarinde IA, Li Y, Hutchins AP. Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts. Comput Struct Biotechnol J 2019;17:628-37. [PMID: 31193391 DOI: 10.1016/j.csbj.2019.04.012] [Cited by in Crossref: 21] [Cited by in F6Publishing: 21] [Article Influence: 5.3] [Reference Citation Analysis]
|
| 358 |
Mantere T, Kersten S, Hoischen A. Long-Read Sequencing Emerging in Medical Genetics. Front Genet 2019;10:426. [PMID: 31134132 DOI: 10.3389/fgene.2019.00426] [Cited by in Crossref: 187] [Cited by in F6Publishing: 190] [Article Influence: 46.8] [Reference Citation Analysis]
|
| 359 |
He HJ, Stein EV, Konigshofer Y, Forbes T, Tomson FL, Garlick R, Yamada E, Godfrey T, Abe T, Tamura K, Borges M, Goggins M, Elmore S, Gulley ML, Larson JL, Ringel L, Haynes BC, Karlovich C, Williams PM, Garnett A, Ståhlberg A, Filges S, Sorbara L, Young MR, Srivastava S, Cole KD. Multilaboratory Assessment of a New Reference Material for Quality Assurance of Cell-Free Tumor DNA Measurements. J Mol Diagn 2019;21:658-76. [PMID: 31055023 DOI: 10.1016/j.jmoldx.2019.03.006] [Cited by in Crossref: 9] [Cited by in F6Publishing: 11] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 360 |
Pereira De Martinis EC, Almeida OGGD. Relating next-generation sequencing and bioinformatics concepts to routine microbiological testing. Electron J Gen Med 2019;16:em136. [DOI: 10.29333/ejgm/108690] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 361 |
Kim H, Lee J, Lee K. Culturable bacteria diversity in surface water–groundwater exchange zones by 16S rRNA gene analysis. jgsk 2019;55:237-246. [DOI: 10.14770/jgsk.2019.55.2.237] [Reference Citation Analysis]
|
| 362 |
Marín de Evsikova C, Raplee ID, Lockhart J, Jaimes G, Evsikov AV. The Transcriptomic Toolbox: Resources for Interpreting Large Gene Expression Data within a Precision Medicine Context for Metabolic Disease Atherosclerosis. J Pers Med 2019;9:E21. [PMID: 31032818 DOI: 10.3390/jpm9020021] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 363 |
Glenn TC, Pierson TW, Bayona-vásquez NJ, Kieran TJ, Hoffberg SL, Thomas JC, Lefever DE, Finger JW, Gao B, Bian X, Louha S, Kolli RT, Bentley K, Rushmore J, Wong K, Shaw TI, Rothrock MJ, Mckee AM, Guo TL, Mauricio R, Molina M, Cummings BS, Lash LH, Lu K, Gilbert GS, Hubbell SP, Faircloth BC. Adapterama II: Universal amplicon sequencing on Illumina platforms (TaggiMatrix).. [DOI: 10.1101/619544] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 364 |
Wang HL, Lei T, Xia WQ, Cameron SL, Liu YQ, Zhang Z, Gowda MMN, De Barro P, Navas-Castillo J, Omongo CA, Delatte H, Lee KY, Patel MV, Krause-Sakate R, Ng J, Wu SL, Fiallo-Olivé E, Liu SS, Colvin J, Wang XW. Insight into the microbial world of Bemisia tabaci cryptic species complex and its relationships with its host. Sci Rep 2019;9:6568. [PMID: 31024030 DOI: 10.1038/s41598-019-42793-8] [Cited by in Crossref: 19] [Cited by in F6Publishing: 20] [Article Influence: 4.8] [Reference Citation Analysis]
|
| 365 |
Kim J, Guk JH, Mun SH, An JU, Song H, Kim J, Ryu S, Jeon B, Cho S. Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination. Microbiome 2019;7:67. [PMID: 31027515 DOI: 10.1186/s40168-019-0680-z] [Cited by in Crossref: 11] [Cited by in F6Publishing: 13] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 366 |
Hsieh HY, Peng YH, Lin SF, Chen LC, Yu TC, Chiou CF, Lee J. Triple-Junction Optoelectronic Sensor with Nanophotonic Layer Integration for Single-Molecule Level Decoding. ACS Nano 2019;13:4486-95. [PMID: 30856319 DOI: 10.1021/acsnano.9b00019] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 367 |
Slatko BE, Gardner AF, Ausubel FM. Overview of Next-Generation Sequencing Technologies. Curr Protoc Mol Biol. 2018;122:e59. [PMID: 29851291 DOI: 10.1002/cpmb.59] [Cited by in Crossref: 260] [Cited by in F6Publishing: 276] [Article Influence: 65.0] [Reference Citation Analysis]
|
| 368 |
Cheng M, Yan X, He J, Qiu J, Chen Q. Comparative genome analysis reveals the evolution of chloroacetanilide herbicide mineralization in Sphingomonas wittichii DC-6. Arch Microbiol 2019;201:907-18. [PMID: 30997539 DOI: 10.1007/s00203-019-01660-w] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 369 |
Lefoulon E, Vaisman N, Frydman HM, Sun L, Voland L, Foster JM, Slatko BE. Large Enriched Fragment Targeted Sequencing (LEFT-SEQ) Applied to Capture of Wolbachia Genomes. Sci Rep 2019;9:5939. [PMID: 30976027 DOI: 10.1038/s41598-019-42454-w] [Cited by in Crossref: 17] [Cited by in F6Publishing: 17] [Article Influence: 4.3] [Reference Citation Analysis]
|
| 370 |
Bhuyan MSI, Pe’er I, Rahman MS. SICaRiO: Short Indel Call filteRing with bOosting.. [DOI: 10.1101/601450] [Reference Citation Analysis]
|
| 371 |
Yuan J, Tickner J, Mullin BH, Zhao J, Zeng Z, Morahan G, Xu J. Advanced Genetic Approaches in Discovery and Characterization of Genes Involved With Osteoporosis in Mouse and Human. Front Genet 2019;10:288. [PMID: 31001327 DOI: 10.3389/fgene.2019.00288] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 3.5] [Reference Citation Analysis]
|
| 372 |
Veeckman E, Van Glabeke S, Haegeman A, Muylle H, van Parijs FRD, Byrne SL, Asp T, Studer B, Rohde A, Roldán-Ruiz I, Vandepoele K, Ruttink T. Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne). DNA Res 2019;26:1-12. [PMID: 30325414 DOI: 10.1093/dnares/dsy033] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 373 |
Motazedi E, Finkers R, Maliepaard C, de Ridder D. Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study. Brief Bioinform 2018;19:387-403. [PMID: 28065918 DOI: 10.1093/bib/bbw126] [Cited by in Crossref: 17] [Cited by in F6Publishing: 25] [Article Influence: 4.3] [Reference Citation Analysis]
|
| 374 |
Philips JG, Dudley KJ, Waterhouse PM, Hellens RP. The Rapid Methylation of T-DNAs Upon Agrobacterium Inoculation in Plant Leaves. Front Plant Sci 2019;10:312. [PMID: 30930927 DOI: 10.3389/fpls.2019.00312] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 375 |
Kijak GH, Sanders-Buell E, Pham P, Harbolick EA, Oropeza C, O'Sullivan AM, Bose M, Beckett CG, Milazzo M, Robb ML, Peel SA, Scott PT, Michael NL, Armstrong AW, Kim JH, Brett-Major DM, Tovanabutra S. Next-generation sequencing of HIV-1 single genome amplicons. Biomol Detect Quantif 2019;17:100080. [PMID: 30923677 DOI: 10.1016/j.bdq.2019.01.002] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 376 |
Wei S, Weiss ZR, Gaur P, Forman E, Williams Z. Rapid preimplantation genetic screening using a handheld, nanopore-based DNA sequencer. Fertil Steril 2018;110:910-916.e2. [PMID: 30316437 DOI: 10.1016/j.fertnstert.2018.06.014] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 377 |
Antwerpen MH, Georgi E, Nikolic A, Zoeller G, Wohlsein P, Baumgärtner W, Peyrefitte C, Charrel R, Meyer H. Use of Next Generation Sequencing to study two cowpox virus outbreaks. PeerJ 2019;7:e6561. [PMID: 30847261 DOI: 10.7717/peerj.6561] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 378 |
Charalampous T, Kay GL, O'grady J. Applying clinical metagenomics for the detection and characterisation of respiratory infections. The Lung Microbiome 2019. [DOI: 10.1183/2312508x.10015618] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 379 |
Bravo GA, Antonelli A, Bacon CD, Bartoszek K, Blom MPK, Huynh S, Jones G, Knowles LL, Lamichhaney S, Marcussen T, Morlon H, Nakhleh LK, Oxelman B, Pfeil B, Schliep A, Wahlberg N, Werneck FP, Wiedenhoeft J, Willows-Munro S, Edwards SV. Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics. PeerJ 2019;7:e6399. [PMID: 30783571 DOI: 10.7717/peerj.6399] [Cited by in Crossref: 76] [Cited by in F6Publishing: 80] [Article Influence: 19.0] [Reference Citation Analysis]
|
| 380 |
Fu S, Wang A, Au KF. A comparative evaluation of hybrid error correction methods for error-prone long reads. Genome Biol 2019;20:26. [PMID: 30717772 DOI: 10.1186/s13059-018-1605-z] [Cited by in Crossref: 69] [Cited by in F6Publishing: 73] [Article Influence: 17.3] [Reference Citation Analysis]
|
| 381 |
Kozińska A, Seweryn P, Sitkiewicz I. A crash course in sequencing for a microbiologist. J Appl Genet 2019;60:103-11. [PMID: 30684135 DOI: 10.1007/s13353-019-00482-2] [Cited by in Crossref: 16] [Cited by in F6Publishing: 17] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 382 |
Jabeen S, Yap HY, Abdullah FFJ, Zakaria Z, Isa NM, Tan YC, Joo YS, Satharasinghe DA, Omar AR. Complete Genome Sequence Analysis and Characterization of Selected Iron Regulation Genes of Pasteurella Multocida Serotype A Strain PMTB2.1. Genes (Basel) 2019;10:E81. [PMID: 30691021 DOI: 10.3390/genes10020081] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 383 |
Kistenich S, Halvorsen R, Schrøder-nielsen A, Thorbek L, Timdal E, Bendiksby M. DNA Sequencing Historical Lichen Specimens. Front Ecol Evol 2019;7:5. [DOI: 10.3389/fevo.2019.00005] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 384 |
Suckling L, McFarlane C, Sawyer C, Chambers SP, Kitney RI, McClymont DW, Freemont PS. Miniaturisation of high-throughput plasmid DNA library preparation for next-generation sequencing using multifactorial optimisation. Synth Syst Biotechnol 2019;4:57-66. [PMID: 30723818 DOI: 10.1016/j.synbio.2019.01.002] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 385 |
Liu Z, Peasley AM, Yang J, Li Y, Guan G, Luo J, Yin H, Brayton KA. The Anaplasma ovis genome reveals a high proportion of pseudogenes. BMC Genomics 2019;20:69. [PMID: 30665414 DOI: 10.1186/s12864-018-5374-6] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 386 |
Guerrero-Sanchez VM, Maldonado-Alconada AM, Amil-Ruiz F, Verardi A, Jorrín-Novo JV, Rey MD. Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome. PLoS One 2019;14:e0210356. [PMID: 30650136 DOI: 10.1371/journal.pone.0210356] [Cited by in Crossref: 20] [Cited by in F6Publishing: 22] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 387 |
Spettel K, Barousch W, Makristathis A, Zeller I, Nehr M, Selitsch B, Lackner M, Rath PM, Steinmann J, Willinger B. Analysis of antifungal resistance genes in Candida albicans and Candida glabrata using next generation sequencing. PLoS One 2019;14:e0210397. [PMID: 30629653 DOI: 10.1371/journal.pone.0210397] [Cited by in Crossref: 39] [Cited by in F6Publishing: 44] [Article Influence: 9.8] [Reference Citation Analysis]
|
| 388 |
Malla MA, Dubey A, Kumar A, Yadav S, Hashem A, Abd Allah EF. Exploring the Human Microbiome: The Potential Future Role of Next-Generation Sequencing in Disease Diagnosis and Treatment. Front Immunol. 2018;9:2868. [PMID: 30666248 DOI: 10.3389/fimmu.2018.02868] [Cited by in Crossref: 138] [Cited by in F6Publishing: 149] [Article Influence: 34.5] [Reference Citation Analysis]
|
| 389 |
Hilário HO, Batista TM, Franco GR. Genomics of Antarctic Fungi: A New Frontier. Fungi of Antarctica 2019. [DOI: 10.1007/978-3-030-18367-7_15] [Reference Citation Analysis]
|
| 390 |
Pucker B, Schilbert HM. Genomics and Transcriptomics Advance in Plant Sciences. Energy, Environment, and Sustainability 2019. [DOI: 10.1007/978-981-15-0690-1_19] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 391 |
Gupta N, Verma VK. Next-Generation Sequencing and Its Application: Empowering in Public Health Beyond Reality. Microorganisms for Sustainability 2019. [DOI: 10.1007/978-981-13-8844-6_15] [Cited by in Crossref: 7] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 392 |
Vahdati K, Arab MM, Sarikhani S, Sadat-hosseini M, Leslie CA, Brown PJ. Advances in Persian Walnut (Juglans regia L.) Breeding Strategies. Advances in Plant Breeding Strategies: Nut and Beverage Crops 2019. [DOI: 10.1007/978-3-030-23112-5_11] [Cited by in Crossref: 14] [Article Influence: 3.5] [Reference Citation Analysis]
|
| 393 |
Hill A, Gupta R, Zhao D, Vankina R, Amanam I, Salgia R. Targeted Therapies in Non-small-Cell Lung Cancer. Cancer Treat Res 2019;178:3-43. [PMID: 31209840 DOI: 10.1007/978-3-030-16391-4_1] [Cited by in Crossref: 10] [Cited by in F6Publishing: 12] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 394 |
Ghosh A, Bhadury P. Methods of Assessment of Microbial Diversity in Natural Environments. Microbial Diversity in the Genomic Era. Elsevier; 2019. pp. 3-14. [DOI: 10.1016/b978-0-12-814849-5.00001-0] [Cited by in Crossref: 6] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 395 |
Chen L, Wong G. Transcriptome Informatics. Encyclopedia of Bioinformatics and Computational Biology 2019. [DOI: 10.1016/b978-0-12-809633-8.20204-5] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 396 |
Kaul KL. Practicing Pathology in the Post-genomic Era: Challenges and Opportunities. Genomic Applications in Pathology 2019. [DOI: 10.1007/978-3-319-96830-8_1] [Reference Citation Analysis]
|
| 397 |
Rodriguez-araujo G, Krentz AJ. Utility of Invasive and Non-invasive Cardiovascular Research Methodologies in Drug Development for Diabetes, Obesity and NAFLD/NASH. Translational Research Methods in Diabetes, Obesity, and Nonalcoholic Fatty Liver Disease 2019. [DOI: 10.1007/978-3-030-11748-1_11] [Reference Citation Analysis]
|
| 398 |
Salam LB. Metagenomic insights into the diversity and functions of microbial assemblages in lakes. Freshwater Microbiology 2019. [DOI: 10.1016/b978-0-12-817495-1.00005-0] [Cited by in Crossref: 2] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 399 |
Dam B, Misra A, Banerjee S. Role of Gut Microbiota in Combating Oxidative Stress. Oxidative Stress in Microbial Diseases 2019. [DOI: 10.1007/978-981-13-8763-0_4] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 3.5] [Reference Citation Analysis]
|
| 400 |
Wentz TG, Hu L, Hammack TS, Brown EW, Sharma SK, Allard MW. Next Generation Sequencing for the Detection of Foodborne Microbial Pathogens. Defense Against Biological Attacks 2019. [DOI: 10.1007/978-3-030-03071-1_14] [Reference Citation Analysis]
|
| 401 |
Ghosh A, Mehta A, Khan AM. Metagenomic Analysis and its Applications. Encyclopedia of Bioinformatics and Computational Biology 2019. [DOI: 10.1016/b978-0-12-809633-8.20178-7] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 3.8] [Reference Citation Analysis]
|
| 402 |
Srinivasan S, Batra J. Single Nucleotide Polymorphism Typing. Encyclopedia of Bioinformatics and Computational Biology 2019. [DOI: 10.1016/b978-0-12-809633-8.20127-1] [Reference Citation Analysis]
|
| 403 |
Reis-Cunha JL, Bartholomeu DC. Trypanosoma cruzi Genome Assemblies: Challenges and Milestones of Assembling a Highly Repetitive and Complex Genome. Methods Mol Biol 2019;1955:1-22. [PMID: 30868515 DOI: 10.1007/978-1-4939-9148-8_1] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 404 |
Bai C, Morga B, Rosani U, Shi J, Li C, Xin L, Wang C. Long-range PCR and high-throughput sequencing of Ostreid herpesvirus 1 indicate high genetic diversity and complex evolution process. Virology 2019;526:81-90. [DOI: 10.1016/j.virol.2018.09.026] [Cited by in Crossref: 9] [Cited by in F6Publishing: 11] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 405 |
Delsing Malmberg E, Rehammar A, Pereira MB, Abrahamsson J, Samuelsson T, Ståhlman S, Asp J, Tierens A, Palmqvist L, Kristiansson E, Fogelstrand L. Accurate and Sensitive Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Deep Sequencing of Single Nucleotide Variations. The Journal of Molecular Diagnostics 2019;21:149-62. [DOI: 10.1016/j.jmoldx.2018.08.004] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 3.3] [Reference Citation Analysis]
|
| 406 |
Ramakodi MP, Eaaswarkhanth M. Genomic Revolution-Driven Cancer Research. Essentials of Bioinformatics, Volume II 2019. [DOI: 10.1007/978-3-030-18375-2_4] [Reference Citation Analysis]
|
| 407 |
Kesarwani AK, Malhotra A, Srivastava A, Ananda G, Ashoor H, Kumar P, Kesharwani RK, Sarsani VK, Li Y, George J, Karuturi RKM. Genome Informatics. Encyclopedia of Bioinformatics and Computational Biology 2019. [DOI: 10.1016/b978-0-12-809633-8.20223-9] [Reference Citation Analysis]
|
| 408 |
Fenaux H, Chassaing M, Berger S, Gantzer C, Bertrand I, Schvoerer E. Transmission of hepatitis E virus by water: An issue still pending in industrialized countries. Water Res 2019;151:144-57. [PMID: 30594083 DOI: 10.1016/j.watres.2018.12.014] [Cited by in Crossref: 29] [Cited by in F6Publishing: 31] [Article Influence: 5.8] [Reference Citation Analysis]
|
| 409 |
Varongchayakul N, Hersey J, Squires A, Meller A, Grinstaff M. A Solid-State Hard Microfluidic-Nanopore Biosensor with Multilayer Fluidics and On-Chip Bioassay/Purification Chamber. Adv Funct Mater 2018;28:1804182. [PMID: 31632230 DOI: 10.1002/adfm.201804182] [Cited by in Crossref: 20] [Cited by in F6Publishing: 21] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 410 |
Maltez Thomas A, Prata Lima F, Maria Silva Moura L, Maria da Silva A, Dias-Neto E, Setubal JC. Comparative Metagenomics. Methods Mol Biol 2018;1704:243-60. [PMID: 29277868 DOI: 10.1007/978-1-4939-7463-4_8] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 411 |
Coskun AF, Topkaya SN, Yetisen AK, Cetin AE. Portable Multiplex Optical Assays. Advanced Optical Materials 2019;7:1801109. [DOI: 10.1002/adom.201801109] [Cited by in Crossref: 16] [Cited by in F6Publishing: 15] [Article Influence: 3.2] [Reference Citation Analysis]
