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For: Quijano-Rubio A, Yeh HW, Park J, Lee H, Langan RA, Boyken SE, Lajoie MJ, Cao L, Chow CM, Miranda MC, Wi J, Hong HJ, Stewart L, Oh BH, Baker D. De novo design of modular and tunable protein biosensors. Nature 2021;591:482-7. [PMID: 33503651 DOI: 10.1038/s41586-021-03258-z] [Cited by in Crossref: 18] [Cited by in F6Publishing: 10] [Article Influence: 18.0] [Reference Citation Analysis]
Number Citing Articles
1 Ding Q, Liu Y, Hu G, Guo L, Gao C, Chen X, Chen W, Chen J, Liu L. Engineering Escherichia coli biofilm to increase contact surface for shikimate and L-malate production. Bioresour Bioprocess 2021;8. [DOI: 10.1186/s40643-021-00470-7] [Reference Citation Analysis]
2 Koch M, Apushkinskaya N, Zolotukhina E, Silina Y. Towards hybrid one-pot/one-electrode Pd-NPs-based nanoreactors for modular biocatalysis. Biochemical Engineering Journal 2021;175:108132. [DOI: 10.1016/j.bej.2021.108132] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
3 Kang H, Wang X, Guo M, Dai C, Chen R, Yang L, Wu Y, Ying T, Zhu Z, Wei D, Liu Y, Wei D. Ultrasensitive Detection of SARS-CoV-2 Antibody by Graphene Field-Effect Transistors. Nano Lett 2021;21:7897-904. [PMID: 34581586 DOI: 10.1021/acs.nanolett.1c00837] [Reference Citation Analysis]
4 Liu K, Zhang Y, Liu K, Zhao Y, Gao B, Tao X, Zhao M, Wang F, Wei D. De novo design of a transcription factor for a progesterone biosensor. Biosensors and Bioelectronics 2022;203:113897. [DOI: 10.1016/j.bios.2021.113897] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
5 Hunt AC, Case JB, Park YJ, Cao L, Wu K, Walls AC, Liu Z, Bowen JE, Yeh HW, Saini S, Helms L, Zhao YT, Hsiang TY, Starr TN, Goreshnik I, Kozodoy L, Carter L, Ravichandran R, Green LB, Matochko WL, Thomson CA, Vögeli B, Krüger A, VanBlargan LA, Chen RE, Ying B, Bailey AL, Kafai NM, Boyken SE, Ljubetič A, Edman N, Ueda G, Chow CM, Johnson M, Addetia A, Navarro MJ, Panpradist N, Gale M Jr, Freedman BS, Bloom JD, Ruohola-Baker H, Whelan SPJ, Stewart L, Diamond MS, Veesler D, Jewett MC, Baker D. Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Sci Transl Med 2022;:eabn1252. [PMID: 35412328 DOI: 10.1126/scitranslmed.abn1252] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 5.0] [Reference Citation Analysis]
6 Ni Y, Rosier BJHM, van Aalen EA, Hanckmann ETL, Biewenga L, Pistikou AM, Timmermans B, Vu C, Roos S, Arts R, Li W, de Greef TFA, van Borren MMGJ, van Kuppeveld FJM, Bosch BJ, Merkx M. A plug-and-play platform of ratiometric bioluminescent sensors for homogeneous immunoassays. Nat Commun 2021;12:4586. [PMID: 34321486 DOI: 10.1038/s41467-021-24874-3] [Reference Citation Analysis]
7 Bogetti AT, Presti MF, Loh SN, Chong LT. The Next Frontier for Designing Switchable Proteins: Rational Enhancement of Kinetics. J Phys Chem B 2021;125:9069-77. [PMID: 34324338 DOI: 10.1021/acs.jpcb.1c04082] [Reference Citation Analysis]
8 Wang H, Fan Y, Hou Y, Chen B, Lei J, Yu S, Chen X, Hou X. Host-guest liquid gating mechanism with specific recognition interface behavior for universal quantitative chemical detection. Nat Commun 2022;13:1906. [PMID: 35393415 DOI: 10.1038/s41467-022-29549-1] [Reference Citation Analysis]
