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For: Hayes S, Mahony J, Nauta A, van Sinderen D. Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches. Viruses 2017;9:E127. [PMID: 28538703 DOI: 10.3390/v9060127] [Cited by in Crossref: 63] [Cited by in F6Publishing: 51] [Article Influence: 12.6] [Reference Citation Analysis]
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7 Culley A. New insight into the RNA aquatic virosphere via viromics. Virus Res 2018;244:84-9. [PMID: 29138044 DOI: 10.1016/j.virusres.2017.11.008] [Cited by in Crossref: 19] [Cited by in F6Publishing: 12] [Article Influence: 3.8] [Reference Citation Analysis]
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11 Townsend EM, Kelly L, Muscatt G, Box JD, Hargraves N, Lilley D, Jameson E. The Human Gut Phageome: Origins and Roles in the Human Gut Microbiome. Front Cell Infect Microbiol 2021;11:643214. [PMID: 34150671 DOI: 10.3389/fcimb.2021.643214] [Reference Citation Analysis]
12 Forde A, Hill C. Phages of life - the path to pharma. Br J Pharmacol 2018;175:412-8. [PMID: 29266197 DOI: 10.1111/bph.14106] [Cited by in Crossref: 18] [Cited by in F6Publishing: 18] [Article Influence: 4.5] [Reference Citation Analysis]
13 Martínez A, Kuraji R, Kapila YL. The human oral virome: Shedding light on the dark matter. Periodontol 2000 2021;87:282-98. [PMID: 34463988 DOI: 10.1111/prd.12396] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
14 Garretto A, Miller-Ensminger T, Wolfe AJ, Putonti C. Bacteriophages of the lower urinary tract. Nat Rev Urol 2019;16:422-32. [PMID: 31073244 DOI: 10.1038/s41585-019-0192-4] [Cited by in Crossref: 20] [Cited by in F6Publishing: 17] [Article Influence: 10.0] [Reference Citation Analysis]
15 López-Pérez M, Haro-Moreno JM, Gonzalez-Serrano R, Parras-Moltó M, Rodriguez-Valera F. Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters. PLoS Genet 2017;13:e1007018. [PMID: 28945750 DOI: 10.1371/journal.pgen.1007018] [Cited by in Crossref: 46] [Cited by in F6Publishing: 33] [Article Influence: 9.2] [Reference Citation Analysis]
16 Fang Z, Zhou H. VirionFinder: Identification of Complete and Partial Prokaryote Virus Virion Protein From Virome Data Using the Sequence and Biochemical Properties of Amino Acids. Front Microbiol 2021;12:615711. [PMID: 33613485 DOI: 10.3389/fmicb.2021.615711] [Reference Citation Analysis]
17 Ramos-Barbero MD, Viver T, Zabaleta A, Senel E, Gomariz M, Antigüedad I, Santos F, Martínez-García M, Rosselló-Móra R, Antón J. Ancient saltern metagenomics: tracking changes in microbes and their viruses from the underground to the surface. Environ Microbiol 2021;23:3477-98. [PMID: 34110059 DOI: 10.1111/1462-2920.15630] [Reference Citation Analysis]
18 Ragunathan PT, Vanderpool CK. Cryptic-Prophage-Encoded Small Protein DicB Protects Escherichia coli from Phage Infection by Inhibiting Inner Membrane Receptor Proteins. J Bacteriol 2019;201:e00475-19. [PMID: 31527115 DOI: 10.1128/JB.00475-19] [Cited by in Crossref: 17] [Cited by in F6Publishing: 5] [Article Influence: 5.7] [Reference Citation Analysis]
19 Ding W, Nayak J, Swapnarekha H, Abraham A, Naik B, Pelusi D. Fusion of intelligent learning for COVID-19: A state-of-the-art review and analysis on real medical data. Neurocomputing 2021;457:40-66. [PMID: 34149184 DOI: 10.1016/j.neucom.2021.06.024] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
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21 Dolja VV, Koonin EV. Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer. Virus Res 2018;244:36-52. [PMID: 29103997 DOI: 10.1016/j.virusres.2017.10.020] [Cited by in Crossref: 99] [Cited by in F6Publishing: 75] [Article Influence: 19.8] [Reference Citation Analysis]
22 Ledormand P, Desmasures N, Dalmasso M. Phage community involvement in fermented beverages: an open door to technological advances? Crit Rev Food Sci Nutr 2020;:1-10. [PMID: 32649837 DOI: 10.1080/10408398.2020.1790497] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
23 Rohde C, Wittmann J. Phage Diversity for Research and Application. Antibiotics (Basel) 2020;9:E734. [PMID: 33114578 DOI: 10.3390/antibiotics9110734] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