|
| 412 |
Bogdanova VS, Mglinets AV, Shatskaya NV, Kosterin OE, Solovyev VI, Vasiliev GV. Cryptic divergences in the genus Pisum L. (peas), as revealed by phylogenetic analysis of plastid genomes. Molecular Phylogenetics and Evolution 2018;129:280-90. [DOI: 10.1016/j.ympev.2018.09.002] [Cited by in Crossref: 13] [Cited by in F6Publishing: 10] [Article Influence: 2.6] [Reference Citation Analysis]
|
| 413 |
Lisi S, Fiore E, Scarano S, Pascale E, Boehman Y, Ducongé F, Chierici S, Minunni M, Peyrin E, Ravelet C. Non-SELEX isolation of DNA aptamers for the homogeneous-phase fluorescence anisotropy sensing of tau Proteins. Analytica Chimica Acta 2018;1038:173-81. [DOI: 10.1016/j.aca.2018.07.029] [Cited by in Crossref: 37] [Cited by in F6Publishing: 37] [Article Influence: 7.4] [Reference Citation Analysis]
|
| 414 |
Profaizer T, Kumánovics A. Human Leukocyte Antigen Typing by Next-Generation Sequencing. Clinics in Laboratory Medicine 2018;38:565-78. [DOI: 10.1016/j.cll.2018.07.006] [Cited by in Crossref: 18] [Cited by in F6Publishing: 15] [Article Influence: 3.6] [Reference Citation Analysis]
|
| 415 |
Ayele GT, Monfray S, Ecoffey S, Boeuf F, Cloarec J, Drouin D, Souifi A. Highly Performant Integrated pH-Sensor Using the Gate Protection Diode in the BEOL of Industrial FDSOI. 2018 IEEE International Electron Devices Meeting (IEDM) 2018. [DOI: 10.1109/iedm.2018.8614713] [Reference Citation Analysis]
|
| 416 |
Nicholson AL, Pasquinelli AE. Tales of Detailed Poly(A) Tails. Trends Cell Biol 2019;29:191-200. [PMID: 30503240 DOI: 10.1016/j.tcb.2018.11.002] [Cited by in Crossref: 83] [Cited by in F6Publishing: 86] [Article Influence: 16.6] [Reference Citation Analysis]
|
| 417 |
Lyu P, Kwok HF. High-throughput Strategy Accelerates the Progress of Marine Anticancer Peptide Drug Development. Recent Pat Anticancer Drug Discov 2019;14:2-4. [PMID: 30474536 DOI: 10.2174/1574892813999181114152127] [Reference Citation Analysis]
|
| 418 |
Ely B, Wilson K, Ross K, Ingram D, Lewter T, Herring J, Duncan D, Aikins A, Scott D. Genome Comparisons of Wild Isolates of Caulobacter crescentus Reveal Rates of Inversion and Horizontal Gene Transfer. Curr Microbiol 2019;76:159-67. [PMID: 30483871 DOI: 10.1007/s00284-018-1606-x] [Cited by in Crossref: 9] [Cited by in F6Publishing: 11] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 419 |
Sapna G, Gokul S. Next generation sequencing in oral disease diagnostics. World J Stomatol 2018; 6(2): 6-10 [DOI: 10.5321/wjs.v6.i2.6] [Cited by in CrossRef: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 420 |
Kleftogiannis D, Punta M, Jayaram A, Sandhu S, Wong SQ, Gasi Tandefelt D, Conteduca V, Wetterskog D, Attard G, Lise S. Identification of single nucleotide variants using position-specific error estimation in deep sequencing data.. [DOI: 10.1101/475947] [Reference Citation Analysis]
|
| 421 |
Bensasson D, Dicks J, Ludwig JM, Bond CJ, Elliston A, Roberts IN, James SA. Diverse Lineages of Candida albicans Live on Old Oaks. Genetics 2019;211:277-88. [PMID: 30463870 DOI: 10.1534/genetics.118.301482] [Cited by in Crossref: 43] [Cited by in F6Publishing: 44] [Article Influence: 8.6] [Reference Citation Analysis]
|
| 422 |
Yu Z, Ding Y, Yin J, Yu D, Zhang J, Zhang M, Ding M, Zhong W, Qiu J, Li J. Dissemination of Genetic Acquisition/Loss Provides a Variety of Quorum Sensing Regulatory Properties in Pseudoalteromonas. Int J Mol Sci 2018;19:E3636. [PMID: 30453700 DOI: 10.3390/ijms19113636] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 423 |
Redmond AK, Macqueen DJ, Dooley H. Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets. BMC Evol Biol 2018;18:169. [PMID: 30442091 DOI: 10.1186/s12862-018-1290-2] [Cited by in Crossref: 18] [Cited by in F6Publishing: 18] [Article Influence: 3.6] [Reference Citation Analysis]
|
| 424 |
Li Z, Yi L, Gao P, Zhang R, Li J. The cornerstone of integrating circulating tumor DNA into cancer management. Biochim Biophys Acta Rev Cancer 2019;1871:1-11. [PMID: 30419316 DOI: 10.1016/j.bbcan.2018.11.002] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 1.4] [Reference Citation Analysis]
|
| 425 |
Di Resta C, Ferrari M. Next Generation Sequencing: From Research Area to Clinical Practice. EJIFCC 2018;29:215-20. [PMID: 30479607] [Reference Citation Analysis]
|
| 426 |
Ezeokoli OT, Adeleke RA, Bezuidenhout CC. Core bacterial community of soy-daddawa: Insights from high-throughput DNA metabarcoding. LWT 2018;97:61-6. [DOI: 10.1016/j.lwt.2018.06.039] [Cited by in Crossref: 13] [Cited by in F6Publishing: 14] [Article Influence: 2.6] [Reference Citation Analysis]
|
| 427 |
Barik S, Das S, Vikalo H. QSdpR: Viral quasispecies reconstruction via correlation clustering. Genomics 2018;110:375-81. [DOI: 10.1016/j.ygeno.2017.12.007] [Cited by in Crossref: 17] [Cited by in F6Publishing: 16] [Article Influence: 3.4] [Reference Citation Analysis]
|
| 428 |
Arulandhu AJ, van Dijk J, Staats M, Hagelaar R, Voorhuijzen M, Molenaar B, van Hoof R, Li R, Yang L, Shi J, Scholtens I, Kok E. NGS-based amplicon sequencing approach; towards a new era in GMO screening and detection. Food Control 2018;93:201-10. [DOI: 10.1016/j.foodcont.2018.06.014] [Cited by in Crossref: 12] [Cited by in F6Publishing: 12] [Article Influence: 2.4] [Reference Citation Analysis]
|
| 429 |
Watherston J, Mcnevin D, Gahan M, Bruce D, Ward J. Current and emerging tools for the recovery of genetic information from post mortem samples: New directions for disaster victim identification. Forensic Science International: Genetics 2018;37:270-82. [DOI: 10.1016/j.fsigen.2018.08.016] [Cited by in Crossref: 27] [Cited by in F6Publishing: 22] [Article Influence: 5.4] [Reference Citation Analysis]
|
| 430 |
Fu Y, Li C, Dong S, Wu Y, Zhangsun D, Luo S. Discovery Methodology of Novel Conotoxins from Conus Species. Mar Drugs 2018;16:E417. [PMID: 30380764 DOI: 10.3390/md16110417] [Cited by in Crossref: 19] [Cited by in F6Publishing: 23] [Article Influence: 3.8] [Reference Citation Analysis]
|
| 431 |
Zahariev M, Chen W, Visagie CM, Lévesque CA. Cluster oligonucleotide signatures for rapid identification by sequencing. BMC Bioinformatics 2018;19:395. [PMID: 30522439 DOI: 10.1186/s12859-018-2363-3] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 432 |
Antwerpen MH, Georgi E, Nikolic A, Zöller G, Wohlsein P, Baumgärtner W, Peyrefitte C, Charell R, Meyer H. Use of Next Generation Sequencing to study two cowpox virus outbreaks.. [DOI: 10.1101/444141] [Reference Citation Analysis]
|
| 433 |
Sohn JI, Nam JW. The present and future of de novo whole-genome assembly. Brief Bioinform 2018;19:23-40. [PMID: 27742661 DOI: 10.1093/bib/bbw096] [Cited by in Crossref: 49] [Cited by in F6Publishing: 85] [Article Influence: 9.8] [Reference Citation Analysis]
|
| 434 |
Dziąbowska K, Czaczyk E, Nidzworski D. Detection Methods of Human and Animal Influenza Virus-Current Trends. Biosensors (Basel) 2018;8:E94. [PMID: 30340339 DOI: 10.3390/bios8040094] [Cited by in Crossref: 39] [Cited by in F6Publishing: 42] [Article Influence: 7.8] [Reference Citation Analysis]
|
| 435 |
Xue Z, Kable ME, Marco ML. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products. mSphere 2018;3:e00410-18. [PMID: 30333179 DOI: 10.1128/mSphere.00410-18] [Cited by in Crossref: 29] [Cited by in F6Publishing: 36] [Article Influence: 5.8] [Reference Citation Analysis]
|
| 436 |
Yang R, Liu G, Chen T, Zhang W, Zhang G, Chang S. The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil. Stand Genomic Sci 2018;13:23. [PMID: 30338026 DOI: 10.1186/s40793-018-0328-9] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 437 |
Mota-Gutierrez J, Ferrocino I, Rantsiou K, Cocolin L. Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene. Int J Food Microbiol 2019;290:132-40. [PMID: 30340111 DOI: 10.1016/j.ijfoodmicro.2018.10.010] [Cited by in Crossref: 27] [Cited by in F6Publishing: 28] [Article Influence: 5.4] [Reference Citation Analysis]
|
| 438 |
Koh HY, Lee JH. Brain Somatic Mutations in Epileptic Disorders. Mol Cells 2018;41:881-8. [PMID: 30352490 DOI: 10.14348/molcells.2018.0247] [Cited by in F6Publishing: 10] [Reference Citation Analysis]
|
| 439 |
Pichon M, Simon B, Valette M, Bal A, Picard C, Escuret V, Ottmann M, Gillet Y, Ader F, Lina B, Josset L. Evolution of influenza genome diversity during infection in immunocompetent patients.. [DOI: 10.1101/435263] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 440 |
Wang H, Kuang S, Lang Q, Yu W. Effects of Aged Oil Sludge on Soil Physicochemical Properties and Fungal Diversity Revealed by High-Throughput Sequencing Analysis. Archaea 2018;2018:9264259. [PMID: 30258283 DOI: 10.1155/2018/9264259] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 1.4] [Reference Citation Analysis]
|
| 441 |
Carter TC, He MM. Challenges of Identifying Clinically Actionable Genetic Variants for Precision Medicine. J Healthc Eng 2016;2016. [PMID: 27195526 DOI: 10.1155/2016/3617572] [Cited by in Crossref: 24] [Cited by in F6Publishing: 24] [Article Influence: 4.8] [Reference Citation Analysis]
|
| 442 |
H. G, G. MT. Next-generation sequencing platforms for latest livestock reference genome assemblies. Afr J Biotechnol 2018;17:1232-1240. [DOI: 10.5897/ajb2018.16605] [Reference Citation Analysis]
|
| 443 |
Houston R, Mayes C, King JL, Hughes-Stamm S, Gangitano D. Massively parallel sequencing of 12 autosomal STRs in Cannabis sativa. Electrophoresis 2018;39:2906-11. [PMID: 30221375 DOI: 10.1002/elps.201800152] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.6] [Reference Citation Analysis]
|
| 444 |
Laothanachareon T, Tamayo-Ramos JA, Nijsse B, Schaap PJ. Forward Genetics by Genome Sequencing Uncovers the Central Role of the Aspergillus niger goxB Locus in Hydrogen Peroxide Induced Glucose Oxidase Expression. Front Microbiol 2018;9:2269. [PMID: 30319579 DOI: 10.3389/fmicb.2018.02269] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 445 |
Woerner AE, Ambers A, Wendt FR, King JL, Moura-neto RS, Silva R, Budowle B. Evaluation of the precision ID mtDNA whole genome panel on two massively parallel sequencing systems. Forensic Science International: Genetics 2018;36:213-24. [DOI: 10.1016/j.fsigen.2018.07.015] [Cited by in Crossref: 25] [Cited by in F6Publishing: 21] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 446 |
Sulo P, Szabóová D, Bielik P, Poláková S, Šoltys K, Jatzová K, Szemes T. The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the 'yeast mitochondrial genetic code'. DNA Res 2017;24:571-83. [PMID: 28992063 DOI: 10.1093/dnares/dsx026] [Cited by in Crossref: 24] [Cited by in F6Publishing: 23] [Article Influence: 4.8] [Reference Citation Analysis]
|
| 447 |
John D, Weirick T, Dimmeler S, Uchida S. RNAEditor: easy detection of RNA editing events and the introduction of editing islands. Brief Bioinform 2017;18:993-1001. [PMID: 27694136 DOI: 10.1093/bib/bbw087] [Cited by in Crossref: 22] [Cited by in F6Publishing: 36] [Article Influence: 4.4] [Reference Citation Analysis]
|
| 448 |
Magi A, Giusti B, Tattini L. Characterization of MinION nanopore data for resequencing analyses. Brief Bioinform 2017;18:940-53. [PMID: 27559152 DOI: 10.1093/bib/bbw077] [Cited by in Crossref: 18] [Cited by in F6Publishing: 30] [Article Influence: 3.6] [Reference Citation Analysis]
|
| 449 |
Liao X, Zhao Y, Kong X, Khan A, Zhou B, Liu D, Kashif MH, Chen P, Wang H, Zhou R. Complete sequence of kenaf (Hibiscus cannabinus) mitochondrial genome and comparative analysis with the mitochondrial genomes of other plants. Sci Rep 2018;8:12714. [PMID: 30143661 DOI: 10.1038/s41598-018-30297-w] [Cited by in Crossref: 25] [Cited by in F6Publishing: 29] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 450 |
Hiemenz MC, Ostrow DG, Busse TM, Buckley J, Maglinte DT, Bootwalla M, Done J, Ji J, Raca G, Ryutov A, Xu X, Zhen CJ, Conroy JM, Hazard FK, Deignan JL, Rogers BB, Treece AL, Parham DM, Gai X, Judkins AR, Triche TJ, Biegel JA. OncoKids: A Comprehensive Next-Generation Sequencing Panel for Pediatric Malignancies. J Mol Diagn 2018;20:765-76. [PMID: 30138724 DOI: 10.1016/j.jmoldx.2018.06.009] [Cited by in Crossref: 41] [Cited by in F6Publishing: 36] [Article Influence: 8.2] [Reference Citation Analysis]
|
| 451 |
Bulbul O, Filoglu G. Development of a SNP panel for predicting biogeographical ancestry and phenotype using massively parallel sequencing. ELECTROPHORESIS 2018;39:2743-51. [DOI: 10.1002/elps.201800243] [Cited by in Crossref: 13] [Cited by in F6Publishing: 14] [Article Influence: 2.6] [Reference Citation Analysis]
|
| 452 |
Zhu FY, Chen MX, Ye NH, Qiao WM, Gao B, Law WK, Tian Y, Zhang D, Zhang D, Liu TY, Hu QJ, Cao YY, Su ZZ, Zhang J, Liu YG. Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants. Plant Methods 2018;14:69. [PMID: 30123314 DOI: 10.1186/s13007-018-0337-0] [Cited by in Crossref: 66] [Cited by in F6Publishing: 68] [Article Influence: 13.2] [Reference Citation Analysis]
|
| 453 |
Wang J, Li B, Yao L, Meng Y, Ma X, Lai Y, Si E, Ren P, Yang K, Shang X, Wang H. Comparative transcriptome analysis of genes involved in Na+ transport in the leaves of halophyte Halogeton glomeratus. Gene 2018;678:407-16. [PMID: 30096457 DOI: 10.1016/j.gene.2018.08.025] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 0.6] [Reference Citation Analysis]
|
| 454 |
Bush SJ, Freem L, MacCallum AJ, O'Dell J, Wu C, Afrasiabi C, Psifidi A, Stevens MP, Smith J, Summers KM, Hume DA. Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken. BMC Genomics 2018;19:594. [PMID: 30086717 DOI: 10.1186/s12864-018-4972-7] [Cited by in Crossref: 18] [Cited by in F6Publishing: 18] [Article Influence: 3.6] [Reference Citation Analysis]
|
| 455 |
Vakulskas CA, Dever DP, Rettig GR, Turk R, Jacobi AM, Collingwood MA, Bode NM, McNeill MS, Yan S, Camarena J, Lee CM, Park SH, Wiebking V, Bak RO, Gomez-Ospina N, Pavel-Dinu M, Sun W, Bao G, Porteus MH, Behlke MA. A high-fidelity Cas9 mutant delivered as a ribonucleoprotein complex enables efficient gene editing in human hematopoietic stem and progenitor cells. Nat Med 2018;24:1216-24. [PMID: 30082871 DOI: 10.1038/s41591-018-0137-0] [Cited by in Crossref: 409] [Cited by in F6Publishing: 417] [Article Influence: 81.8] [Reference Citation Analysis]
|
| 456 |
Sutton JT, Helmkampf M, Steiner CC, Bellinger MR, Korlach J, Hall R, Baybayan P, Muehling J, Gu J, Kingan S, Masuda BM, Ryder OA. A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species. Genes (Basel) 2018;9:E393. [PMID: 30071683 DOI: 10.3390/genes9080393] [Cited by in Crossref: 15] [Cited by in F6Publishing: 16] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 457 |
Gaikwad M, Ahirrao S. BLAST Using Big Data Technologies: A Survey. 2018 Fourth International Conference on Computing Communication Control and Automation (ICCUBEA) 2018. [DOI: 10.1109/iccubea.2018.8697496] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 458 |
Page AJ, Keane JA. Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus. PeerJ 2018;6:e5233. [PMID: 30083440 DOI: 10.7717/peerj.5233] [Cited by in Crossref: 14] [Cited by in F6Publishing: 13] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 459 |
Bürckert JP, Faison WJ, Mustin DE, Dubois ARSX, Sinner R, Hunewald O, Wienecke-Baldacchino A, Brieger A, Muller CP. High-throughput sequencing of murine immunoglobulin heavy chain repertoires using single side unique molecular identifiers on an Ion Torrent PGM. Oncotarget 2018;9:30225-39. [PMID: 30100985 DOI: 10.18632/oncotarget.25493] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 460 |
Delgado-Balderas JR, Garza-Rodriguez ML, Gomez-Macias GS, Barboza-Quintana A, Barboza-Quintana O, Cerda-Flores RM, Miranda-Maldonado I, Vazquez-Garcia HM, Valdez-Chapa LD, Antonio-Macedo M, Dean M, Barrera-Saldaña HA. Description of Genetic Variants in BRCA Genes in Mexican Patients with Ovarian Cancer: A First Step towards Implementing Personalized Medicine. Genes (Basel) 2018;9:E349. [PMID: 29997359 DOI: 10.3390/genes9070349] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 461 |
Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, Shin E, Schwarz KB, O'Brien SJ. Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis. PLoS One 2018;13:e0200423. [PMID: 29995946 DOI: 10.1371/journal.pone.0200423] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 462 |
Chen Q, Lan C, Zhao L, Wang J, Chen B, Chen YP. Recent advances in sequence assembly: principles and applications. Brief Funct Genomics 2017;16:361-78. [PMID: 28453648 DOI: 10.1093/bfgp/elx006] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 463 |
Fiannaca A, La Paglia L, La Rosa M, Lo Bosco G, Renda G, Rizzo R, Gaglio S, Urso A. Deep learning models for bacteria taxonomic classification of metagenomic data. BMC Bioinformatics 2018;19:198. [PMID: 30066629 DOI: 10.1186/s12859-018-2182-6] [Cited by in Crossref: 56] [Cited by in F6Publishing: 57] [Article Influence: 11.2] [Reference Citation Analysis]