9 Chen Y, Wang F, Feng J, Fan C. Empowering single-molecule analysis with self-assembled DNA nanostructures. Matter 2021;4:3121-45. [DOI: 10.1016/j.matt.2021.08.003] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
10 Rasmi Y, Mosa OF, Alipour S, Heidari N, Javanmard F, Golchin A, Gholizadeh-ghaleh Aziz S. Significance of Cardiac Troponins as an Identification Tool in COVID-19 Patients Using Biosensors: An Update. Front Mol Biosci 2022;9:821155. [DOI: 10.3389/fmolb.2022.821155] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
11 Ferreira SS, Antunes MS. Re-engineering Plant Phenylpropanoid Metabolism With the Aid of Synthetic Biosensors. Front Plant Sci 2021;12:701385. [PMID: 34603348 DOI: 10.3389/fpls.2021.701385] [Reference Citation Analysis]
12 Hunt AC, Case JB, Park YJ, Cao L, Wu K, Walls AC, Liu Z, Bowen JE, Yeh HW, Saini S, Helms L, Zhao YT, Hsiang TY, Starr TN, Goreshnik I, Kozodoy L, Carter L, Ravichandran R, Green LB, Matochko WL, Thomson CA, Vögeli B, Krüger-Gericke A, VanBlargan LA, Chen RE, Ying B, Bailey AL, Kafai NM, Boyken S, Ljubetič A, Edman N, Ueda G, Chow C, Addetia A, Panpradist N, Gale M, Freedman BS, Lutz BR, Bloom JD, Ruohola-Baker H, Whelan SPJ, Stewart L, Diamond MS, Veesler D, Jewett MC, Baker D. Multivalent designed proteins protect against SARS-CoV-2 variants of concern. bioRxiv 2021:2021. [PMID: 34268509 DOI: 10.1101/2021.07.07.451375] [Reference Citation Analysis]
13 Piorino F, Patterson AT, Styczynski MP. Low-cost, point-of-care biomarker quantification. Current Opinion in Biotechnology 2022;76:102738. [DOI: 10.1016/j.copbio.2022.102738] [Reference Citation Analysis]
14 Baek K, Ji K, Peng W, Liyanaarachchi SM, Dodani SC. The design and evolution of fluorescent protein-based sensors for monoatomic ions in biology. Protein Eng Des Sel 2021;34:gzab023. [PMID: 34581820 DOI: 10.1093/protein/gzab023] [Reference Citation Analysis]
15 Löhr T, Sormanni P, Vendruscolo M. Conformational Entropy as a Potential Liability of Computationally Designed Antibodies. Biomolecules 2022;12:718. [DOI: 10.3390/biom12050718] [Reference Citation Analysis]
16 Pan J, He Y, Liu Z, Chen J. Tetrahedron-Based Constitutional Dynamic Network for COVID-19 or Other Coronaviruses Diagnostics and Its Logic Gate Applications. Anal Chem 2021. [PMID: 34935362 DOI: 10.1021/acs.analchem.1c03051] [Reference Citation Analysis]
17 Guo Z, Parakra RD, Xiong Y, Johnston WA, Walden P, Edwardraja S, Moradi SV, Ungerer JPJ, Ai HW, Phillips JJ, Alexandrov K. Engineering and exploiting synthetic allostery of NanoLuc luciferase. Nat Commun 2022;13:789. [PMID: 35145068 DOI: 10.1038/s41467-022-28425-2] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 4.0] [Reference Citation Analysis]
18 ElGamacy M, Hernandez Alvarez B. Expanding the versatility of natural and de novo designed coiled coils and helical bundles. Curr Opin Struct Biol 2021;68:224-34. [PMID: 33964630 DOI: 10.1016/j.sbi.2021.03.011] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