24 Jin T, Yin J. Patterns of virus growth across the diversity of life. Integr Biol (Camb) 2021;13:44-59. [PMID: 33616184 DOI: 10.1093/intbio/zyab001] [Reference Citation Analysis]
25 Habibzadeh P, Mofatteh M, Silawi M, Ghavami S, Faghihi MA. Molecular diagnostic assays for COVID-19: an overview. Crit Rev Clin Lab Sci 2021;58:385-98. [PMID: 33595397 DOI: 10.1080/10408363.2021.1884640] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
26 Parras-Moltó M, Rodríguez-Galet A, Suárez-Rodríguez P, López-Bueno A. Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses. Microbiome 2018;6:119. [PMID: 29954453 DOI: 10.1186/s40168-018-0507-3] [Cited by in Crossref: 34] [Cited by in F6Publishing: 29] [Article Influence: 8.5] [Reference Citation Analysis]
27 Trubl G, Jang HB, Roux S, Emerson JB, Solonenko N, Vik DR, Solden L, Ellenbogen J, Runyon AT, Bolduc B, Woodcroft BJ, Saleska SR, Tyson GW, Wrighton KC, Sullivan MB, Rich VI. Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing. mSystems 2018;3:e00076-18. [PMID: 30320215 DOI: 10.1128/mSystems.00076-18] [Cited by in Crossref: 67] [Cited by in F6Publishing: 38] [Article Influence: 16.8] [Reference Citation Analysis]
28 Islam MR, Martinez-Soto CE, Lin JT, Khursigara CM, Barbut S, Anany H. A systematic review from basics to omics on bacteriophage applications in poultry production and processing. Crit Rev Food Sci Nutr 2021;:1-33. [PMID: 34609270 DOI: 10.1080/10408398.2021.1984200] [Reference Citation Analysis]
29 Castelán-Sánchez HG, Lopéz-Rosas I, García-Suastegui WA, Peralta R, Dobson ADW, Batista-García RA, Dávila-Ramos S. Extremophile deep-sea viral communities from hydrothermal vents: Structural and functional analysis. Mar Genomics 2019;46:16-28. [PMID: 30857856 DOI: 10.1016/j.margen.2019.03.001] [Cited by in Crossref: 12] [Cited by in F6Publishing: 11] [Article Influence: 4.0] [Reference Citation Analysis]
30 Bacharouche J, Erdemli O, Rivet R, Doucouré B, Caillet C, Mutschler A, Lavalle P, Duval JF, Gantzer C, Francius G. On the Infectivity of Bacteriophages in Polyelectrolyte Multilayer Films: Inhibition or Preservation of Their Bacteriolytic Activity? ACS Appl Mater Interfaces 2018;10:33545-55. [DOI: 10.1021/acsami.8b10424] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
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32 Kumar N, Gupta AK, Sudan SK, Pal D, Randhawa V, Sahni G, Mayilraj S, Kumar M. Abundance and Diversity of Phages, Microbial Taxa, and Antibiotic Resistance Genes in the Sediments of the River Ganges Through Metagenomic Approach. Microb Drug Resist 2021. [PMID: 33913739 DOI: 10.1089/mdr.2020.0431] [Reference Citation Analysis]
33 Garretto A, Hatzopoulos T, Putonti C. virMine: automated detection of viral sequences from complex metagenomic samples. PeerJ 2019;7:e6695. [PMID: 30993039 DOI: 10.7717/peerj.6695] [Cited by in Crossref: 20] [Cited by in F6Publishing: 14] [Article Influence: 6.7] [Reference Citation Analysis]
34 Zrelovs N, Dislers A, Kazaks A. Motley Crew: Overview of the Currently Available Phage Diversity. Front Microbiol 2020;11:579452. [PMID: 33193205 DOI: 10.3389/fmicb.2020.579452] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
35 Philipson CW, Voegtly LJ, Lueder MR, Long KA, Rice GK, Frey KG, Biswas B, Cer RZ, Hamilton T, Bishop-Lilly KA. Characterizing Phage Genomes for Therapeutic Applications. Viruses 2018;10:E188. [PMID: 29642590 DOI: 10.3390/v10040188] [Cited by in Crossref: 60] [Cited by in F6Publishing: 45] [Article Influence: 15.0] [Reference Citation Analysis]
36 Dávila-Ramos S, Castelán-Sánchez HG, Martínez-Ávila L, Sánchez-Carbente MDR, Peralta R, Hernández-Mendoza A, Dobson ADW, Gonzalez RA, Pastor N, Batista-García RA. A Review on Viral Metagenomics in Extreme Environments. Front Microbiol 2019;10:2403. [PMID: 31749771 DOI: 10.3389/fmicb.2019.02403] [Cited by in Crossref: 27] [Cited by in F6Publishing: 18] [Article Influence: 9.0] [Reference Citation Analysis]