|
| 464 |
Li H, Wu S, Ma X, Chen W, Zhang J, Duan S, Gao Y, Kui L, Huang W, Wu P, Shi R, Li Y, Wang Y, Li J, Guo X, Luo X, Li Q, Xiong C, Liu H, Gui M, Sheng J, Dong Y. The Genome Sequences of 90 Mushrooms. Sci Rep 2018;8:9982. [PMID: 29967427 DOI: 10.1038/s41598-018-28303-2] [Cited by in Crossref: 47] [Cited by in F6Publishing: 53] [Article Influence: 9.4] [Reference Citation Analysis]
|
| 465 |
Ramirez-busby S, Elghraoui A, Kim YB, Kim K, Valafar F. PBHoover and CigarRoller: a method for confident haploid variant calling on Pacific Biosciences data and its application to heterogeneous population analysis.. [DOI: 10.1101/360370] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.6] [Reference Citation Analysis]
|
| 466 |
Ricke SC, Kim SA, Shi Z, Park SH. Molecular-based identification and detection of Salmonella in food production systems: current perspectives. J Appl Microbiol 2018;125:313-27. [PMID: 29675864 DOI: 10.1111/jam.13888] [Cited by in Crossref: 23] [Cited by in F6Publishing: 23] [Article Influence: 4.6] [Reference Citation Analysis]
|
| 467 |
Fungtammasan A, Hannigan B. How well can we create phased, diploid, human genomes?: An assessment of FALCON-Unzip phasing using a human trio.. [DOI: 10.1101/262196] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 468 |
van Dijk EL, Jaszczyszyn Y, Naquin D, Thermes C. The Third Revolution in Sequencing Technology. Trends Genet 2018;34:666-81. [PMID: 29941292 DOI: 10.1016/j.tig.2018.05.008] [Cited by in Crossref: 495] [Cited by in F6Publishing: 514] [Article Influence: 99.0] [Reference Citation Analysis]
|
| 469 |
Hawkins JA, Jones SK Jr, Finkelstein IJ, Press WH. Indel-correcting DNA barcodes for high-throughput sequencing. Proc Natl Acad Sci U S A 2018;115:E6217-26. [PMID: 29925596 DOI: 10.1073/pnas.1802640115] [Cited by in Crossref: 37] [Cited by in F6Publishing: 37] [Article Influence: 7.4] [Reference Citation Analysis]
|
| 470 |
Yurkov AP, Kryukov AA, Gorbunova AO, Kojemyakov AP, Stepanova GV, Machs EM, Rodionov AV, Shishova MF. Molecular genetic identification of arbuscular mycorrhizal fungi. Ecological genetics 2018;16:11-23. [DOI: 10.17816/ecogen16211-23] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 471 |
Richard Albert J, Koike T, Younesy H, Thompson R, Bogutz AB, Karimi MM, Lorincz MC. Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA). BMC Genomics 2018;19:463. [PMID: 29907088 DOI: 10.1186/s12864-018-4835-2] [Cited by in Crossref: 13] [Cited by in F6Publishing: 14] [Article Influence: 2.6] [Reference Citation Analysis]
|
| 472 |
Soekojo CY, de Mel S, Ooi M, Yan B, Chng WJ. Potential Clinical Application of Genomics in Multiple Myeloma. Int J Mol Sci 2018;19:E1721. [PMID: 29890777 DOI: 10.3390/ijms19061721] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 473 |
Rathy R, Paul S, Ponesakki V, Kanniah P, Muthu SP, Arumugaperumal A, Sathiya Balasingh Thangapandi EJJ, Balakrishnan S, Jeyaprakash R, Sivasubramaniam S. Data on genome sequencing, analysis and annotation of a pathogenic Bacillus cereus 062011msu. Data Brief 2018;17:15-23. [PMID: 29876371 DOI: 10.1016/j.dib.2017.12.054] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 474 |
Bensasson D, Dicks J, Ludwig JM, Bond CJ, Elliston A, Roberts IN, James SA. Diverse lineages ofCandida albicanslive on old oaks.. [DOI: 10.1101/341032] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 475 |
Narrandes S, Xu W. Gene Expression Detection Assay for Cancer Clinical Use. J Cancer 2018;9:2249-65. [PMID: 30026820 DOI: 10.7150/jca.24744] [Cited by in Crossref: 50] [Cited by in F6Publishing: 55] [Article Influence: 10.0] [Reference Citation Analysis]
|
| 476 |
Alonso A, Barrio PA, Müller P, Köcher S, Berger B, Martin P, Bodner M, Willuweit S, Parson W, Roewer L, Budowle B. Current state-of-art of STR sequencing in forensic genetics. ELECTROPHORESIS 2018;39:2655-68. [DOI: 10.1002/elps.201800030] [Cited by in Crossref: 44] [Cited by in F6Publishing: 47] [Article Influence: 8.8] [Reference Citation Analysis]
|
| 477 |
Ayele GT, Monfray S, Ecoffey S, Boeuf F, Bon R, Cloarec J, Drouin D, Souifi A. Ultrahigh-Sensitive and CMOS Compatible ISFET Developed in BEOL of Industrial UTBB FDSOI. 2018 IEEE Symposium on VLSI Technology 2018. [DOI: 10.1109/vlsit.2018.8510686] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 478 |
Gates DJ, Pilson D, Smith SD. Filtering of target sequence capture individuals facilitates species tree construction in the plant subtribe Iochrominae (Solanaceae). Molecular Phylogenetics and Evolution 2018;123:26-34. [DOI: 10.1016/j.ympev.2018.02.002] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 1.6] [Reference Citation Analysis]
|
| 479 |
Salem SE, Maddox TW, Berg A, Antczak P, Ketley JM, Williams NJ, Archer DC. Variation in faecal microbiota in a group of horses managed at pasture over a 12-month period. Sci Rep 2018;8:8510. [PMID: 29855517 DOI: 10.1038/s41598-018-26930-3] [Cited by in Crossref: 41] [Cited by in F6Publishing: 43] [Article Influence: 8.2] [Reference Citation Analysis]
|
| 480 |
Picher ÁJ, Hernández F, Budeus B, Soriano E, Avila J. Human Brain Single Nucleotide Polymorphism: Validation of DNA Sequencing. J Alzheimers Dis Rep 2018;2:103-9. [PMID: 30480253 DOI: 10.3233/ADR-170039] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 481 |
Zhu S, Xu M, Wang H, Pan H, Wang G, Huang M. Study of spontaneous mutations in the transmission of poplar chloroplast genomes from mother to offspring. BMC Genomics 2018;19:411. [PMID: 29843600 DOI: 10.1186/s12864-018-4813-8] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.6] [Reference Citation Analysis]
|
| 482 |
Chen JW, Lau YY, Krishnan T, Chan KG, Chang CY. Recent Advances in Molecular Diagnosis of Pseudomonasaeruginosa Infection by State-of-the-Art Genotyping Techniques. Front Microbiol 2018;9:1104. [PMID: 29892277 DOI: 10.3389/fmicb.2018.01104] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 2.2] [Reference Citation Analysis]
|
| 483 |
Sun G, Qiu L, Cheng Z, Pan W, Qiu J, Zou C, Xie N, Liu S, Zhu P, Zeng J, Dai Y. Association of the characteristics of B- and T-cell repertoires with papillary thyroid carcinoma. Oncol Lett 2018;16:1584-92. [PMID: 30008841 DOI: 10.3892/ol.2018.8800] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 484 |
Wei ZG, Zhang SW. NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model. BMC Bioinformatics 2018;19:177. [PMID: 29788930 DOI: 10.1186/s12859-018-2208-0] [Cited by in Crossref: 18] [Cited by in F6Publishing: 18] [Article Influence: 3.6] [Reference Citation Analysis]
|
| 485 |
Lücking R, Hawksworth DL. Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them. IMA Fungus 2018;9:143-66. [PMID: 30018876 DOI: 10.5598/imafungus.2018.09.01.09] [Cited by in Crossref: 33] [Cited by in F6Publishing: 30] [Article Influence: 6.6] [Reference Citation Analysis]
|
| 486 |
Berthelier J, Casse N, Daccord N, Jamilloux V, Saint-Jean B, Carrier G. A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea. BMC Genomics 2018;19:378. [PMID: 29783941 DOI: 10.1186/s12864-018-4763-1] [Cited by in Crossref: 30] [Cited by in F6Publishing: 30] [Article Influence: 6.0] [Reference Citation Analysis]
|
| 487 |
Bukin Y, Buzoleva L, Golozubova Y, Galachyants Y. New Procedure of Raw Illumina MiSeq Data Filtering For the Amplicon Metagenomic Libraries. Math Biol Bioinf 2018;13:159-168. [DOI: 10.17537/2018.13.159] [Reference Citation Analysis]
|
| 488 |
Chen G, Qiu Y, Zhuang Q, Wang S, Wang T, Chen J, Wang K. Next-generation sequencing library preparation method for identification of RNA viruses on the Ion Torrent Sequencing Platform. Virus Genes 2018;54:536-42. [PMID: 29744712 DOI: 10.1007/s11262-018-1568-x] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 489 |
Hawkins JA, Jones SK, Finkelstein IJ, Press WH. Error-correcting DNA barcodes for high-throughput sequencing.. [DOI: 10.1101/315002] [Reference Citation Analysis]
|
| 490 |
Wei S, Weiss ZR, Williams Z. Rapid Multiplex Small DNA Sequencing on the MinION Nanopore Sequencing Platform. G3 (Bethesda) 2018;8:1649-57. [PMID: 29540443 DOI: 10.1534/g3.118.200087] [Cited by in Crossref: 17] [Cited by in F6Publishing: 18] [Article Influence: 3.4] [Reference Citation Analysis]
|
| 491 |
Di Resta C, Galbiati S, Carrera P, Ferrari M. Next-generation sequencing approach for the diagnosis of human diseases: open challenges and new opportunities. EJIFCC 2018;29:4-14. [PMID: 29765282] [Reference Citation Analysis]
|
| 492 |
Aguiar D, Cheng LF, Dumitrascu B, Mordelet F, Pai AA, Engelhardt BE. Bayesian nonparametric discovery of isoforms and individual specific quantification. Nat Commun 2018;9:1681. [PMID: 29703885 DOI: 10.1038/s41467-018-03402-w] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 493 |
Ballard ZS, Brown C, Ozcan A. Mobile Technologies for the Discovery, Analysis, and Engineering of the Global Microbiome. ACS Nano 2018;12:3065-82. [PMID: 29553706 DOI: 10.1021/acsnano.7b08660] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 494 |
Xue Z, Kable ME, Marco ML. Impact of DNA sequencing and analysis methods on 16S rRNA gene bacterial community analysis in dairy products.. [DOI: 10.1101/305078] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 495 |
Atabaki AH, Moazeni S, Pavanello F, Gevorgyan H, Notaros J, Alloatti L, Wade MT, Sun C, Kruger SA, Meng H, Al Qubaisi K, Wang I, Zhang B, Khilo A, Baiocco CV, Popović MA, Stojanović VM, Ram RJ. Integrating photonics with silicon nanoelectronics for the next generation of systems on a chip. Nature 2018;556:349-54. [DOI: 10.1038/s41586-018-0028-z] [Cited by in Crossref: 426] [Cited by in F6Publishing: 433] [Article Influence: 85.2] [Reference Citation Analysis]
|
| 496 |
Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, O'Grady J, Paracchini V, Rossen JWA, Ruppé E, Vamathevan J, Venturi V, Van den Eede G. The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies. F1000Res 2018;7:ISCB Comm J-459. [PMID: 30026930 DOI: 10.12688/f1000research.14509.2] [Cited by in Crossref: 18] [Cited by in F6Publishing: 22] [Article Influence: 3.6] [Reference Citation Analysis]
|
| 497 |
Angers-loustau A, Petrillo M, Bengtsson-palme J, Berendonk T, Blais B, Chan K, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec J, Naas T, O'grady J, Paracchini V, Rossen JW, Ruppé E, Vamathevan J, Venturi V, Van den Eede G. The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies. F1000Res 2018;7:459. [DOI: 10.12688/f1000research.14509.1] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.6] [Reference Citation Analysis]
|
| 498 |
Sun J, Qian S, Lu J, Liu Y, Lu F, Bie X, Lu Z. Knockout of rapC Improves the Bacillomycin D Yield Based on De Novo Genome Sequencing of Bacillus amyloliquefaciens fmbJ. J Agric Food Chem 2018;66:4422-30. [DOI: 10.1021/acs.jafc.8b00418] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 2.6] [Reference Citation Analysis]
|
| 499 |
Chen L, Yang L, Yao L, Kuang XY, Zuo WJ, Li S, Qiao F, Liu YR, Cao ZG, Zhou SL, Zhou XY, Yang WT, Shi JX, Huang W, Hu X, Shao ZM. Characterization of PIK3CA and PIK3R1 somatic mutations in Chinese breast cancer patients. Nat Commun 2018;9:1357. [PMID: 29636477 DOI: 10.1038/s41467-018-03867-9] [Cited by in Crossref: 63] [Cited by in F6Publishing: 67] [Article Influence: 12.6] [Reference Citation Analysis]
|
| 500 |
Ghosh M, Sharma N, Singh AK, Gera M, Pulicherla KK, Jeong DK. Transformation of animal genomics by next-generation sequencing technologies: a decade of challenges and their impact on genetic architecture. Crit Rev Biotechnol 2018;38:1157-75. [PMID: 29631431 DOI: 10.1080/07388551.2018.1451819] [Cited by in Crossref: 15] [Cited by in F6Publishing: 12] [Article Influence: 3.0] [Reference Citation Analysis]
|
| 501 |
Zhang Y, Chen Q, Ji J, Zhao L, Zhang L, Qiu J, He J. Complete Genome Sequence of Alcaligenes Faecalis Strain JQ135, a Bacterium Capable of Efficiently Degrading Nicotinic Acid. Curr Microbiol 2018;75:1551-4. [DOI: 10.1007/s00284-018-1486-0] [Cited by in Crossref: 10] [Cited by in F6Publishing: 11] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 502 |
Münz M, Mahamdallie S, Yost S, Rimmer A, Poyastro-Pearson E, Strydom A, Seal S, Ruark E, Rahman N. CoverView: a sequence quality evaluation tool for next generation sequencing data. Wellcome Open Res 2018;3:36. [PMID: 29881786 DOI: 10.12688/wellcomeopenres.14306.1] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 1.4] [Reference Citation Analysis]
|
| 503 |
Vendrell JA, Grand D, Rouquette I, Costes V, Icher S, Selves J, Larrieux M, Barbe A, Brousset P, Solassol J. High-throughput detection of clinically targetable alterations using next-generation sequencing. Oncotarget 2017;8:40345-58. [PMID: 28404952 DOI: 10.18632/oncotarget.15875] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 504 |
Borrell YJ, Miralles L, Mártinez-marqués A, Semeraro A, Arias A, Carleos CE, García-vázquez E. Metabarcoding and post-sampling strategies to discover non-indigenous species: A case study in the estuaries of the central south Bay of Biscay. Journal for Nature Conservation 2018;42:67-74. [DOI: 10.1016/j.jnc.2017.07.002] [Cited by in Crossref: 13] [Cited by in F6Publishing: 8] [Article Influence: 2.6] [Reference Citation Analysis]
|
| 505 |
Ribani A, Schiavo G, Utzeri VJ, Bertolini F, Geraci C, Bovo S, Fontanesi L. Application of next generation semiconductor based sequencing for species identification in dairy products. Food Chemistry 2018;246:90-8. [DOI: 10.1016/j.foodchem.2017.11.006] [Cited by in Crossref: 29] [Cited by in F6Publishing: 25] [Article Influence: 5.8] [Reference Citation Analysis]
|
| 506 |
Pillai S, Gopalan V, Lam AK. DNA Genome Sequencing in Esophageal Adenocarcinoma. Methods Mol Biol 2018;1756:231-46. [PMID: 29600374 DOI: 10.1007/978-1-4939-7734-5_20] [Cited by in Crossref: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 507 |
Carlson R. Competition and the Future of Reading and Writing DNA. Synthetic Biology 2018. [DOI: 10.1002/9783527688104.ch1] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 508 |
Bachmann JA, Tedder A, Laenen B, Steige KA, Slotte T. Targeted Long-Read Sequencing of a Locus Under Long-Term Balancing Selection in Capsella. G3 (Bethesda) 2018;8:1327-33. [PMID: 29476024 DOI: 10.1534/g3.117.300467] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.6] [Reference Citation Analysis]
|
| 509 |
Rew V, Mook P, Trienekens S, Baker KS, Dallman TJ, Jenkins C, Crook PD, Thomson NR. Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel. Microb Genom 2018;4. [PMID: 29583113 DOI: 10.1099/mgen.0.000170] [Cited by in Crossref: 9] [Cited by in F6Publishing: 10] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 510 |
Hebert PDN, Braukmann TWA, Prosser SWJ, Ratnasingham S, deWaard JR, Ivanova NV, Janzen DH, Hallwachs W, Naik S, Sones JE, Zakharov EV. A Sequel to Sanger: amplicon sequencing that scales. BMC Genomics 2018;19:219. [PMID: 29580219 DOI: 10.1186/s12864-018-4611-3] [Cited by in Crossref: 131] [Cited by in F6Publishing: 134] [Article Influence: 26.2] [Reference Citation Analysis]
|
| 511 |
Panek M, Čipčić Paljetak H, Barešić A, Perić M, Matijašić M, Lojkić I, Vranešić Bender D, Krznarić Ž, Verbanac D. Methodology challenges in studying human gut microbiota - effects of collection, storage, DNA extraction and next generation sequencing technologies. Sci Rep 2018;8:5143. [PMID: 29572539 DOI: 10.1038/s41598-018-23296-4] [Cited by in Crossref: 94] [Cited by in F6Publishing: 95] [Article Influence: 18.8] [Reference Citation Analysis]
|
| 512 |
Cetin AE, Iyidogan P, Hayashi Y, Wallen M, Vijayan K, Tu E, Nguyen M, Oliphant A. Plasmonic Sensor Could Enable Label-Free DNA Sequencing. ACS Sens 2018;3:561-8. [PMID: 29488377 DOI: 10.1021/acssensors.7b00957] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 2.6] [Reference Citation Analysis]
|
| 513 |
Hoang NV, Furtado A, Thirugnanasambandam PP, Botha FC, Henry RJ. De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts. Heliyon 2018;4:e00583. [PMID: 29862346 DOI: 10.1016/j.heliyon.2018.e00583] [Cited by in Crossref: 10] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 514 |
Walsh AM, Crispie F, O'Sullivan O, Finnegan L, Claesson MJ, Cotter PD. Species classifier choice is a key consideration when analysing low-complexity food microbiome data. Microbiome 2018;6:50. [PMID: 29554948 DOI: 10.1186/s40168-018-0437-0] [Cited by in Crossref: 47] [Cited by in F6Publishing: 49] [Article Influence: 9.4] [Reference Citation Analysis]
|
| 515 |
Perišić O. Heterodimer Binding Scaffolds Recognition via the Analysis of Kinetically Hot Residues. Pharmaceuticals (Basel) 2018;11:E29. [PMID: 29547506 DOI: 10.3390/ph11010029] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 0.6] [Reference Citation Analysis]
|
| 516 |
Shin S, Kim Y, Chul Oh S, Yu N, Lee ST, Rak Choi J, Lee KA. Validation and optimization of the Ion Torrent S5 XL sequencer and Oncomine workflow for BRCA1 and BRCA2 genetic testing. Oncotarget. 2017;8:34858-34866. [PMID: 28422718 DOI: 10.18632/oncotarget.16799] [Cited by in Crossref: 28] [Cited by in F6Publishing: 28] [Article Influence: 5.6] [Reference Citation Analysis]