19 Alberstein RG, Guo AB, Kortemme T. Design principles of protein switches. Curr Opin Struct Biol 2021;72:71-8. [PMID: 34537489 DOI: 10.1016/j.sbi.2021.08.004] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 8.0] [Reference Citation Analysis]
20 Zhang JZ, Yeh HW, Walls AC, Wicky BIM, Sprouse KR, VanBlargan LA, Treger R, Quijano-Rubio A, Pham MN, Kraft JC, Haydon IC, Yang W, DeWitt M, Bowen JE, Chow CM, Carter L, Ravichandran R, Wener MH, Stewart L, Veesler D, Diamond MS, Greninger AL, Koelle DM, Baker D. Thermodynamically coupled biosensors for detecting neutralizing antibodies against SARS-CoV-2 variants. Nat Biotechnol 2022. [PMID: 35484405 DOI: 10.1038/s41587-022-01280-8] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
21 Zubi YS, Seki K, Li Y, Hunt AC, Liu B, Roux B, Jewett MC, Lewis JC. Metal-responsive regulation of enzyme catalysis using genetically encoded chemical switches. Nat Commun 2022;13:1864. [PMID: 35387988 DOI: 10.1038/s41467-022-29239-y] [Reference Citation Analysis]
22 Zhu Z, Song H, Wang Y, Zhang YP. Protein engineering for electrochemical biosensors. Curr Opin Biotechnol 2022;76:102751. [PMID: 35777077 DOI: 10.1016/j.copbio.2022.102751] [Reference Citation Analysis]
23 Vorobieva AA. Principles and Methods in Computational Membrane Protein Design. J Mol Biol 2021;:167154. [PMID: 34271008 DOI: 10.1016/j.jmb.2021.167154] [Reference Citation Analysis]
24 Lemon CM, Nissley AJ, Latorraca NR, Wittenborn EC, Marletta MA. Corrole–protein interactions in H-NOX and HasA. RSC Chem Biol . [DOI: 10.1039/d2cb00004k] [Reference Citation Analysis]
25 Kuscu M, Akan OB. Detection in molecular communications with ligand receptors under molecular interference. Digital Signal Processing 2022;124:103186. [DOI: 10.1016/j.dsp.2021.103186] [Reference Citation Analysis]
26 Marchand A, Van Hall-beauvais AK, Correia BE. Computational design of novel protein–protein interactions – An overview on methodological approaches and applications. Current Opinion in Structural Biology 2022;74:102370. [DOI: 10.1016/j.sbi.2022.102370] [Reference Citation Analysis]
27 Gallup O, Ming H, Ellis T. Ten future challenges for synthetic biology. Eng biol 2021;5:51-9. [DOI: 10.1049/enb2.12011] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 4.0] [Reference Citation Analysis]
28 Ng KK, Reinert ZE, Corver J, Resurreccion D, Hensbergen PJ, Prescher JA. A Bioluminescent Sensor for Rapid Detection of PPEP-1, a Clostridioides difficile Biomarker. Sensors (Basel) 2021;21:7485. [PMID: 34833562 DOI: 10.3390/s21227485] [Reference Citation Analysis]
29 Sahu S, Roy R, Anand R. Harnessing the Potential of Biological Recognition Elements for Water Pollution Monitoring. ACS Sens 2022;7:704-15. [PMID: 35275620 DOI: 10.1021/acssensors.1c02579] [Reference Citation Analysis]
30 Zhang JZ, Yeh HW, Walls AC, Wicky BIM, Sprouse K, VanBlargan LA, Treger R, Quijano-Rubio A, Pham MN, Kraft JC, Haydon IC, Yang W, DeWitt M, Chow C, Carter L, Wener MH, Stewart L, Veesler D, Diamond MS, Baker D. Detection of antibodies neutralizing historical and emerging SARS-CoV-2 strains using a thermodynamically coupled de novo biosensor system. bioRxiv 2021:2021. [PMID: 34189528 DOI: 10.1101/2021.06.22.449355] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