37 Castro-mejía JL, Deng L, Vogensen FK, Reyes A, Nielsen DS. Extraction and Purification of Viruses from Fecal Samples for Metagenome and Morphology Analyses. In: Moya A, Pérez Brocal V, editors. The Human Virome. New York: Springer; 2018. pp. 49-57. [DOI: 10.1007/978-1-4939-8682-8_5] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
38 Lafferty KD, Garcia-Vedrenne AE, McLaughlin JP, Childress JN, Morse MF, Jerde CL. At Palmyra Atoll, the fish-community environmental DNA signal changes across habitats but not with tides. J Fish Biol 2021;98:415-25. [PMID: 32441343 DOI: 10.1111/jfb.14403] [Cited by in Crossref: 10] [Cited by in F6Publishing: 5] [Article Influence: 5.0] [Reference Citation Analysis]
39 Maske BL, de Melo Pereira GV, da Silva Vale A, Marques Souza DS, De Dea Lindner J, Soccol CR. Viruses in fermented foods: are they good or bad? Two sides of the same coin. Food Microbiol 2021;98:103794. [PMID: 33875222 DOI: 10.1016/j.fm.2021.103794] [Reference Citation Analysis]
40 Yan A, Butcher J, Mack D, Stintzi A. Virome Sequencing of the Human Intestinal Mucosal-Luminal Interface. Front Cell Infect Microbiol 2020;10:582187. [PMID: 33194818 DOI: 10.3389/fcimb.2020.582187] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
41 Michán C, Blasco J, Alhama J. High-throughput molecular analyses of microbiomes as a tool to monitor the wellbeing of aquatic environments. Microb Biotechnol 2021;14:870-85. [PMID: 33559398 DOI: 10.1111/1751-7915.13763] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
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44 Alsaadi A, Beamud B, Easwaran M, Abdelrahman F, El-Shibiny A, Alghoribi MF, Domingo-Calap P. Learning From Mistakes: The Role of Phages in Pandemics. Front Microbiol 2021;12:653107. [PMID: 33815346 DOI: 10.3389/fmicb.2021.653107] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
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46 Fang Z, Tan J, Wu S, Li M, Xu C, Xie Z, Zhu H. PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning. Gigascience 2019;8:giz066. [PMID: 31220250 DOI: 10.1093/gigascience/giz066] [Cited by in Crossref: 34] [Cited by in F6Publishing: 23] [Article Influence: 17.0] [Reference Citation Analysis]
47 Sidhu C, Vikram S, Pinnaka AK. Unraveling the Microbial Interactions and Metabolic Potentials in Pre- and Post-treated Sludge from a Wastewater Treatment Plant Using Metagenomic Studies. Front Microbiol 2017;8:1382. [PMID: 28769920 DOI: 10.3389/fmicb.2017.01382] [Cited by in Crossref: 15] [Cited by in F6Publishing: 6] [Article Influence: 3.0] [Reference Citation Analysis]
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49 Ye M, Sun M, Huang D, Zhang Z, Zhang H, Zhang S, Hu F, Jiang X, Jiao W. A review of bacteriophage therapy for pathogenic bacteria inactivation in the soil environment. Environ Int 2019;129:488-96. [PMID: 31158595 DOI: 10.1016/j.envint.2019.05.062] [Cited by in Crossref: 19] [Cited by in F6Publishing: 13] [Article Influence: 6.3] [Reference Citation Analysis]
50 Osunmakinde CO, Selvarajan R, Sibanda T, Mamba BB, Msagati TAM. Overview of Trends in the Application of Metagenomic Techniques in the Analysis of Human Enteric Viral Diversity in Africa's Environmental Regimes. Viruses 2018;10:E429. [PMID: 30110939 DOI: 10.3390/v10080429] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
51 Runa V, Wenk J, Bengtsson S, Jones BV, Lanham AB. Bacteriophages in Biological Wastewater Treatment Systems: Occurrence, Characterization, and Function. Front Microbiol 2021;12:730071. [PMID: 34803947 DOI: 10.3389/fmicb.2021.730071] [Reference Citation Analysis]
52 Zrelovs N, Cernooka E, Dislers A, Kazaks A. Isolation and characterization of the novel Virgibacillus-infecting bacteriophage Mimir87. Arch Virol 2020;165:737-41. [PMID: 31875246 DOI: 10.1007/s00705-019-04516-2] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.7] [Reference Citation Analysis]
53 Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, Ventura M. Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX. Microbiome 2018;6:145. [PMID: 30126456 DOI: 10.1186/s40168-018-0527-z] [Cited by in Crossref: 29] [Cited by in F6Publishing: 27] [Article Influence: 7.3] [Reference Citation Analysis]
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