|
| 517 |
Himaya SWA, Lewis RJ. Venomics-Accelerated Cone Snail Venom Peptide Discovery. Int J Mol Sci 2018;19:E788. [PMID: 29522462 DOI: 10.3390/ijms19030788] [Cited by in Crossref: 22] [Cited by in F6Publishing: 24] [Article Influence: 4.4] [Reference Citation Analysis]
|
| 518 |
Li WV, Zhao A, Zhang S, Li JJ. MSIQ: JOINT MODELING OF MULTIPLE RNA-SEQ SAMPLES FOR ACCURATE ISOFORM QUANTIFICATION. Ann Appl Stat 2018;12:510-39. [PMID: 29731954 DOI: 10.1214/17-AOAS1100] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 0.6] [Reference Citation Analysis]
|
| 519 |
Huang J, Liang X, Xuan Y, Geng C, Li Y, Lu H, Qu S, Mei X, Chen H, Yu T, Sun N, Rao J, Wang J, Zhang W, Chen Y, Liao S, Jiang H, Liu X, Yang Z, Mu F, Gao S. A reference human genome dataset of the BGISEQ-500 sequencer. Gigascience 2017;6:1-9. [PMID: 28379488 DOI: 10.1093/gigascience/gix024] [Cited by in Crossref: 153] [Cited by in F6Publishing: 158] [Article Influence: 30.6] [Reference Citation Analysis]
|
| 520 |
Böhme U, Otto TD, Cotton JA, Steinbiss S, Sanders M, Oyola SO, Nicot A, Gandon S, Patra KP, Herd C, Bushell E, Modrzynska KK, Billker O, Vinetz JM, Rivero A, Newbold CI, Berriman M. Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals. Genome Res 2018;28:547-60. [PMID: 29500236 DOI: 10.1101/gr.218123.116] [Cited by in Crossref: 61] [Cited by in F6Publishing: 67] [Article Influence: 12.2] [Reference Citation Analysis]
|
| 521 |
Wei S, Weiss ZR, Gaur P, Forman E, Williams Z. Rapid preimplantation genetic screening (PGS) using a handheld, nanopore-based, DNA sequencer.. [DOI: 10.1101/274563] [Reference Citation Analysis]
|
| 522 |
Sullivan-pyke C, Dokras A. Preimplantation Genetic Screening and Preimplantation Genetic Diagnosis. Obstetrics and Gynecology Clinics of North America 2018;45:113-25. [DOI: 10.1016/j.ogc.2017.10.009] [Cited by in Crossref: 34] [Cited by in F6Publishing: 36] [Article Influence: 6.8] [Reference Citation Analysis]
|
| 523 |
Ogunade I, Jiang Y, Pech Cervantes A, Kim D, Oliveira A, Vyas D, Weinberg Z, Jeong K, Adesogan A. Bacterial diversity and composition of alfalfa silage as analyzed by Illumina MiSeq sequencing: Effects of Escherichia coli O157:H7 and silage additives. Journal of Dairy Science 2018;101:2048-59. [DOI: 10.3168/jds.2017-12876] [Cited by in Crossref: 121] [Cited by in F6Publishing: 131] [Article Influence: 24.2] [Reference Citation Analysis]
|
| 524 |
Varela-Stokes AS, Park SH, Stokes JV, Gavron NA, Lee SI, Moraru GM, Ricke SC. Tick microbial communities within enriched extracts of Amblyomma maculatum. Ticks Tick Borne Dis 2018;9:798-805. [PMID: 29530467 DOI: 10.1016/j.ttbdis.2018.02.022] [Cited by in Crossref: 16] [Cited by in F6Publishing: 16] [Article Influence: 3.2] [Reference Citation Analysis]
|
| 525 |
Lim M, Kim CJ, Sunkara V, Kim MH, Cho YK. Liquid Biopsy in Lung Cancer: Clinical Applications of Circulating Biomarkers (CTCs and ctDNA). Micromachines (Basel) 2018;9:E100. [PMID: 30424034 DOI: 10.3390/mi9030100] [Cited by in Crossref: 45] [Cited by in F6Publishing: 57] [Article Influence: 9.0] [Reference Citation Analysis]
|
| 526 |
Phadke S, Salvador AF, Alves JI, Bretschger O, Alves MM, Pereira MA. Harnessing the Power of PCR Molecular Fingerprinting Methods and Next Generation Sequencing for Understanding Structure and Function in Microbial Communities. Methods Mol Biol 2017;1620:225-48. [PMID: 28540712 DOI: 10.1007/978-1-4939-7060-5_16] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 527 |
Holland MM, Makova KD, McElhoe JA. Deep-Coverage MPS Analysis of Heteroplasmic Variants within the mtGenome Allows for Frequent Differentiation of Maternal Relatives. Genes (Basel) 2018;9:E124. [PMID: 29495418 DOI: 10.3390/genes9030124] [Cited by in Crossref: 21] [Cited by in F6Publishing: 22] [Article Influence: 4.2] [Reference Citation Analysis]
|
| 528 |
Bennett CW, Berchem G, Kim YJ, El-Khoury V. Cell-free DNA and next-generation sequencing in the service of personalized medicine for lung cancer. Oncotarget 2016;7:71013-35. [PMID: 27589834 DOI: 10.18632/oncotarget.11717] [Cited by in Crossref: 52] [Cited by in F6Publishing: 58] [Article Influence: 10.4] [Reference Citation Analysis]
|
| 529 |
Zhang R, Ding J, Han Y, Yi L, Xie J, Yang X, Fan G, Wang G, Hao M, Zhang D, Zhang K, Lin G, Li J. The reliable assurance of detecting somatic mutations in cancer-related genes by next-generation sequencing: the results of external quality assessment in China. Oncotarget 2016;7:58500-15. [PMID: 27542269 DOI: 10.18632/oncotarget.11306] [Cited by in Crossref: 8] [Cited by in F6Publishing: 9] [Article Influence: 1.6] [Reference Citation Analysis]
|
| 530 |
Clark DR, Ferguson RMW, Harris DN, Matthews Nicholass KJ, Prentice HJ, Randall KC, Randell L, Warren SL, Dumbrell AJ. Streams of data from drops of water: 21st century molecular microbial ecology. WIREs Water 2018;5. [DOI: 10.1002/wat2.1280] [Cited by in Crossref: 19] [Cited by in F6Publishing: 20] [Article Influence: 3.8] [Reference Citation Analysis]
|
| 531 |
Haig SJ, Kotlarz N, LiPuma JJ, Raskin L. A High-Throughput Approach for Identification of Nontuberculous Mycobacteria in Drinking Water Reveals Relationship between Water Age and Mycobacterium avium. mBio 2018;9:e02354-17. [PMID: 29440575 DOI: 10.1128/mBio.02354-17] [Cited by in Crossref: 36] [Cited by in F6Publishing: 40] [Article Influence: 7.2] [Reference Citation Analysis]
|
| 532 |
Debeljak M, Mocci E, Morrison MC, Pallavajjalla A, Beierl K, Amiel M, Noë M, Wood LD, Lin MT, Gocke CD, Klein AP, Fuchs EJ, Jones RJ, Eshleman JR. Haplotype Counting for Sensitive Chimerism Testing: Potential for Early Leukemia Relapse Detection. J Mol Diagn 2017;19:427-36. [PMID: 28433078 DOI: 10.1016/j.jmoldx.2017.01.005] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 533 |
Suryavanshi M, Kumar D, Panigrahi MK, Chowdhary M, Mehta A. Detection of false positive mutations in BRCA gene by next generation sequencing. Fam Cancer 2017;16:311-7. [PMID: 27848044 DOI: 10.1007/s10689-016-9955-8] [Cited by in Crossref: 12] [Cited by in F6Publishing: 10] [Article Influence: 2.4] [Reference Citation Analysis]
|
| 534 |
Raju MN, Scalvenzi L. Petroleum Degradation: Promising Biotechnological Tools for Bioremediation. Recent Insights in Petroleum Science and Engineering 2018. [DOI: 10.5772/intechopen.70109] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 535 |
He Q, Cao C, Hui W, Yu J, Zhang H, Zhang W. Genomic resequencing combined with quantitative proteomic analyses elucidate the survival mechanisms of Lactobacillus plantarum P-8 in a long-term glucose-limited experiment. J Proteomics 2018;176:37-45. [PMID: 29414317 DOI: 10.1016/j.jprot.2018.01.013] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 536 |
Campisciano G, Zanotta N, Licastro D, De Seta F, Comar M. In vivo microbiome and associated immune markers: New insights into the pathogenesis of vaginal dysbiosis. Sci Rep 2018;8:2307. [PMID: 29396486 DOI: 10.1038/s41598-018-20649-x] [Cited by in Crossref: 34] [Cited by in F6Publishing: 35] [Article Influence: 6.8] [Reference Citation Analysis]
|
| 537 |
Page AJ, Keane JA. Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus.. [DOI: 10.1101/259150] [Reference Citation Analysis]
|
| 538 |
Gaby JC, Rishishwar L, Valderrama-Aguirre LC, Green SJ, Valderrama-Aguirre A, Jordan IK, Kostka JE. Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline. Appl Environ Microbiol 2018;84:e01512-17. [PMID: 29180374 DOI: 10.1128/AEM.01512-17] [Cited by in Crossref: 50] [Cited by in F6Publishing: 54] [Article Influence: 10.0] [Reference Citation Analysis]
|
| 539 |
Maxwell P, Hynes SO, Fuchs M, Craig S, McGready C, McLean F, McQuaid S, James J, Salto-Tellez M. Practical guide for the comparison of two next-generation sequencing systems for solid tumour analysis in a universal healthcare system. J Clin Pathol 2019;72:225-31. [PMID: 29386326 DOI: 10.1136/jclinpath-2017-204917] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 0.6] [Reference Citation Analysis]
|
| 540 |
Wei S, Weiss ZR, Williams Z. Rapid multiplex small DNA sequencing on the MinION nanopore sequencing platform.. [DOI: 10.1101/257196] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 541 |
Wai KT, Barash M, Gunn P. Performance of the Early Access AmpliSeq™ Mitochondrial Panel with degraded DNA samples using the Ion Torrent™ platform. Electrophoresis 2018;39:2776-84. [PMID: 29330875 DOI: 10.1002/elps.201700371] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 2.2] [Reference Citation Analysis]
|
| 542 |
Gong J, Pan K, Fakih M, Pal S, Salgia R. Value-based genomics. Oncotarget 2018;9:15792-815. [PMID: 29644010 DOI: 10.18632/oncotarget.24353] [Cited by in Crossref: 32] [Cited by in F6Publishing: 33] [Article Influence: 6.4] [Reference Citation Analysis]
|
| 543 |
Maestre JP, Jennings W, Wylie D, Horner SD, Siegel J, Kinney KA. Filter forensics: microbiota recovery from residential HVAC filters. Microbiome 2018;6:22. [PMID: 29382378 DOI: 10.1186/s40168-018-0407-6] [Cited by in Crossref: 24] [Cited by in F6Publishing: 25] [Article Influence: 4.8] [Reference Citation Analysis]
|
| 544 |
Shin SY, Lee ST, Kim HJ, Cho EH, Kim JW, Park S, Jung CW, Kim SH. Mutation profiling of 19 candidate genes in acute myeloid leukemia suggests significance of DNMT3A mutations. Oncotarget 2016;7:54825-37. [PMID: 27359055 DOI: 10.18632/oncotarget.10240] [Cited by in Crossref: 17] [Cited by in F6Publishing: 18] [Article Influence: 3.4] [Reference Citation Analysis]
|
| 545 |
Cooper C, Keatley S, Northover A, Gofton AW, Brigg F, Lymbery AJ, Pallant L, Clode PL, Thompson RCA. Next generation sequencing reveals widespread trypanosome diversity and polyparasitism in marsupials from Western Australia. Int J Parasitol Parasites Wildl 2018;7:58-67. [PMID: 29988778 DOI: 10.1016/j.ijppaw.2018.01.005] [Cited by in Crossref: 17] [Cited by in F6Publishing: 21] [Article Influence: 3.4] [Reference Citation Analysis]
|
| 546 |
Kioroglou D, Lleixá J, Mas A, Portillo M. Massive Sequencing: A New Tool for the Control of Alcoholic Fermentation in Wine? Fermentation 2018;4:7. [DOI: 10.3390/fermentation4010007] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 547 |
Barris DM, Weiner SB, Dubin RA, Fremed M, Zhang X, Piperdi S, Zhang W, Maqbool S, Gill J, Roth M, Hoang B, Geller D, Gorlick R, Weiser DA. Detection of circulating tumor DNA in patients with osteosarcoma. Oncotarget 2018;9:12695-704. [PMID: 29560102 DOI: 10.18632/oncotarget.24268] [Cited by in Crossref: 25] [Cited by in F6Publishing: 27] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 548 |
Hussing C, Kampmann ML, Mogensen HS, Børsting C, Morling N. Quantification of massively parallel sequencing libraries - a comparative study of eight methods. Sci Rep 2018;8:1110. [PMID: 29348673 DOI: 10.1038/s41598-018-19574-w] [Cited by in Crossref: 20] [Cited by in F6Publishing: 22] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 549 |
Sentmanat MF, Peters ST, Florian CP, Connelly JP, Pruett-Miller SM. A Survey of Validation Strategies for CRISPR-Cas9 Editing. Sci Rep 2018;8:888. [PMID: 29343825 DOI: 10.1038/s41598-018-19441-8] [Cited by in Crossref: 174] [Cited by in F6Publishing: 179] [Article Influence: 34.8] [Reference Citation Analysis]
|
| 550 |
Urbaniak C, Sielaff AC, Frey KG, Allen JE, Singh N, Jaing C, Wheeler K, Venkateswaran K. Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces. Sci Rep 2018;8:814. [PMID: 29339831 DOI: 10.1038/s41598-017-18506-4] [Cited by in Crossref: 55] [Cited by in F6Publishing: 57] [Article Influence: 11.0] [Reference Citation Analysis]
|
| 551 |
Jiao Y, Li R, Wu C, Ding Y, Liu Y, Jia D, Wang L, Xu X, Zhu J, Zheng M, Jia J. High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq). BMC Genomics 2018;19:50. [PMID: 29334893 DOI: 10.1186/s12864-018-4431-5] [Cited by in Crossref: 6] [Cited by in F6Publishing: 7] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 552 |
Akbar M, Ahmad A, Usup G, Bunawan H. RNA-Seq as an Emerging Tool for Marine Dinoflagellate Transcriptome Analysis: Process and Challenges. Processes 2018;6:5. [DOI: 10.3390/pr6010005] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.6] [Reference Citation Analysis]
|
| 553 |
Stasik S, Schuster C, Ortlepp C, Platzbecker U, Bornhäuser M, Schetelig J, Ehninger G, Folprecht G, Thiede C. An optimized targeted Next-Generation Sequencing approach for sensitive detection of single nucleotide variants. Biomol Detect Quantif 2018;15:6-12. [PMID: 29349042 DOI: 10.1016/j.bdq.2017.12.001] [Cited by in Crossref: 23] [Cited by in F6Publishing: 26] [Article Influence: 4.6] [Reference Citation Analysis]
|
| 554 |
Rekdal SL, Anmarkrud JA, Johnsen A, Lifjeld JT. Genotyping strategy matters when analyzing hypervariable major histocompatibility complex-Experience from a passerine bird. Ecol Evol 2018;8:1680-92. [PMID: 29435243 DOI: 10.1002/ece3.3757] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 555 |
Ricke SC, Hacker JC, Yearkey KL, Shi Z, Park SH, Rainwater CE. Unraveling Food Production Microbiomes. Food and Feed Safety Systems and Analysis 2018. [DOI: 10.1016/b978-0-12-811835-1.00019-1] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 556 |
Wei X, Liu N, Wang XW, Ji J. Genomics Studies in Hepatocellular Carcinoma via Next-Generation Sequencing. Molecular Pathology Library 2018. [DOI: 10.1007/978-3-319-68082-8_4] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 557 |
de Sá PH, Guimarães LC, das Graças DA, de Oliveira Veras AA, Barh D, Azevedo V, da Costa da Silva AL, Ramos RT. Next-Generation Sequencing and Data Analysis. Omics Technologies and Bio-Engineering 2018. [DOI: 10.1016/b978-0-12-804659-3.00011-7] [Cited by in Crossref: 3] [Article Influence: 0.6] [Reference Citation Analysis]
|
| 558 |
Benbow ME, Pechal JL, Tomberlin JK, Jordan HR. Interkingdom Community Interactions in Disease Ecology. Advances in Environmental Microbiology 2018. [DOI: 10.1007/978-3-319-92373-4_1] [Cited by in Crossref: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 559 |
Davot T, Chateau A, Giroudeau R, Weller M. On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigs. Comparative Genomics 2018. [DOI: 10.1007/978-3-030-00834-5_5] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 560 |
Bramhachari PV, Pinjari AB, Kariali E. Genomics of Actinobacteria With a Focus on Natural Product Biosynthetic Genes. New and Future Developments in Microbial Biotechnology and Bioengineering 2018. [DOI: 10.1016/b978-0-444-63994-3.00022-9] [Reference Citation Analysis]
|
| 561 |
Hou D, Qu J, Song Y. Host Immune Repertoire and Infection. Advanced Techniques in Diagnostic Microbiology 2018. [DOI: 10.1007/978-3-319-95111-9_26] [Reference Citation Analysis]
|
| 562 |
Parreira JR, de Sousa Araújo S. Studying the Animal Transcriptome: State of the Art and Challenges in the Context of Animal and Veterinary Sciences. Proteomics in Domestic Animals: from Farm to Systems Biology 2018. [DOI: 10.1007/978-3-319-69682-9_20] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 563 |
Saldivar JC, Davis ML, Johnson MG, Ricke SC. Listeria monocytogenes Adaptation and Growth at Low Temperatures. Food and Feed Safety Systems and Analysis 2018. [DOI: 10.1016/b978-0-12-811835-1.00013-0] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 564 |
Assisi C, Etter AJ, Oliver HF. Use and Impacts of Whole Genome Sequencing in Retail Food Safety. Food and Feed Safety Systems and Analysis 2018. [DOI: 10.1016/b978-0-12-811835-1.00017-8] [Reference Citation Analysis]
|
| 565 |
Saitou N. Genome and Transcriptome Sequencing. Introduction to Evolutionary Genomics 2018. [DOI: 10.1007/978-3-319-92642-1_13] [Reference Citation Analysis]
|
| 566 |
Thompson DR, Rainwater CE, Di J, Ricke SC. Student Cross-Training Opportunities for Combining Food, Transportation, and Critical Infrastructure Cybersecurity Into an Academic Food Systems Education Program. Food and Feed Safety Systems and Analysis 2018. [DOI: 10.1016/b978-0-12-811835-1.00020-8] [Reference Citation Analysis]
|
| 567 |
Ponzellini P, Zambrana-puyalto X, Maccaferri N, Lanzanò L, De Angelis F, Garoli D. Plasmonic zero mode waveguide for highly confined and enhanced fluorescence emission. Nanoscale 2018;10:17362-9. [DOI: 10.1039/c8nr04103b] [Cited by in Crossref: 29] [Cited by in F6Publishing: 29] [Article Influence: 5.8] [Reference Citation Analysis]
|
| 568 |
Villarreal-morales SL, Montañez-saenz JC, Aguilar-gonzález CN, Rodriguez-herrera R. Metagenomics of Traditional Beverages. Advances in Biotechnology for Food Industry 2018. [DOI: 10.1016/b978-0-12-811443-8.00011-6] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 569 |
Lebrasseur O, Ryan H, Abbona C. Bridging Archaeology and Genetics. Environmental Archaeology 2018. [DOI: 10.1007/978-3-319-75082-8_6] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 570 |