31 Wang L, Wang X, Wu Y, Guo M, Gu C, Dai C, Kong D, Wang Y, Zhang C, Qu D, Fan C, Xie Y, Zhu Z, Liu Y, Wei D. Rapid and ultrasensitive electromechanical detection of ions, biomolecules and SARS-CoV-2 RNA in unamplified samples. Nat Biomed Eng. [DOI: 10.1038/s41551-021-00833-7] [Cited by in Crossref: 8] [Cited by in F6Publishing: 3] [Article Influence: 8.0] [Reference Citation Analysis]
32 Cheung NJ, John Peter AT, Kornmann B. Leri: A web-server for identifying protein functional networks from evolutionary couplings. Comput Struct Biotechnol J 2021;19:3556-63. [PMID: 34257835 DOI: 10.1016/j.csbj.2021.06.002] [Cited by in Crossref: 2] [Article Influence: 2.0] [Reference Citation Analysis]
33 Li J, Wang J, Zhang W, Tu Z, Cai X, Wang Y, Gan C, Deng H, Cui J, Shu Z, Long Q, Chen J, Tang N, Hu X, Huang A, Hu J. Protein sensors combining both on-and-off model for antibody homogeneous assay. Biosensors and Bioelectronics 2022;209:114226. [DOI: 10.1016/j.bios.2022.114226] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
34 Guo Z, Smutok O, Johnston WA, Ayva CE, Walden P, Mcwhinney B, Ungerer JPJ, Melman A, Katz E, Alexandrov K. Circular Permutated PQQ‐Glucose Dehydrogenase as an Ultrasensitive Electrochemical Biosensor. Angewandte Chemie. [DOI: 10.1002/ange.202109005] [Reference Citation Analysis]
35 Li H, Zhang Y, Huang Y, Cao D, Wang S. Dissolution-enhanced emission of 1,3,6,8-tetrakis( p -benzoic acid)pyrene for selectively detecting protamine and “on-to-on” heparin detection in water. New J Chem 2021;46:345-51. [DOI: 10.1039/d1nj03946f] [Reference Citation Analysis]
36 Wu T, Chen Z, Guo S, Zhang C, Huo YX. Engineering Transcription Factor BmoR Mutants for Constructing Multifunctional Alcohol Biosensors. ACS Synth Biol 2022;11:1251-60. [PMID: 35175734 DOI: 10.1021/acssynbio.1c00549] [Reference Citation Analysis]
37 Qin L, Liu X, Xu K, Li C. Mining and design of biosensors for engineering microbial cell factory. Current Opinion in Biotechnology 2022;75:102694. [DOI: 10.1016/j.copbio.2022.102694] [Reference Citation Analysis]
38 Hossain MS, Zhang Z, Ashok S, Jenks AR, Lynch CJ, Hougland JL, Mozhdehi D. Temperature-Responsive Nano-Biomaterials from Genetically Encoded Farnesylated Disordered Proteins. ACS Appl Bio Mater 2022. [PMID: 35044146 DOI: 10.1021/acsabm.1c01162] [Reference Citation Analysis]
39 Merkx M. Computational Design of Sensor Proteins; It May Actually Work. ACS Sens 2021;6:2783-4. [PMID: 34445871 DOI: 10.1021/acssensors.1c01482] [Reference Citation Analysis]
40 La Gatta S, Leone L, Maglio O, De Fenza M, Nastri F, Pavone V, Chino M, Lombardi A. Unravelling the Structure of the Tetrahedral Metal-Binding Site in METP3 through an Experimental and Computational Approach. Molecules 2021;26:5221. [PMID: 34500655 DOI: 10.3390/molecules26175221] [Reference Citation Analysis]
41 Wang X, Li F, Qiu W, Xu B, Li Y, Lian X, Yu H, Zhang Z, Wang J, Li Z, Xue W, Zhu F. SYNBIP: synthetic binding proteins for research, diagnosis and therapy. Nucleic Acids Res 2021:gkab926. [PMID: 34664670 DOI: 10.1093/nar/gkab926] [Reference Citation Analysis]