Altukhova O, Borovikov P, Balashov I, Trofimov D, Garmash A, Komarov T, Lebedev G. Method using parallel computations and clustering in the problem of genotyping HLA. Procedia Computer Science 2018;145:30-36. [DOI: 10.1016/j.procs.2018.11.005] [Reference Citation Analysis]
|
| 571 |
Hogg ID, Banks JC, Woods SM. Biodiversity Genomics: Monitoring Restoration Efforts Using DNA Barcoding and Environmental DNA. Lake Restoration Handbook 2018. [DOI: 10.1007/978-3-319-93043-5_12] [Reference Citation Analysis]
|
| 572 |
Nunez JCB, Elyanow RG, Ferranti DA, Rand DM. Population Genomics and Biogeography of the Northern Acorn Barnacle (Semibalanus balanoides) Using Pooled Sequencing Approaches. Population Genomics 2018. [DOI: 10.1007/13836_2018_58] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 573 |
Vilgis S, Deigner H. Sequencing in Precision Medicine. Precision Medicine 2018. [DOI: 10.1016/b978-0-12-805364-5.00005-6] [Cited by in Crossref: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 574 |
Mello CV, Lovell PV, Wirthlin M. Discovery of Novel Genes and Other Lineage-Specific Features Through Comparative Genomics. Molecular-Genetic and Statistical Techniques for Behavioral and Neural Research 2018. [DOI: 10.1016/b978-0-12-804078-2.00010-6] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 575 |
Długosz M, Deorowicz S, Kokot M. Improvements in DNA Reads Correction. Advances in Intelligent Systems and Computing 2018. [DOI: 10.1007/978-3-319-67792-7_12] [Reference Citation Analysis]
|
| 576 |
Parras-Moltó M, López-Bueno A. Methods for Enrichment and Sequencing of Oral Viral Assemblages: Saliva, Oral Mucosa, and Dental Plaque Viromes. Methods Mol Biol 2018;1838:143-61. [PMID: 30128995 DOI: 10.1007/978-1-4939-8682-8_11] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 577 |
Russell DA. Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes. Methods Mol Biol 2018;1681:109-25. [PMID: 29134591 DOI: 10.1007/978-1-4939-7343-9_9] [Cited by in Crossref: 147] [Cited by in F6Publishing: 145] [Article Influence: 29.4] [Reference Citation Analysis]
|
| 578 |
Tabary D, Davot T, Weller M, Chateau A, Giroudeau R. New Results About the Linearization of Scaffolds Sharing Repeated Contigs. Combinatorial Optimization and Applications 2018. [DOI: 10.1007/978-3-030-04651-4_7] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 579 |
Xu Y, Zhi Y, Wu Q, Du R, Xu Y. Zygosaccharomyces bailii Is a Potential Producer of Various Flavor Compounds in Chinese Maotai-Flavor Liquor Fermentation. Front Microbiol 2017;8:2609. [PMID: 29312273 DOI: 10.3389/fmicb.2017.02609] [Cited by in Crossref: 30] [Cited by in F6Publishing: 30] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 580 |
Li F, Neves ALA, Ghoshal B, Guan LL. Symposium review: Mining metagenomic and metatranscriptomic data for clues about microbial metabolic functions in ruminants. J Dairy Sci 2018;101:5605-18. [PMID: 29274958 DOI: 10.3168/jds.2017-13356] [Cited by in Crossref: 17] [Cited by in F6Publishing: 17] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 581 |
Turner TR, Hayhurst JD, Hayward DR, Bultitude WP, Barker DJ, Robinson J, Madrigal JA, Mayor NP, Marsh SGE. Single molecule real-time DNA sequencing of HLA genes at ultra-high resolution from 126 International HLA and Immunogenetics Workshop cell lines. HLA 2018;91:88-101. [PMID: 29171935 DOI: 10.1111/tan.13184] [Cited by in Crossref: 38] [Cited by in F6Publishing: 38] [Article Influence: 6.3] [Reference Citation Analysis]
|
| 582 |
Yannakou CK, Jones K, McBean M, Thompson ER, Ryland GL, Doig K, Markham J, Westerman D, Blombery P. ASXL1 c.1934dup;p.Gly646Trpfs*12-a true somatic alteration requiring a new approach. Blood Cancer J 2017;7:656. [PMID: 29242575 DOI: 10.1038/s41408-017-0025-8] [Cited by in Crossref: 12] [Cited by in F6Publishing: 13] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 583 |
Soliman T, Reimer JD, Yang SY, Villar-Briones A, Roy MC, Jenke-Kodama H. Diversity of Microbial Communities and Quantitative Chemodiversity in Layers of Marine Sediment Cores from a Causeway (Kaichu-Doro) in Okinawa Island, Japan. Front Microbiol 2017;8:2451. [PMID: 29321767 DOI: 10.3389/fmicb.2017.02451] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 584 |
Kovaltsuk A, Krawczyk K, Galson JD, Kelly DF, Deane CM, Trück J. How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data. Front Immunol 2017;8:1753. [PMID: 29276518 DOI: 10.3389/fimmu.2017.01753] [Cited by in Crossref: 31] [Cited by in F6Publishing: 32] [Article Influence: 5.2] [Reference Citation Analysis]
|
| 585 |
Del Vecchio F, Mastroiaco V, Di Marco A, Compagnoni C, Capece D, Zazzeroni F, Capalbo C, Alesse E, Tessitore A. Next-generation sequencing: recent applications to the analysis of colorectal cancer. J Transl Med. 2017;15:246. [PMID: 29221448 DOI: 10.1186/s12967-017-1353-y] [Cited by in Crossref: 48] [Cited by in F6Publishing: 50] [Article Influence: 8.0] [Reference Citation Analysis]
|
| 586 |
Moejes F, Succurro A, Popa O, Maguire J, Ebenhöh O. Dynamics of the Bacterial Community Associated with Phaeodactylum tricornutum Cultures. Processes 2017;5:77. [DOI: 10.3390/pr5040077] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 587 |
Kumar K, Srinivasan P, Nold MJ, Moch JK, Reiter K, Sturdevant D, Otto TD, Squires RB, Herrera R, Nagarajan V, Rayner JC, Porcella SF, Geromanos SJ, Haynes JD, Narum DL. Profiling invasive Plasmodium falciparum merozoites using an integrated omics approach. Sci Rep 2017;7:17146. [PMID: 29215067 DOI: 10.1038/s41598-017-17505-9] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 588 |
Mahomed S, Naidoo K, Dookie N, Padayatchi N. Whole genome sequencing for the management of drug-resistant TB in low income high TB burden settings: Challenges and implications. Tuberculosis 2017;107:137-43. [DOI: 10.1016/j.tube.2017.09.005] [Cited by in Crossref: 12] [Cited by in F6Publishing: 9] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 589 |
Kim J, An JU, Kim W, Lee S, Cho S. Differences in the gut microbiota of dogs (Canis lupus familiaris) fed a natural diet or a commercial feed revealed by the Illumina MiSeq platform. Gut Pathog 2017;9:68. [PMID: 29201150 DOI: 10.1186/s13099-017-0218-5] [Cited by in Crossref: 58] [Cited by in F6Publishing: 59] [Article Influence: 9.7] [Reference Citation Analysis]
|
| 590 |
Bürckert J, Faison WJ, Dubois ARSX, Sinner R, Hunewald O, Wienecke-baldacchino A, Brieger A, Muller CP. High-throughput sequencing of murine immunoglobulin heavy chain transcripts using single side unique molecular identifiers on an Ion Torrent PGM.. [DOI: 10.1101/219568] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 591 |
Yoon TH, Kang HE, Lee SR, Lee JB, Baeck GW, Park H, Kim HW. Metabarcoding analysis of the stomach contents of the Antarctic Toothfish (Dissostichus mawsoni) collected in the Antarctic Ocean. PeerJ 2017;5:e3977. [PMID: 29134141 DOI: 10.7717/peerj.3977] [Cited by in Crossref: 24] [Cited by in F6Publishing: 24] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 592 |
Choi M, Genereux DP, Goodson J, Al-Azzawi H, Allain SQ, Simon N, Palasek S, Ware CB, Cavanaugh C, Miller DG, Johnson WC, Sinclair KD, Stöger R, Laird CD. Epigenetic memory via concordant DNA methylation is inversely correlated to developmental potential of mammalian cells. PLoS Genet 2017;13:e1007060. [PMID: 29107996 DOI: 10.1371/journal.pgen.1007060] [Cited by in Crossref: 12] [Cited by in F6Publishing: 13] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 593 |
Lagarde J, Uszczynska-Ratajczak B, Carbonell S, Pérez-Lluch S, Abad A, Davis C, Gingeras TR, Frankish A, Harrow J, Guigo R, Johnson R. High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing. Nat Genet 2017;49:1731-40. [PMID: 29106417 DOI: 10.1038/ng.3988] [Cited by in Crossref: 158] [Cited by in F6Publishing: 159] [Article Influence: 26.3] [Reference Citation Analysis]
|
| 594 |
Quainoo S, Coolen JPM, van Hijum SAFT, Huynen MA, Melchers WJG, van Schaik W, Wertheim HFL. Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis. Clin Microbiol Rev 2017;30:1015-63. [PMID: 28855266 DOI: 10.1128/CMR.00016-17] [Cited by in Crossref: 212] [Cited by in F6Publishing: 222] [Article Influence: 35.3] [Reference Citation Analysis]
|
| 595 |
Babakoohi S, Lapidus RG, Faramand R, Sausville EA, Emadi A. Comparative Analysis of Methods for Detecting Isocitrate Dehydrogenase 1 and 2 Mutations and Their Metabolic Consequence, 2-Hydroxyglutarate, in Different Neoplasms. Appl Immunohistochem Mol Morphol 2017;25:334-7. [PMID: 26945443 DOI: 10.1097/PAI.0000000000000342] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 596 |
Jabeen S, Yong YH, Abdullah FJF, Zakaria Z, Mat Isa N, Tan YC, Yee WY, Omar AR. Complete Genome Sequence of Pasteurella multocida Serotype A Strain PMTB2.1 Isolated from Buffaloes That Died of Septicemia in Malaysia. Genome Announc 2017;5:e01190-17. [PMID: 29097462 DOI: 10.1128/genomeA.01190-17] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 597 |
Vasselon V, Rimet F, Tapolczai K, Bouchez A. Assessing ecological status with diatoms DNA metabarcoding: Scaling-up on a WFD monitoring network (Mayotte island, France). Ecological Indicators 2017;82:1-12. [DOI: 10.1016/j.ecolind.2017.06.024] [Cited by in Crossref: 107] [Cited by in F6Publishing: 63] [Article Influence: 17.8] [Reference Citation Analysis]
|
| 598 |
Barrett AN, Xiong L, Tan TZ, Advani HV, Hua R, Laureano-Asibal C, Soong R, Biswas A, Nagarajan N, Choolani M. Measurement of fetal fraction in cell-free DNA from maternal plasma using a panel of insertion/deletion polymorphisms. PLoS One 2017;12:e0186771. [PMID: 29084245 DOI: 10.1371/journal.pone.0186771] [Cited by in Crossref: 19] [Cited by in F6Publishing: 19] [Article Influence: 3.2] [Reference Citation Analysis]
|
| 599 |
Yu J, Antić Ž, van Reijmersdal SV, Hoischen A, Sonneveld E, Waanders E, Kuiper RP. Accurate detection of low-level mosaic mutations in pediatric acute lymphoblastic leukemia using single molecule tagging and deep-sequencing. Leuk Lymphoma 2018;59:1690-9. [PMID: 29058513 DOI: 10.1080/10428194.2017.1390232] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 600 |
Besser J, Carleton HA, Gerner-Smidt P, Lindsey RL, Trees E. Next-generation sequencing technologies and their application to the study and control of bacterial infections. Clin Microbiol Infect 2018;24:335-41. [PMID: 29074157 DOI: 10.1016/j.cmi.2017.10.013] [Cited by in Crossref: 249] [Cited by in F6Publishing: 259] [Article Influence: 41.5] [Reference Citation Analysis]
|
| 601 |
Starostik P. Clinical mutation assay of tumors: new developments. Anticancer Drugs 2017;28:1-10. [PMID: 27575332 DOI: 10.1097/CAD.0000000000000427] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 602 |
Helfer BS, Fremont-smith P, Ricke DO. The Genetic Chain Rule for Probabilistic Kinship Estimation.. [DOI: 10.1101/202879] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 603 |
Stevanato P, Broccanello C, Pajola L, Biscarini F, Richards C, Panella L, Hassani M, Formentin E, Chiodi C, Concheri G, Heidari B. Targeted Next-Generation Sequencing Identification of Mutations in Disease Resistance Gene Analogs (RGAs) in Wild and Cultivated Beets. Genes (Basel) 2017;8:E264. [PMID: 29019931 DOI: 10.3390/genes8100264] [Cited by in Crossref: 8] [Cited by in F6Publishing: 7] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 604 |
Redin D, Borgström E, He M, Aghelpasand H, Käller M, Ahmadian A. Droplet Barcode Sequencing for targeted linked-read haplotyping of single DNA molecules. Nucleic Acids Res 2017;45:e125. [PMID: 28525570 DOI: 10.1093/nar/gkx436] [Cited by in Crossref: 7] [Cited by in F6Publishing: 9] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 605 |
Rivera SF, Vasselon V, Jacquet S, Bouchez A, Ariztegui D, Rimet F. Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment. Hydrobiologia 2018;807:37-51. [DOI: 10.1007/s10750-017-3381-2] [Cited by in Crossref: 60] [Cited by in F6Publishing: 36] [Article Influence: 10.0] [Reference Citation Analysis]
|
| 606 |
Wang Q, Wang N, Wang Y, Wang Q, Duan B. Differences in root-associated bacterial communities among fine root branching orders of poplar (Populus × euramericana (Dode) Guinier.). Plant Soil 2017;421:123-35. [DOI: 10.1007/s11104-017-3449-9] [Cited by in Crossref: 9] [Cited by in F6Publishing: 11] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 607 |
Lee YX, Chen CW, Lin YH, Tzeng CR, Chen CH. Prediction of a rare chromosomal aberration simultaneously with next generation sequencing-based comprehensive chromosome screening in human preimplantation embryos for recurrent pregnancy loss. J Assist Reprod Genet 2018;35:171-6. [PMID: 28965243 DOI: 10.1007/s10815-017-1044-x] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 608 |
Castro R, Navelsaker S, Krasnov A, Du Pasquier L, Boudinot P. Describing the diversity of Ag specific receptors in vertebrates: Contribution of repertoire deep sequencing. Developmental & Comparative Immunology 2017;75:28-37. [DOI: 10.1016/j.dci.2017.02.018] [Cited by in Crossref: 16] [Cited by in F6Publishing: 12] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 609 |
Jacobson G, Muncaster S, Mensink K, Forlenza M, Elliot N, Broomfield G, Signal B, Bird S. Omics and cytokine discovery in fish: Presenting the Yellowtail kingfish (Seriola lalandi) as a case study. Developmental & Comparative Immunology 2017;75:63-76. [DOI: 10.1016/j.dci.2017.04.001] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 610 |
Sherwood JL, Brown H, Rettino A, Schreieck A, Clark G, Claes B, Agrawal B, Chaston R, Kong BSG, Choppa P, Nygren AOH, Deras IL, Kohlmann A. Key differences between 13 KRAS mutation detection technologies and their relevance for clinical practice. ESMO Open 2017;2:e000235. [PMID: 29018576 DOI: 10.1136/esmoopen-2017-000235] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 611 |
Komissarov AS, Galkina SA, Koshel EI, Kulak MM, Dyomin AG, O'Brien SJ, Gaginskaya ER, Saifitdinova AF. New high copy tandem repeat in the content of the chicken W chromosome. Chromosoma 2018;127:73-83. [PMID: 28951974 DOI: 10.1007/s00412-017-0646-5] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 612 |
Michael Dunne W Jr, Pouseele H, Monecke S, Ehricht R, van Belkum A. Epidemiology of transmissible diseases: Array hybridization and next generation sequencing as universal nucleic acid-mediated typing tools. Infect Genet Evol 2018;63:332-45. [PMID: 28943408 DOI: 10.1016/j.meegid.2017.09.019] [Cited by in Crossref: 14] [Cited by in F6Publishing: 16] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 613 |
Cornejo-Granados F, Lopez-Zavala AA, Gallardo-Becerra L, Mendoza-Vargas A, Sánchez F, Vichido R, Brieba LG, Viana MT, Sotelo-Mundo RR, Ochoa-Leyva A. Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions. Sci Rep 2017;7:11783. [PMID: 28924190 DOI: 10.1038/s41598-017-11805-w] [Cited by in Crossref: 143] [Cited by in F6Publishing: 143] [Article Influence: 23.8] [Reference Citation Analysis]
|
| 614 |
West J. Open Source Platforms Beyond Software: From ICT to Biotechnology. Advances in Strategic Management 2017. [DOI: 10.1108/s0742-332220170000037011] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 615 |
Tedersoo L, Tooming-Klunderud A, Anslan S. PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives. New Phytol 2018;217:1370-85. [PMID: 28906012 DOI: 10.1111/nph.14776] [Cited by in Crossref: 160] [Cited by in F6Publishing: 162] [Article Influence: 26.7] [Reference Citation Analysis]
|
| 616 |
Allali I, Arnold JW, Roach J, Cadenas MB, Butz N, Hassan HM, Koci M, Ballou A, Mendoza M, Ali R, Azcarate-Peril MA. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome. BMC Microbiol 2017;17:194. [PMID: 28903732 DOI: 10.1186/s12866-017-1101-8] [Cited by in Crossref: 135] [Cited by in F6Publishing: 146] [Article Influence: 22.5] [Reference Citation Analysis]
|
| 617 |
Parajuli P, Adamski M, Verma NK. Bacteriophages are the major drivers of Shigella flexneri serotype 1c genome plasticity: a complete genome analysis. BMC Genomics 2017;18:722. [PMID: 28899344 DOI: 10.1186/s12864-017-4109-4] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 618 |
Zhang AY, Lai CL, Huang FY, Seto WK, Fung J, Wong DK, Yuen MF. Deep sequencing analysis of quasispecies in the HBV pre-S region and its association with hepatocellular carcinoma. J Gastroenterol 2017;52:1064-74. [PMID: 28353014 DOI: 10.1007/s00535-017-1334-1] [Cited by in Crossref: 10] [Cited by in F6Publishing: 12] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 619 |
Yu J, Sadakari Y, Shindo K, Suenaga M, Brant A, Almario JAN, Borges M, Barkley T, Fesharakizadeh S, Ford M, Hruban RH, Shin EJ, Lennon AM, Canto MI, Goggins M. Digital next-generation sequencing identifies low-abundance mutations in pancreatic juice samples collected from the duodenum of patients with pancreatic cancer and intraductal papillary mucinous neoplasms. Gut 2017;66:1677-87. [PMID: 27432539 DOI: 10.1136/gutjnl-2015-311166] [Cited by in Crossref: 108] [Cited by in F6Publishing: 115] [Article Influence: 18.0] [Reference Citation Analysis]
|
| 620 |
Basantani MK, Gupta D, Mehrotra R, Mehrotra S, Vaish S, Singh A. An update on bioinformatics resources for plant genomics research. Current Plant Biology 2017;11-12:33-40. [DOI: 10.1016/j.cpb.2017.12.002] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 621 |
Wan T, Zhao H, Wang W. Effect of biocontrol agent Bacillus amyloliquefaciens SN16-1 and plant pathogen Fusarium oxysporum on tomato rhizosphere bacterial community composition. Biological Control 2017;112:1-9. [DOI: 10.1016/j.biocontrol.2017.05.014] [Cited by in Crossref: 26] [Cited by in F6Publishing: 26] [Article Influence: 4.3] [Reference Citation Analysis]
|
| 622 |
[DOI: 10.1109/cluster.2017.16] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 623 |
Cortey M, Díaz I, Martín-valls G, Mateu E. Next-generation sequencing as a tool for the study of Porcine reproductive and respiratory syndrome virus (PRRSV) macro- and micro- molecular epidemiology. Veterinary Microbiology 2017;209:5-12. [DOI: 10.1016/j.vetmic.2017.02.002] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 624 |
Ruh M, Briand M, Bonneau S, Jacques MA, Chen NWG. Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors. BMC Genomics 2017;18:670. [PMID: 28854875 DOI: 10.1186/s12864-017-4087-6] [Cited by in Crossref: 24] [Cited by in F6Publishing: 26] [Article Influence: 4.0] [Reference Citation Analysis]
|
| 625 |
Ahn YJ, Markkandan K, Baek IP, Mun S, Lee W, Kim HS, Han K. An efficient and tunable parameter to improve variant calling for whole genome and exome sequencing data. Genes Genomics 2018;40:39-47. [PMID: 29892897 DOI: 10.1007/s13258-017-0608-6] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 626 |
Sun Y, Kurisaki M, Hashiguchi Y, Kumazawa Y. Variation and evolution of polyadenylation profiles in sauropsid mitochondrial mRNAs as deduced from the high-throughput RNA sequencing. BMC Genomics 2017;18:665. [PMID: 28851277 DOI: 10.1186/s12864-017-4080-0] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 627 |
Cheng M, Li Y, Ma Y, Qiu J, Yan X, He J. Complete Genome Sequence of Sphingobium baderi DE-13, an Alkyl-Substituted Aniline-Mineralizing Bacterium. Curr Microbiol 2018;75:27-31. [DOI: 10.1007/s00284-017-1346-3] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 628 |
Mehta B, Daniel R, Phillips C, Doyle S, Elvidge G, McNevin D. Massively parallel sequencing of customised forensically informative SNP panels on the MiSeq. Electrophoresis 2016;37:2832-40. [PMID: 27605155 DOI: 10.1002/elps.201600190] [Cited by in Crossref: 12] [Cited by in F6Publishing: 12] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 629 |
Song L, Huang W, Kang J, Huang Y, Ren H, Ding K. Comparison of error correction algorithms for Ion Torrent PGM data: application to hepatitis B virus. Sci Rep 2017;7:8106. [PMID: 28808243 DOI: 10.1038/s41598-017-08139-y] [Cited by in Crossref: 19] [Cited by in F6Publishing: 19] [Article Influence: 3.2] [Reference Citation Analysis]
|
| 630 |
Lahens NF, Ricciotti E, Smirnova O, Toorens E, Kim EJ, Baruzzo G, Hayer KE, Ganguly T, Schug J, Grant GR. A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression. BMC Genomics 2017;18:602. [PMID: 28797240 DOI: 10.1186/s12864-017-4011-0] [Cited by in Crossref: 46] [Cited by in F6Publishing: 45] [Article Influence: 7.7] [Reference Citation Analysis]
|
| 631 |
Bunning BJ, DeKruyff RH, Nadeau KC. Epigenetic Changes During Food-Specific Immunotherapy. Curr Allergy Asthma Rep 2016;16:87. [PMID: 27943047 DOI: 10.1007/s11882-016-0665-y] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 632 |
Faulkner GJ, Garcia-Perez JL. L1 Mosaicism in Mammals: Extent, Effects, and Evolution. Trends Genet 2017;33:802-16. [PMID: 28797643 DOI: 10.1016/j.tig.2017.07.004] [Cited by in Crossref: 77] [Cited by in F6Publishing: 61] [Article Influence: 12.8] [Reference Citation Analysis]
|
| 633 |
Noronha MF, Lacerda Júnior GV, Gilbert JA, de Oliveira VM. Taxonomic and functional patterns across soil microbial communities of global biomes. Sci Total Environ 2017;609:1064-74. [PMID: 28787780 DOI: 10.1016/j.scitotenv.2017.07.159] [Cited by in Crossref: 25] [Cited by in F6Publishing: 20] [Article Influence: 4.2] [Reference Citation Analysis]
|
| 634 |
Yasukawa K, Iida K, Okano H, Hidese R, Baba M, Yanagihara I, Kojima K, Takita T, Fujiwara S. Next-generation sequencing-based analysis of reverse transcriptase fidelity. Biochem Biophys Res Commun 2017;492:147-53. [PMID: 28778390 DOI: 10.1016/j.bbrc.2017.07.169] [Cited by in Crossref: 16] [Cited by in F6Publishing: 17] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 635 |
Pillai S, Gopalan V, Lam AK. Review of sequencing platforms and their applications in phaeochromocytoma and paragangliomas. Critical Reviews in Oncology/Hematology 2017;116:58-67. [DOI: 10.1016/j.critrevonc.2017.05.005] [Cited by in Crossref: 25] [Cited by in F6Publishing: 27] [Article Influence: 4.2] [Reference Citation Analysis]
|
| 636 |
Korpershoek E, van Nederveen FH, Komminoth P, de Krijger RR. Familial endocrine tumours: pheochromocytomas and extra-adrenal paragangliomas – an update. Diagnostic Histopathology 2017;23:335-45. [DOI: 10.1016/j.mpdhp.2017.06.001] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 637 |
Chen C, Ghaffari N, Qian X, Yoon B. Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy. Computational Biology and Chemistry 2017;69:153-63. [DOI: 10.1016/j.compbiolchem.2017.03.016] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 638 |
Maia A, Sammut S, Jacinta-fernandes A, Chin S. Big data in cancer genomics. Current Opinion in Systems Biology 2017;4:78-84. [DOI: 10.1016/j.coisb.2017.07.007] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 639 |
Tessler M, Neumann JS, Afshinnekoo E, Pineda M, Hersch R, Velho LFM, Segovia BT, Lansac-Toha FA, Lemke M, DeSalle R, Mason CE, Brugler MR. Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing. Sci Rep 2017;7:6589. [PMID: 28761145 DOI: 10.1038/s41598-017-06665-3] [Cited by in Crossref: 129] [Cited by in F6Publishing: 131] [Article Influence: 21.5] [Reference Citation Analysis]
|
| 640 |
Zhang S, Kelleher ES. Targeted identification of TE insertions in a Drosophila genome through hemi-specific PCR. Mob DNA 2017;8:10. [PMID: 28775768 DOI: 10.1186/s13100-017-0092-1] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 641 |
Chang S, Zhang G, Chen X, Long H, Wang Y, Chen T, Liu G. The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4. Stand Genomic Sci 2017;12:45. [PMID: 28770030 DOI: 10.1186/s40793-017-0249-z] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 642 |
Seo H, Park Y, Min BJ, Seo ME, Kim JH. Evaluation of exome variants using the Ion Proton Platform to sequence error-prone regions. PLoS One 2017;12:e0181304. [PMID: 28742110 DOI: 10.1371/journal.pone.0181304] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 643 |
Rakhit C, Ottolini B, Jones C, Pringle J, Shaw J, Martins LM. Peptide nucleic acid clamping to improve the sensitivity of Ion Torrent-based detection of an oncogenic mutation in <em>KRAS</em>. Matters. [DOI: 10.19185/matters.201706000001] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 644 |
Roe A, Dupuis J, Sperling F. Molecular Dimensions of Insect Taxonomy in the Genomics Era. Insect Biodiversity 2017. [DOI: 10.1002/9781118945568.ch16] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 645 |
Jian Y, Xu C, Guo Z, Wang S, Xu Y, Zou C. Maize (Zea mays L.) genome size indicated by 180-bp knob abundance is associated with flowering time. Sci Rep 2017;7:5954. [PMID: 28729714 DOI: 10.1038/s41598-017-06153-8] [Cited by in Crossref: 16] [Cited by in F6Publishing: 18] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 646 |
Miller JR, Zhou P, Mudge J, Gurtowski J, Lee H, Ramaraj T, Walenz BP, Liu J, Stupar RM, Denny R, Song L, Singh N, Maron LG, McCouch SR, McCombie WR, Schatz MC, Tiffin P, Young ND, Silverstein KAT. Hybrid assembly with long and short reads improves discovery of gene family expansions. BMC Genomics 2017;18:541. [PMID: 28724409 DOI: 10.1186/s12864-017-3927-8] [Cited by in Crossref: 37] [Cited by in F6Publishing: 40] [Article Influence: 6.2] [Reference Citation Analysis]
|
| 647 |
Liu J, Adhav R, Xu X. Current Progresses of Single Cell DNA Sequencing in Breast Cancer Research. Int J Biol Sci 2017;13:949-60. [PMID: 28924377 DOI: 10.7150/ijbs.19627] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 648 |
Utturkar SM, Klingeman DM, Hurt RA Jr, Brown SD. A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies. Front Microbiol 2017;8:1272. [PMID: 28769883 DOI: 10.3389/fmicb.2017.01272] [Cited by in Crossref: 22] [Cited by in F6Publishing: 21] [Article Influence: 3.7] [Reference Citation Analysis]
|
| 649 |
Park J, Yoo HM, Jang W, Shin S, Kim M, Kim Y, Lee SW, Kim JG. Distribution of somatic mutations of cancer-related genes according to microsatellite instability status in Korean gastric cancer. Medicine (Baltimore) 2017;96:e7224. [PMID: 28640116 DOI: 10.1097/MD.0000000000007224] [Cited by in Crossref: 7] [Cited by in F6Publishing: 9] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 650 |
Wang JS, Yan YH, Zhang DY. Modular probes for enriching and detecting complex nucleic acid sequences. Nat Chem 2017;9:1222-8. [PMID: 29168489 DOI: 10.1038/nchem.2820] [Cited by in Crossref: 29] [Cited by in F6Publishing: 29] [Article Influence: 4.8] [Reference Citation Analysis]
|
| 651 |
Schlecht U, Mok J, Dallett C, Berka J. ConcatSeq: A method for increasing throughput of single molecule sequencing by concatenating short DNA fragments. Sci Rep 2017;7:5252. [PMID: 28701704 DOI: 10.1038/s41598-017-05503-w] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 652 |
Chen GL, Zhang Y, Wang WY, Ji XL, Meng F, Xu PS, Yang NM, Ye FQ, Bo XC. Partners of patients with ulcerative colitis exhibit a biologically relevant dysbiosis in fecal microbial metacommunities. World J Gastroenterol 2017; 23(25): 4624-4631 [PMID: 28740351 DOI: 10.3748/wjg.v23.i25.4624] [Cited by in CrossRef: 19] [Cited by in F6Publishing: 19] [Article Influence: 3.2] [Reference Citation Analysis]
|
| 653 |
Kandathil AJ, Breitwieser FP, Sachithanandham J, Robinson M, Mehta SH, Timp W, Salzberg SL, Thomas DL, Balagopal A. Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs. Ann Intern Med 2017;167:1-7. [PMID: 28586923 DOI: 10.7326/M17-0085] [Cited by in Crossref: 23] [Cited by in F6Publishing: 23] [Article Influence: 3.8] [Reference Citation Analysis]
|
| 654 |
Looi QH, Amin H, Aini I, Zuki M, Omar AR. De novo transcriptome analysis shows differential expression of genes in salivary glands of edible bird's nest producing swiftlets. BMC Genomics 2017;18:504. [PMID: 28673247 DOI: 10.1186/s12864-017-3861-9] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 655 |
Riman S, Kiesler KM, Borsuk LA, Vallone PM. Characterization of NIST human mitochondrial DNA SRM-2392 and SRM-2392-I standard reference materials by next generation sequencing. Forensic Science International: Genetics 2017;29:181-92. [DOI: 10.1016/j.fsigen.2017.04.005] [Cited by in Crossref: 16] [Cited by in F6Publishing: 11] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 656 |
Dorok S, Breß S, Teubner J, Läpple H, Saake G, Markl V. Efficiently Storing and Analyzing Genome Data in Database Systems. Datenbank Spektrum 2017;17:139-154. [DOI: 10.1007/s13222-017-0254-9] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 657 |
Nkili-Meyong AA, Bigarré L, Labouba I, Vallaeys T, Avarre JC, Berthet N. Contribution of Next-Generation Sequencing to Aquatic and Fish Virology. Intervirology 2016;59:285-300. [PMID: 28668959 DOI: 10.1159/000477808] [Cited by in Crossref: 22] [Cited by in F6Publishing: 22] [Article Influence: 3.7] [Reference Citation Analysis]
|
| 658 |
Lee S, Kim S, Fuchsberger C. Improving power for rare-variant tests by integrating external controls. Genet Epidemiol 2017;41:610-9. [PMID: 28657150 DOI: 10.1002/gepi.22057] [Cited by in Crossref: 11] [Cited by in F6Publishing: 13] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 659 |
Buzolin AL, Moreira CM, Sacramento PR, Oku AY, Fornari ARDS, Antonio DSM, Quaio CRDAC, Baratela WR, Mitne-Neto M. Development and validation of a variant detection workflow for BRCA1 and BRCA2 genes and its clinical application based on the Ion Torrent technology. Hum Genomics 2017;11:14. [PMID: 28651617 DOI: 10.1186/s40246-017-0110-x] [Cited by in Crossref: 8] [Cited by in F6Publishing: 9] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 660 |
Shields EJ, Bonasio R. High-quality genome assemblies uncover caste-specific long non-coding RNAs in ants.. [DOI: 10.1101/155119] [Reference Citation Analysis]
|
| 661 |
Misyura M, Zhang T, Sukhai MA, Thomas M, Garg S, Kamel-Reid S, Stockley TL. Comparison of Next-Generation Sequencing Panels and Platforms for Detection and Verification of Somatic Tumor Variants for Clinical Diagnostics. J Mol Diagn 2016;18:842-50. [PMID: 27770852 DOI: 10.1016/j.jmoldx.2016.06.004] [Cited by in Crossref: 31] [Cited by in F6Publishing: 32] [Article Influence: 5.2] [Reference Citation Analysis]
|
| 662 |
Hagberg EE, Pedersen AG, Larsen LE, Krarup A. Evolutionary analysis of whole-genome sequences confirms inter-farm transmission of Aleutian mink disease virus. J Gen Virol 2017;98:1360-71. [PMID: 28612703 DOI: 10.1099/jgv.0.000777] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 663 |
Jia J, Xu Z, Xin T, Shi L, Song J. Quality Control of the Traditional Patent Medicine Yimu Wan Based on SMRT Sequencing and DNA Barcoding. Front Plant Sci 2017;8:926. [PMID: 28620408 DOI: 10.3389/fpls.2017.00926] [Cited by in Crossref: 27] [Cited by in F6Publishing: 28] [Article Influence: 4.5] [Reference Citation Analysis]
|
| 664 |
Liao P, Satten GA, Hu YJ. PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies. Genet Epidemiol 2017;41:375-87. [PMID: 28560825 DOI: 10.1002/gepi.22048] [Cited by in Crossref: 16] [Cited by in F6Publishing: 19] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 665 |
Margos G, Hepner S, Mang C, Marosevic D, Reynolds SE, Krebs S, Sing A, Derdakova M, Reiter MA, Fingerle V. Lost in plasmids: next generation sequencing and the complex genome of the tick-borne pathogen Borrelia burgdorferi. BMC Genomics 2017;18:422. [PMID: 28558786 DOI: 10.1186/s12864-017-3804-5] [Cited by in Crossref: 38] [Cited by in F6Publishing: 39] [Article Influence: 6.3] [Reference Citation Analysis]
|
| 666 |
Albrecht V, Zweiniger C, Surendranath V, Lang K, Schöfl G, Dahl A, Winkler S, Lange V, Böhme I, Schmidt AH. Dual redundant sequencing strategy: Full-length gene characterisation of 1056 novel and confirmatory HLA alleles. HLA 2017;90:79-87. [PMID: 28547825 DOI: 10.1111/tan.13057] [Cited by in Crossref: 49] [Cited by in F6Publishing: 50] [Article Influence: 8.2] [Reference Citation Analysis]
|
| 667 |
Bårnes GK, Brynildsrud OB, Børud B, Workalemahu B, Kristiansen PA, Beyene D, Aseffa A, Caugant DA. Whole genome sequencing reveals within-host genetic changes in paired meningococcal carriage isolates from Ethiopia. BMC Genomics 2017;18:407. [PMID: 28545446 DOI: 10.1186/s12864-017-3806-3] [Cited by in Crossref: 20] [Cited by in F6Publishing: 21] [Article Influence: 3.3] [Reference Citation Analysis]
|
| 668 |
Wu Z, Gu C, Tembrock LR, Zhang D, Ge S. Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species. PLoS One 2017;12:e0177553. [PMID: 28542519 DOI: 10.1371/journal.pone.0177553] [Cited by in Crossref: 9] [Cited by in F6Publishing: 10] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 669 |
Aivelo T, Medlar A. Opportunities and challenges in metabarcoding approaches for helminth community identification in wild mammals. Parasitology 2018;145:608-21. [PMID: 28534454 DOI: 10.1017/S0031182017000610] [Cited by in Crossref: 17] [Cited by in F6Publishing: 18] [Article Influence: 2.8] [Reference Citation Analysis]
|
| 670 |
Lowe R, Shirley N, Bleackley M, Dolan S, Shafee T. Transcriptomics technologies. PLoS Comput Biol 2017;13:e1005457. [PMID: 28545146 DOI: 10.1371/journal.pcbi.1005457] [Cited by in Crossref: 437] [Cited by in F6Publishing: 457] [Article Influence: 72.8] [Reference Citation Analysis]
|
| 671 |
Kaul KL. Preparing pathology for precision medicine: challenges and opportunities. Virchows Arch 2017;471:141-6. [PMID: 28512674 DOI: 10.1007/s00428-017-2141-z] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 672 |
Goodwin S, McPherson JD, McCombie WR. Coming of age: Ten years of next-generation sequencing technologies. Nat Rev Genet. 2016;17:333-351. [PMID: 27184599 DOI: 10.1038/nrg.2016.49] [Cited by in Crossref: 2404] [Cited by in F6Publishing: 2433] [Article Influence: 400.7] [Reference Citation Analysis]
|
| 673 |
Rawson JMO, Gohl DM, Landman SR, Roth ME, Meissner ME, Peterson TS, Hodges JS, Beckman KB, Mansky LM. Single-Strand Consensus Sequencing Reveals that HIV Type but not Subtype Significantly Impacts Viral Mutation Frequencies and Spectra. J Mol Biol 2017;429:2290-307. [PMID: 28502791 DOI: 10.1016/j.jmb.2017.05.010] [Cited by in Crossref: 11] [Cited by in F6Publishing: 7] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 674 |
Qiu Y, Chen JM, Wang T, Hou GY, Zhuang QY, Wu R, Wang KC. Detection of viromes of RNA viruses using the next generation sequencing libraries prepared by three methods. Virus Res 2017;237:22-6. [PMID: 28501627 DOI: 10.1016/j.virusres.2017.05.003] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 1.2] [Reference Citation Analysis]
|
| 675 |
Eisfeldt J, Vezzi F, Olason P, Nilsson D, Lindstrand A. TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data. F1000Res 2017;6:664. [PMID: 28781756 DOI: 10.12688/f1000research.11168.2] [Cited by in Crossref: 40] [Cited by in F6Publishing: 41] [Article Influence: 6.7] [Reference Citation Analysis]
|
| 676 |
Eisfeldt J, Vezzi F, Olason P, Nilsson D, Lindstrand A. TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data. F1000Res 2017;6:664. [PMID: 28781756 DOI: 10.12688/f1000research.11168.2] [Cited by in Crossref: 12] [Cited by in F6Publishing: 34] [Article Influence: 2.0] [Reference Citation Analysis]
|
| 677 |
Gao X, Lin H, Revanna K, Dong Q. A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy. BMC Bioinformatics 2017;18:247. [PMID: 28486927 DOI: 10.1186/s12859-017-1670-4] [Cited by in Crossref: 100] [Cited by in F6Publishing: 103] [Article Influence: 16.7] [Reference Citation Analysis]
|
| 678 |
Perez M, Juniper SK. Is the trophosome of Ridgeia piscesae monoclonal? Symbiosis 2018;74:55-65. [DOI: 10.1007/s13199-017-0490-7] [Cited by in Crossref: 6] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 679 |
Maruki T, Lynch M. Genotype Calling from Population-Genomic Sequencing Data. G3 (Bethesda) 2017;7:1393-404. [PMID: 28108551 DOI: 10.1534/g3.117.039008] [Cited by in Crossref: 48] [Cited by in F6Publishing: 54] [Article Influence: 8.0] [Reference Citation Analysis]
|
| 680 |
Unnikrishnan A, Jackson J, Matyi SA, Hadad N, Wronowski B, Georgescu C, Garrett KP, Wren JD, Freeman WM, Richardson A. Role of DNA methylation in the dietary restriction mediated cellular memory. Geroscience 2017;39:331-45. [PMID: 28477138 DOI: 10.1007/s11357-017-9976-8] [Cited by in Crossref: 19] [Cited by in F6Publishing: 15] [Article Influence: 3.2] [Reference Citation Analysis]
|
| 681 |
Matsa E, Ahrens JH, Wu JC. Human Induced Pluripotent Stem Cells as a Platform for Personalized and Precision Cardiovascular Medicine. Physiol Rev 2016;96:1093-126. [PMID: 27335446 DOI: 10.1152/physrev.00036.2015] [Cited by in Crossref: 81] [Cited by in F6Publishing: 84] [Article Influence: 13.5] [Reference Citation Analysis]
|
| 682 |
Prawira A, Pugh T, Stockley T, Siu L. Data resources for the identification and interpretation of actionable mutations by clinicians. Annals of Oncology 2017;28:946-57. [DOI: 10.1093/annonc/mdx023] [Cited by in Crossref: 16] [Cited by in F6Publishing: 18] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 683 |
de la Puente M, Phillips C, Santos C, Fondevila M, Carracedo Á, Lareu M. Evaluation of the Qiagen 140-SNP forensic identification multiplex for massively parallel sequencing. Forensic Science International: Genetics 2017;28:35-43. [DOI: 10.1016/j.fsigen.2017.01.012] [Cited by in Crossref: 27] [Cited by in F6Publishing: 27] [Article Influence: 4.5] [Reference Citation Analysis]
|
| 684 |
Xu S, Lu W, Liu Y, Ming Z, Liu Y, Meng R, Wang H. Structure and diversity of bacterial communities in two large sanitary landfills in China as revealed by high-throughput sequencing (MiSeq). Waste Management 2017;63:41-8. [DOI: 10.1016/j.wasman.2016.07.047] [Cited by in Crossref: 81] [Cited by in F6Publishing: 71] [Article Influence: 13.5] [Reference Citation Analysis]
|
| 685 |
Karouia F, Peyvan K, Pohorille A. Toward biotechnology in space: High-throughput instruments for in situ biological research beyond Earth. Biotechnol Adv 2017;35:905-32. [PMID: 28433608 DOI: 10.1016/j.biotechadv.2017.04.003] [Cited by in Crossref: 35] [Cited by in F6Publishing: 26] [Article Influence: 5.8] [Reference Citation Analysis]
|
| 686 |
Mehta B, Venables S, Roffey P. Comparison between magnetic bead and qPCR library normalisation methods for forensic MPS genotyping. Int J Legal Med 2018;132:125-32. [PMID: 28417259 DOI: 10.1007/s00414-017-1591-9] [Cited by in Crossref: 8] [Cited by in F6Publishing: 9] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 687 |
Wilkinson MJ, Szabo C, Ford CS, Yarom Y, Croxford AE, Camp A, Gooding P. Replacing Sanger with Next Generation Sequencing to improve coverage and quality of reference DNA barcodes for plants. Sci Rep 2017;7:46040. [PMID: 28401958 DOI: 10.1038/srep46040] [Cited by in Crossref: 31] [Cited by in F6Publishing: 32] [Article Influence: 5.2] [Reference Citation Analysis]
|
| 688 |
Hwang SM, Lee KC, Lee MS, Park KU. Comparison of Ion Personal Genome Machine Platforms for the Detection of Variants in BRCA1 and BRCA2. Cancer Res Treat 2018;50:255-64. [PMID: 28392550 DOI: 10.4143/crt.2017.062] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 689 |
Parmar KM, Gaikwad SL, Dhakephalkar PK, Kothari R, Singh RP. Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of Omics. Front Microbiol 2017;8:559. [PMID: 28439260 DOI: 10.3389/fmicb.2017.00559] [Cited by in Crossref: 28] [Cited by in F6Publishing: 28] [Article Influence: 4.7] [Reference Citation Analysis]
|
| 690 |
Stephens CM, Adams-Sapper S, Sekhon M, Johnson JR, Riley LW. Genomic Analysis of Factors Associated with Low Prevalence of Antibiotic Resistance in Extraintestinal Pathogenic Escherichia coli Sequence Type 95 Strains. mSphere 2017;2:e00390-16. [PMID: 28405633 DOI: 10.1128/mSphere.00390-16] [Cited by in Crossref: 27] [Cited by in F6Publishing: 28] [Article Influence: 4.5] [Reference Citation Analysis]
|
| 691 |
Veldman S, Gravendeel B, Otieno JN, Lammers Y, Duijm E, Nieman A, Bytebier B, Ngugi G, Martos F, van Andel TR, de Boer HJ. High-throughput sequencing of African chikanda cake highlights conservation challenges in orchids. Biodivers Conserv 2017;26:2029-46. [DOI: 10.1007/s10531-017-1343-7] [Cited by in Crossref: 14] [Cited by in F6Publishing: 4] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 692 |
Hampel KJ, de Abreu FB, Sidiropoulos N, Peterson JD, Tsongalis GJ. Variant call concordance between two laboratory-developed, solid tumor targeted genomic profiling assays using distinct workflows and sequencing instruments. Experimental and Molecular Pathology 2017;102:215-8. [DOI: 10.1016/j.yexmp.2017.02.002] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 693 |
[DOI: 10.1109/fccm.2017.23] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 694 |
L Machado S, Gonçalves GS, Dudley D, O'Connor D, Keiko Toma H, Fernandes JC, Tanuri A. Development of a Qualitative Quantitative Polymerase Chain Reaction Test to Identify Patients Failing First-Line Therapy to Non-Nucleotide Reverse Transcriptase Inhibitor. AIDS Res Hum Retroviruses 2017;33:386-94. [PMID: 27819156 DOI: 10.1089/AID.2016.0152] [Reference Citation Analysis]
|
| 695 |
Zhang TX, Saccone NL, Bierut LJ, Rice JP. Targeted sequencing identifies genetic polymorphisms of flavin-containing monooxygenase genes contributing to susceptibility of nicotine dependence in European American and African American. Brain Behav 2017;7:e00651. [PMID: 28413702 DOI: 10.1002/brb3.651] [Cited by in Crossref: 10] [Cited by in F6Publishing: 11] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 696 |
Zhang AY, Lai CL, Huang FY, Seto WK, Fung J, Wong DK, Yuen MF. Deep sequencing analysis of quasispecies in the HBV pre-S region and its association with hepatocellular carcinoma. J Gastroenterol. 2017;52:1064-1074. [PMID: 28353014 DOI: 10.1007/s00535-017-1334-1.] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
|
| 697 |
Jennings LJ, Arcila ME, Corless C, Kamel-Reid S, Lubin IM, Pfeifer J, Temple-Smolkin RL, Voelkerding KV, Nikiforova MN. Guidelines for Validation of Next-Generation Sequencing-Based Oncology Panels: A Joint Consensus Recommendation of the Association for Molecular Pathology and College of American Pathologists. J Mol Diagn. 2017;19:341-365. [PMID: 28341590 DOI: 10.1016/j.jmoldx.2017.01.011] [Cited by in Crossref: 349] [Cited by in F6Publishing: 283] [Article Influence: 58.2] [Reference Citation Analysis]
|
| 698 |
Österlund T, Cvijovic M, Kristiansson E. Integrative Analysis of Omics Data. Systems Biology 2017. [DOI: 10.1002/9783527696130.ch1] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 699 |
Garrido-Cardenas JA, Garcia-Maroto F, Alvarez-Bermejo JA, Manzano-Agugliaro F. DNA Sequencing Sensors: An Overview. Sensors (Basel) 2017;17:E588. [PMID: 28335417 DOI: 10.3390/s17030588] [Cited by in Crossref: 41] [Cited by in F6Publishing: 42] [Article Influence: 6.8] [Reference Citation Analysis]
|
| 700 |
Chen S, Huang T, Zhou Y, Han Y, Xu M, Gu J. AfterQC: automatic filtering, trimming, error removing and quality control for fastq data. BMC Bioinformatics 2017;18:80. [PMID: 28361673 DOI: 10.1186/s12859-017-1469-3] [Cited by in Crossref: 184] [Cited by in F6Publishing: 191] [Article Influence: 30.7] [Reference Citation Analysis]
|
| 701 |
King JL, Wendt FR, Sun J, Budowle B. STRait Razor v2s: Advancing sequence-based STR allele reporting and beyond to other marker systems. Forensic Sci Int Genet 2017;29:21-8. [PMID: 28343097 DOI: 10.1016/j.fsigen.2017.03.013] [Cited by in Crossref: 29] [Cited by in F6Publishing: 32] [Article Influence: 4.8] [Reference Citation Analysis]
|
| 702 |
Verde I, Jenkins J, Dondini L, Micali S, Pagliarani G, Vendramin E, Paris R, Aramini V, Gazza L, Rossini L, Bassi D, Troggio M, Shu S, Grimwood J, Tartarini S, Dettori MT, Schmutz J. The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity. BMC Genomics 2017;18:225. [PMID: 28284188 DOI: 10.1186/s12864-017-3606-9] [Cited by in Crossref: 215] [Cited by in F6Publishing: 223] [Article Influence: 35.8] [Reference Citation Analysis]
|
| 703 |
Taheri S, Abdullah TL, Jain SM, Sahebi M, Azizi P. TILLING, high-resolution melting (HRM), and next-generation sequencing (NGS) techniques in plant mutation breeding. Mol Breeding 2017;37. [DOI: 10.1007/s11032-017-0643-7] [Cited by in Crossref: 26] [Cited by in F6Publishing: 26] [Article Influence: 4.3] [Reference Citation Analysis]
|
| 704 |
Orzińska A, Guz K, Mikula M, Kulecka M, Kluska A, Balabas A, Pelc-Kłopotowska M, Ostrowski J, Brojer E. A preliminary evaluation of next-generation sequencing as a screening tool for targeted genotyping of erythrocyte and platelet antigens in blood donors. Blood Transfus 2018;16:285-92. [PMID: 28287381 DOI: 10.2450/2017.0253-16] [Cited by in F6Publishing: 9] [Reference Citation Analysis]
|
| 705 |
Ning G, Cheng X, Luo P, Liang F, Wang Z, Yu G, Li X, Wang D, Bao M. Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genome. Sci Rep 2017;7:43793. [PMID: 28272530 DOI: 10.1038/srep43793] [Cited by in Crossref: 22] [Cited by in F6Publishing: 22] [Article Influence: 3.7] [Reference Citation Analysis]
|
| 706 |
Zhang S, Bian Y, Chen A, Zheng H, Gao Y, Hou Y, Li C. Developmental validation of a custom panel including 273 SNPs for forensic application using Ion Torrent PGM. Forensic Science International: Genetics 2017;27:50-7. [DOI: 10.1016/j.fsigen.2016.12.003] [Cited by in Crossref: 29] [Cited by in F6Publishing: 30] [Article Influence: 4.8] [Reference Citation Analysis]
|
| 707 |
Ogunade I, Jiang Y, Kim D, Cervantes AP, Arriola K, Vyas D, Weinberg Z, Jeong K, Adesogan A. Fate of Escherichia coli O157:H7 and bacterial diversity in corn silage contaminated with the pathogen and treated with chemical or microbial additives. Journal of Dairy Science 2017;100:1780-94. [DOI: 10.3168/jds.2016-11745] [Cited by in Crossref: 48] [Cited by in F6Publishing: 53] [Article Influence: 8.0] [Reference Citation Analysis]
|
| 708 |
Huq M, Van TTH, Gurtler V, Elshagmani E, Allemailem KS, Smooker PM, Istivan T. The ribosomal RNA operon ( rrn ) of Campylobacter concisus supports molecular typing to genomospecies level. Gene Reports 2017;6:8-14. [DOI: 10.1016/j.genrep.2016.10.008] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 709 |
Elsensohn MH, Leblay N, Dimassi S, Campan-Fournier A, Labalme A, Roucher-Boulez F, Sanlaville D, Lesca G, Bardel C, Roy P. Statistical method to compare massive parallel sequencing pipelines. BMC Bioinformatics 2017;18:139. [PMID: 28249565 DOI: 10.1186/s12859-017-1552-9] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 710 |
Mancabelli L, Milani C, Lugli GA, Turroni F, Ferrario C, van Sinderen D, Ventura M. Meta-analysis of the human gut microbiome from urbanized and pre-agricultural populations. Environ Microbiol 2017;19:1379-90. [PMID: 28198087 DOI: 10.1111/1462-2920.13692] [Cited by in Crossref: 90] [Cited by in F6Publishing: 97] [Article Influence: 15.0] [Reference Citation Analysis]
|
| 711 |
Price A, Garhyan J, Gibas C. The impact of RNA secondary structure on read start locations on the Illumina sequencing platform. PLoS One 2017;12:e0173023. [PMID: 28245230 DOI: 10.1371/journal.pone.0173023] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 712 |
van Aerle R, Santos EM. Advances in the application of high-throughput sequencing in invertebrate virology. J Invertebr Pathol 2017;147:145-56. [PMID: 28249815 DOI: 10.1016/j.jip.2017.02.006] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 1.5] [Reference Citation Analysis]
|
| 713 |
Namjoshi SV, Raab-Graham KF. Screening the Molecular Framework Underlying Local Dendritic mRNA Translation. Front Mol Neurosci 2017;10:45. [PMID: 28286470 DOI: 10.3389/fnmol.2017.00045] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 714 |
Ng S, Gisonni-Lex L, Azizi A. New approaches for characterization of the genetic stability of vaccine cell lines. Hum Vaccin Immunother 2017;13:1669-72. [PMID: 28333573 DOI: 10.1080/21645515.2017.1295191] [Cited by in Crossref: 6] [Cited by in F6Publishing: 7] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 715 |
Sandmann S, de Graaf AO, van der Reijden BA, Jansen JH, Dugas M. GLM-based optimization of NGS data analysis: A case study of Roche 454, Ion Torrent PGM and Illumina NextSeq sequencing data. PLoS One 2017;12:e0171983. [PMID: 28222155 DOI: 10.1371/journal.pone.0171983] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 716 |
Gaete-loyola J, Lagos C, Beltrán MF, Valenzuela S, Emhart V, Fernández M. Transcriptome profiling of Eucalyptus nitens reveals deeper insight into the molecular mechanism of cold acclimation and deacclimation process. Tree Genetics & Genomes 2017;13. [DOI: 10.1007/s11295-017-1121-4] [Cited by in Crossref: 14] [Cited by in F6Publishing: 15] [Article Influence: 2.3] [Reference Citation Analysis]
|
| 717 |
Noune C, Hauxwell C. MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data. Biology (Basel) 2017;6:E14. [PMID: 28218638 DOI: 10.3390/biology6010014] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 718 |
Nieuwenhuijse DF, Koopmans MP. Metagenomic Sequencing for Surveillance of Food- and Waterborne Viral Diseases. Front Microbiol 2017;8:230. [PMID: 28261185 DOI: 10.3389/fmicb.2017.00230] [Cited by in Crossref: 41] [Cited by in F6Publishing: 43] [Article Influence: 6.8] [Reference Citation Analysis]
|
| 719 |
Jugulam M, Gaines T, Tranel P, Fleming M, Patterson E, Küpper A, Ravet K, Giacomini D, Gonzalez S, Beffa R. Applications of Genomics in Weed Science. Biology, Physiology and Molecular Biology of Weeds 2017. [DOI: 10.1201/9781315121031-12] [Reference Citation Analysis]
|
| 720 |
Zhang S, Bian Y, Chen A, Zheng H, Gao Y, Hou Y, Li C. Massively parallel sequencing of 231 autosomal SNPs with a custom panel: a SNP typing assay developed for human identification with Ion Torrent PGM. Forensic Sci Res 2017;2:26-33. [PMID: 30483616 DOI: 10.1080/20961790.2017.1281011] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
|
| 721 |
Alikian M, Gale RP, Apperley JF, Foroni L. Molecular techniques for the personalised management of patients with chronic myeloid leukaemia. Biomol Detect Quantif 2017;11:4-20. [PMID: 28331814 DOI: 10.1016/j.bdq.2017.01.001] [Cited by in Crossref: 29] [Cited by in F6Publishing: 30] [Article Influence: 4.8] [Reference Citation Analysis]
|
| 722 |
Addo-Quaye C, Buescher E, Best N, Chaikam V, Baxter I, Dilkes BP. Forward Genetics by Sequencing EMS Variation-Induced Inbred Lines. G3 (Bethesda) 2017;7:413-25. [PMID: 28040779 DOI: 10.1534/g3.116.029660] [Cited by in Crossref: 19] [Cited by in F6Publishing: 19] [Article Influence: 3.2] [Reference Citation Analysis]
|
| 723 |
Crea F, Forman M, Hulme R, Old RW, Ryan D, Mazey R, Risley MD. The IONA® Test: Development of an Automated Cell-Free DNA-Based Screening Test for Fetal Trisomies 13, 18, and 21 That Employs the Ion Proton Semiconductor Sequencing Platform. Fetal Diagn Ther 2017;42:218-24. [PMID: 28171857 DOI: 10.1159/000455025] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 1.8] [Reference Citation Analysis]
|
| 724 |
Jones BM, Kustka AB. A quantitative SMRT cell sequencing method for ribosomal amplicons. J Microbiol Methods 2017;135:77-84. [PMID: 28159629 DOI: 10.1016/j.mimet.2017.01.017] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 725 |
Guo L, Xia J, Yang S, Li M, Chen X, Lin H, Meng Z. Rapid detection of SNPs in candidate genes regulating the growth of orange-spotted grouper, Epinephelus coioides (Hamilton, 1822), using semiconductor sequencing. Aquac Res 2017;48:494-504. [DOI: 10.1111/are.12897] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 726 |
Fichou Y, Le Maréchal C, Férec C. Next-generation sequencing for blood group genotyping. VOXS 2017;12:184-190. [DOI: 10.1111/voxs.12311] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 727 |
Pegoraro S, Duffey M, Otto TD, Wang Y, Rösemann R, Baumgartner R, Fehler SK, Lucantoni L, Avery VM, Moreno-Sabater A, Mazier D, Vial HJ, Strobl S, Sanchez CP, Lanzer M. SC83288 is a clinical development candidate for the treatment of severe malaria. Nat Commun 2017;8:14193. [PMID: 28139658 DOI: 10.1038/ncomms14193] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 2.5] [Reference Citation Analysis]
|
| 728 |
McHugh AJ, Feehily C, Hill C, Cotter PD. Detection and Enumeration of Spore-Forming Bacteria in Powdered Dairy Products. Front Microbiol 2017;8:109. [PMID: 28197144 DOI: 10.3389/fmicb.2017.00109] [Cited by in Crossref: 38] [Cited by in F6Publishing: 40] [Article Influence: 6.3] [Reference Citation Analysis]
|
| 729 |
Vendrell JA, Mau-Them FT, Béganton B, Godreuil S, Coopman P, Solassol J. Circulating Cell Free Tumor DNA Detection as a Routine Tool forLung Cancer Patient Management. Int J Mol Sci 2017;18:E264. [PMID: 28146051 DOI: 10.3390/ijms18020264] [Cited by in Crossref: 59] [Cited by in F6Publishing: 66] [Article Influence: 9.8] [Reference Citation Analysis]
|
| 730 |
Jäger AC, Alvarez ML, Davis CP, Guzmán E, Han Y, Way L, Walichiewicz P, Silva D, Pham N, Caves G, Bruand J, Schlesinger F, Pond SJK, Varlaro J, Stephens KM, Holt CL. Developmental validation of the MiSeq FGx Forensic Genomics System for Targeted Next Generation Sequencing in Forensic DNA Casework and Database Laboratories. Forensic Sci Int Genet 2017;28:52-70. [PMID: 28171784 DOI: 10.1016/j.fsigen.2017.01.011] [Cited by in Crossref: 160] [Cited by in F6Publishing: 134] [Article Influence: 26.7] [Reference Citation Analysis]
|
| 731 |
Cao F, Gao L, Wei L, Chen Z, Wang Y, Ran X, Meng X, Tao J. Performance Comparison of NextSeq and Ion Proton Platforms for Molecular Diagnosis of Clinical Oncology. Tumori 2017;103:223-30. [DOI: 10.5301/tj.5000600] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 732 |
Levitt B, Obala A, Langdon S, Corcoran D, O'Meara WP, Taylor SM. Overlap Extension Barcoding for the Next Generation Sequencing and Genotyping of Plasmodium falciparum in Individual Patients in Western Kenya. Sci Rep 2017;7:41108. [PMID: 28117350 DOI: 10.1038/srep41108] [Cited by in Crossref: 20] [Cited by in F6Publishing: 20] [Article Influence: 3.3] [Reference Citation Analysis]
|
| 733 |
Castelino M, Eyre S, Moat J, Fox G, Martin P, Ho P, Upton M, Barton A. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform. BMC Microbiol 2017;17:23. [PMID: 28109256 DOI: 10.1186/s12866-017-0927-4] [Cited by in Crossref: 77] [Cited by in F6Publishing: 80] [Article Influence: 12.8] [Reference Citation Analysis]
|
| 734 |
Ferretti P, Farina S, Cristofolini M, Girolomoni G, Tett A, Segata N. Experimental metagenomics and ribosomal profiling of the human skin microbiome. Exp Dermatol 2017;26:211-9. [DOI: 10.1111/exd.13210] [Cited by in Crossref: 27] [Cited by in F6Publishing: 27] [Article Influence: 4.5] [Reference Citation Analysis]
|
| 735 |
Bentley SD, Parkhill J. Genomic perspectives on the evolution and spread of bacterial pathogens. Proc Biol Sci 2015;282:20150488. [PMID: 26702036 DOI: 10.1098/rspb.2015.0488] [Cited by in Crossref: 50] [Cited by in F6Publishing: 52] [Article Influence: 8.3] [Reference Citation Analysis]
|
| 736 |
Win NN, Nakamoto S, Kanda T, Takahashi H, Takahashi-Nakaguchi A, Yasui S, Nakamura M, Wu S, Imazeki F, Mikami S, Yokosuka O, Gonoi T, Shirasawa H. Discrepancy between Hepatitis C Virus Genotypes and NS4-Based Serotypes: Association with Their Subgenomic Sequences. Int J Mol Sci 2017;18:E172. [PMID: 28106726 DOI: 10.3390/ijms18010172] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 737 |
Acharya A, Kannan S, Kumar B, Khurana J, Patil S, Tanikella G. Impact of Human Exome Sequencing on Clinical Research. Healthcare Ethics and Training 2017. [DOI: 10.4018/978-1-5225-2237-9.ch027] [Reference Citation Analysis]
|
| 738 |
Nishiguchi KM. Whole Genome Sequencing in Patients with Retinitis Pigmentosa. Essentials in Ophthalmology 2017. [DOI: 10.1007/978-4-431-56511-6_8] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 739 |
Hu Y, Lan W, Miller D. Next-Generation Sequencing for MicroRNA Expression Profile. Bioinformatics in MicroRNA Research 2017. [DOI: 10.1007/978-1-4939-7046-9_12] [Cited by in Crossref: 30] [Cited by in F6Publishing: 30] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 740 |
Borsetto C, Wellington EMH. Bioprospecting Soil Metagenomes for Antibiotics. Bioprospecting 2017. [DOI: 10.1007/978-3-319-47935-4_6] [Cited by in Crossref: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 741 |
Williams DW, Gibson G. Individualization of pubic hair bacterial communities and the effects of storage time and temperature. Forensic Science International: Genetics 2017;26:12-20. [DOI: 10.1016/j.fsigen.2016.09.006] [Cited by in Crossref: 21] [Cited by in F6Publishing: 14] [Article Influence: 3.5] [Reference Citation Analysis]
|
| 742 |
Pino A, Giunta G, Randazzo CL, Caruso S, Caggia C, Cianci A. Bacterial biota of women with bacterial vaginosis treated with lactoferrin: an open prospective randomized trial. Microb Ecol Health Dis 2017;28:1357417. [PMID: 28959181 DOI: 10.1080/16512235.2017.1357417] [Cited by in Crossref: 22] [Cited by in F6Publishing: 20] [Article Influence: 3.7] [Reference Citation Analysis]
|
| 743 |
Cotter PD, Beresford TP. Microbiome Changes During Ripening. Cheese 2017. [DOI: 10.1016/b978-0-12-417012-4.00015-6] [Cited by in Crossref: 8] [Cited by in F6Publishing: 9] [Article Influence: 1.3] [Reference Citation Analysis]
|
| 744 |
Mishra DC, Lal SB, Sharma A, Kumar S, Budhlakoti N, Rai A. Strategies and Tools for Sequencing and Assembly of Plant Genomes. Compendium of Plant Genomes 2017. [DOI: 10.1007/978-3-319-66135-3_5] [Cited by in Crossref: 3] [Article Influence: 0.5] [Reference Citation Analysis]
|
| 745 |
Katsanis S, Katsanis N. Molecular Genetic Testing and the Future of Clinical Genomics. Genomic and Precision Medicine 2017. [DOI: 10.1016/b978-0-12-800681-8.00018-9] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 746 |
Thakkar JR, Sabara PH, Koringa PG. Exploring Metagenomes Using Next-Generation Sequencing. Understanding Host-Microbiome Interactions - An Omics Approach 2017. [DOI: 10.1007/978-981-10-5050-3_3] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
|
| 747 |
Duncan D, Patel N. Next-Generation Sequencing in the Clinical Laboratory. Diagnostic Molecular Pathology 2017. [DOI: 10.1016/b978-0-12-800886-7.00003-0] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
|
| 748 |
Shen C, Shen T, Lin J. Comparative Assessment of Alignment Algorithms for NGS Data: Features, Considerations, Implementations, and Future. Algorithms for Next-Generation Sequencing Data 2017. [DOI: 10.1007/978-3-319-59826-0_9] [Reference Citation Analysis]
|
| 749 |
Bleidorn C. Sequencing Techniques. Phylogenomics 2017. [DOI: 10.1007/978-3-319-54064-1_3] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
|
| 750 |
Garonzi M, Centomo C, Delledonne M. Next Generation Sequencing for Next Generation Diagnostics and Therapy. Anticipation and Medicine 2017. [DOI: 10.1007/978-3-319-45142-8_6] [Reference Citation Analysis]
|
| 751 |
Comas I. Genomic Epidemiology of Tuberculosis. Advances in Experimental Medicine and Biology 2017. [DOI: 10.1007/978-3-319-64371-7_4] [Cited by in Crossref: 10] [Cited by in F6Publishing: 11] [Article Influence: 1.7] [Reference Citation Analysis]
|
| 752 |
Muñoz-colmenero M, Martínez JL, Roca A, Garcia-vazquez E. NGS tools for traceability in candies as high processed food products: Ion Torrent PGM versus conventional PCR-cloning. Food Chemistry 2017;214:631-6. [DOI: 10.1016/j.foodchem.2016.07.121] [Cited by in Crossref: 16] [Cited by in F6Publishing: 17] [Article Influence: 2.7] [Reference Citation Analysis]
|
| 753 |
Karaca M, Ince AG. Molecular Markers in Salvia L.: Past, Present and Future. Salvia Biotechnology 2017. [DOI: 10.1007/978-3-319-73900-7_9] [Cited by in Crossref: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 754 |
Kamenova S, Bartley T, Bohan D, Boutain J, Colautti R, Domaizon I, Fontaine C, Lemainque A, Le Viol I, Mollot G, Perga M, Ravigné V, Massol F. Invasions Toolkit. Networks of Invasion: A Synthesis of Concepts 2017. [DOI: 10.1016/bs.aecr.2016.10.009] [Cited by in Crossref: 35] [Cited by in F6Publishing: 35] [Article Influence: 5.8] [Reference Citation Analysis]
|
| 755 |
Singh RR. Next Generation Sequencing Technologies. Comprehensive Medicinal Chemistry III 2017. [DOI: 10.1016/b978-0-12-409547-2.12327-3] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
|
| 756 |
Lilya H, Andriy L. The Genetic System of Actinobacteria. Biology and Biotechnology of Actinobacteria 2017. [DOI: 10.1007/978-3-319-60339-1_5] [Reference Citation Analysis]
|
| 757 |
Chae H, Kim J, Lee GD, Jang W, Park J, Jekarl DW, Oh YS, Kim M, Kim Y. Considerations when using next-generation sequencing for genetic diagnosis of long-QT syndrome in the clinical testing laboratory. Clinica Chimica Acta 2017;464:128-35. [DOI: 10.1016/j.cca.2016.11.013] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
|
| 758 |
den Bakker HC, Strawn LK, Deng X. Bioinformatics Aspects of Foodborne Pathogen Research. Applied Genomics of Foodborne Pathogens 2017. [DOI: 10.1007/978-3-319-43751-4_4] [Reference Citation Analysis]
|
| 759 |
Ruppitsch W. Molecular typing of bacteria for epidemiological surveillance and outbreak investigation / Molekulare Typisierung von Bakterien für die epidemiologische Überwachung und Ausbruchsabklärung. Die Bodenkultur: Journal of Land Management, Food and Environment 2016;67:199-224. [DOI: 10.1515/boku-2016-0017] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 0.9] [Reference Citation Analysis]
|
| 760 |
Nayfach S, Pollard KS. Toward Accurate and Quantitative Comparative Metagenomics. Cell 2016;166:1103-16. [PMID: 27565341 DOI: 10.1016/j.cell.2016.08.007] [Cited by in Crossref: 185] [Cited by in F6Publishing: 187] [Article Influence: 26.4] [Reference Citation Analysis]
|
| 761 |
Corcoran MM, Phad GE, Vázquez Bernat N, Stahl-Hennig C, Sumida N, Persson MA, Martin M, Karlsson Hedestam GB. Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity. Nat Commun 2016;7:13642. [PMID: 27995928 DOI: 10.1038/ncomms13642] [Cited by in Crossref: 133] [Cited by in F6Publishing: 138] [Article Influence: 19.0] [Reference Citation Analysis]
|
| 762 |
Malnoy M, Viola R, Jung MH, Koo OJ, Kim S, Kim JS, Velasco R, Nagamangala Kanchiswamy C. DNA-Free Genetically Edited Grapevine and Apple Protoplast Using CRISPR/Cas9 Ribonucleoproteins. Front Plant Sci 2016;7:1904. [PMID: 28066464 DOI: 10.3389/fpls.2016.01904] [Cited by in Crossref: 362] [Cited by in F6Publishing: 382] [Article Influence: 51.7] [Reference Citation Analysis]
|
| 763 |
Brumme CJ, Poon AFY. Promises and pitfalls of Illumina sequencing for HIV resistance genotyping. Virus Res 2017;239:97-105. [PMID: 27993623 DOI: 10.1016/j.virusres.2016.12.008] [Cited by in Crossref: 22] [Cited by in F6Publishing: 23] [Article Influence: 3.1] [Reference Citation Analysis]
|
| 764 |
Asghar N, Lee YP, Nilsson E, Lindqvist R, Melik W, Kröger A, Överby AK, Johansson M. The role of the poly(A) tract in the replication and virulence of tick-borne encephalitis virus. Sci Rep 2016;6:39265. [PMID: 27982069 DOI: 10.1038/srep39265] [Cited by in Crossref: 26] [Cited by in F6Publishing: 28] [Article Influence: 3.7] [Reference Citation Analysis]
|
| 765 |
Holdsworth WL, LaPlant KE, Bell DC, Jahn MM, Mazourek M. Cultivar-Based Introgression Mapping Reveals Wild Species-Derived Pm-0, the Major Powdery Mildew Resistance Locus in Squash. PLoS One 2016;11:e0167715. [PMID: 27936008 DOI: 10.1371/journal.pone.0167715] [Cited by in Crossref: 23] [Cited by in F6Publishing: 24] [Article Influence: 3.3] [Reference Citation Analysis]
|
| 766 |
Lindberg MR, Schmedes SE, Hewitt FC, Haas JL, Ternus KL, Kadavy DR, Budowle B. A Comparison and Integration of MiSeq and MinION Platforms for Sequencing Single Source and Mixed Mitochondrial Genomes. PLoS One 2016;11:e0167600. [PMID: 27936026 DOI: 10.1371/journal.pone.0167600] [Cited by in Crossref: 30] [Cited by in F6Publishing: 29] [Article Influence: 4.3] [Reference Citation Analysis]
|
| 767 |
Rudewicz J, Soueidan H, Uricaru R, Bonnefoi H, Iggo R, Bergh J, Nikolski M. MICADo - Looking for Mutations in Targeted PacBio Cancer Data: An Alignment-Free Method. Front Genet 2016;7:214. [PMID: 28008336 DOI: 10.3389/fgene.2016.00214] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
|
| 768 |
Gonzalez-Ibeas D, Martinez-Garcia PJ, Famula RA, Delfino-Mix A, Stevens KA, Loopstra CA, Langley CH, Neale DB, Wegrzyn JL. Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). G3 (Bethesda) 2016;6:3787-802. [PMID: 27799338 DOI: 10.1534/g3.116.032805] [Cited by in Crossref: 38] [Cited by in F6Publishing: 40] [Article Influence: 5.4] [Reference Citation Analysis]
|
| 769 |
Omar A, Zhou M, Berman A, Sorrentino RA, Yar N, Weintraub NL, Kim IM, Lei W, Tang Y. Genomic-based diagnosis of arrhythmia disease in a personalized medicine era. Expert Rev Precis Med Drug Dev 2016;1:497-504. [PMID: 28944294 DOI: 10.1080/23808993.2016.1264258] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.1] [Reference Citation Analysis]
|
| 770 |
Serratì S, De Summa S, Pilato B, Petriella D, Lacalamita R, Tommasi S, Pinto R. Next-generation sequencing: advances and applications in cancer diagnosis. Onco Targets Ther 2016;9:7355-65. [PMID: 27980425 DOI: 10.2147/OTT.S99807] [Cited by in Crossref: 108] [Cited by in F6Publishing: 113] [Article Influence: 15.4] [Reference Citation Analysis]
|
| 771 |
Chaudhary S, Sharma PC. Next generation sequencing-based exploration of genomes and transcriptomes of medicinal plants. Ind J Plant Physiol 2016;21:489-503. [DOI: 10.1007/s40502-016-0258-8] [Cited by in Crossref: 6] [Cited by in F6Publishing: 1] [Article Influence: 0.9] [Reference Citation Analysis]
|
| 772 |
Lightbody G, Browne F, Huiru Zheng, Haberland V, Blayney J. The role of high performance, grid and cloud computing in high-throughput sequencing. 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2016. [DOI: 10.1109/bibm.2016.7822643] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.1] [Reference Citation Analysis]
|
| 773 |
da Fonseca RR, Albrechtsen A, Themudo GE, Ramos-madrigal J, Sibbesen JA, Maretty L, Zepeda-mendoza ML, Campos PF, Heller R, Pereira RJ. Next-generation biology: Sequencing and data analysis approaches for non-model organisms. Marine Genomics 2016;30:3-13. [DOI: 10.1016/j.margen.2016.04.012] [Cited by in Crossref: 109] [Cited by in F6Publishing: 78] [Article Influence: 15.6] [Reference Citation Analysis]
|
| 774 |
Zhang Y, Zhang Y, Burke JM, Gleitsman K, Friedrich SM, Liu KJ, Wang TH. A Simple Thermoplastic Substrate Containing Hierarchical Silica Lamellae for High-Molecular-Weight DNA Extraction. Adv Mater 2016;28:10630-6. [PMID: 27862402 DOI: 10.1002/adma.201603738] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 2.1] [Reference Citation Analysis]
|
| 775 |
Gokal J, Awolusi OO, Enitan AM, Kumari S, Bux F. Chapter 4 Molecular Characterization and Quantification of Microbial Communities in Wastewater Treatment Systems. Microbial Biotechnology 2016. [DOI: 10.1201/9781315367880-5] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.1] [Reference Citation Analysis]
|
| 776 |
Clawson ML, Murray RW, Sweeney MT, Apley MD, DeDonder KD, Capik SF, Larson RL, Lubbers BV, White BJ, Kalbfleisch TS, Schuller G, Dickey AM, Harhay GP, Heaton MP, Chitko-McKown CG, Brichta-Harhay DM, Bono JL, Smith TP. Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes. BMC Genomics 2016;17:982. [PMID: 27894259 DOI: 10.1186/s12864-016-3316-8] [Cited by in Crossref: 35] [Cited by in F6Publishing: 36] [Article Influence: 5.0] [Reference Citation Analysis]
|
| 777 |
Sobel Leonard A, McClain MT, Smith GJ, Wentworth DE, Halpin RA, Lin X, Ransier A, Stockwell TB, Das SR, Gilbert AS, Lambkin-Williams R, Ginsburg GS, Woods CW, Koelle K. Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification. J Virol 2016;90:11247-58. [PMID: 27707932 DOI: 10.1128/JVI.01657-16] [Cited by in Crossref: 82] |
