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For: Bbosa N, Ssemwanga D, Ssekagiri A, Xi X, Mayanja Y, Bahemuka U, Seeley J, Pillay D, Abeler-Dörner L, Golubchik T, Fraser C, Kaleebu P, Ratmann O. Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda. Viruses 2020;12:E331. [PMID: 32197553 DOI: 10.3390/v12030331] [Cited by in Crossref: 6] [Cited by in F6Publishing: 9] [Article Influence: 3.0] [Reference Citation Analysis]
Number Citing Articles
1 Pujol-Hodge E, Salazar-Gonzalez JF, Ssemwanga D, Charlebois ED, Ayieko J, Grant HE, Liegler T, Atkins KE, Kaleebu P, Kamya MR, Petersen M, Havlir DV, Leigh Brown AJ. Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. Viruses 2022;14:1673. [PMID: 36016295 DOI: 10.3390/v14081673] [Reference Citation Analysis]
2 Xi X, Spencer SEF, Hall M, Grabowski MK, Kagaayi J, Ratmann O; Rakai Health Sciences Program and PANGEA‐HIV. Inferring the sources of HIV infection in Africa from deep‐sequence data with semi‐parametric Bayesian Poisson flow models. Royal Stata Society Series C. [DOI: 10.1111/rssc.12544] [Reference Citation Analysis]
3 Duault H, Durand B, Canini L. Methods Combining Genomic and Epidemiological Data in the Reconstruction of Transmission Trees: A Systematic Review. Pathogens 2022;11:252. [DOI: 10.3390/pathogens11020252] [Reference Citation Analysis]
4 Kayondo HW, Ssekagiri A, Nabakooza G, Bbosa N, Ssemwanga D, Kaleebu P, Mwalili S, Mango JM, Leigh Brown AJ, Saenz RA, Galiwango R, Kitayimbwa JM. Employing phylogenetic tree shape statistics to resolve the underlying host population structure. BMC Bioinformatics 2021;22:546. [PMID: 34758743 DOI: 10.1186/s12859-021-04465-1] [Reference Citation Analysis]
5 Campbell EM, Boyles A, Shankar A, Kim J, Knyazev S, Cintron R, Switzer WM. MicrobeTrace: Retooling molecular epidemiology for rapid public health response. PLoS Comput Biol 2021;17:e1009300. [PMID: 34492010 DOI: 10.1371/journal.pcbi.1009300] [Cited by in Crossref: 2] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
6 Bbosa N, Ssemwanga D, Nsubuga RN, Kiwanuka N, Bagaya BS, Kitayimbwa JM, Ssekagiri A, Yebra G, Kaleebu P, Leigh-Brown A. Phylogenetic Networks and Parameters Inferred from HIV Nucleotide Sequences of High-Risk and General Population Groups in Uganda: Implications for Epidemic Control. Viruses 2021;13:970. [PMID: 34073846 DOI: 10.3390/v13060970] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
7 Reichmuth ML, Chaudron SE, Bachmann N, Nguyen H, Böni J, Metzner KJ, Perreau M, Klimkait T, Yerly S, Hirsch HH, Hauser C, Ramette A, Vernazza P, Cavassini M, Bernasconi E, Günthard HF, Kusejko K, Kouyos RD; Swiss HIV Cohort Study. Using longitudinally sampled viral nucleotide sequences to characterize the drivers of HIV-1 transmission. HIV Med 2021;22:346-59. [PMID: 33368946 DOI: 10.1111/hiv.13030] [Reference Citation Analysis]
8 Ssemwanga D, Bbosa N, Nsubuga RN, Ssekagiri A, Kapaata A, Nannyonjo M, Nassolo F, Karabarinde A, Mugisha J, Seeley J, Yebra G, Leigh Brown A, Kaleebu P. The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda. Viruses 2020;12:E1283. [PMID: 33182587 DOI: 10.3390/v12111283] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
9 Novitsky V, Steingrimsson JA, Howison M, Gillani FS, Li Y, Manne A, Fulton J, Spence M, Parillo Z, Marak T, Chan PA, Bertrand T, Bandy U, Alexander-Scott N, Dunn CW, Hogan J, Kantor R. Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters. Sci Rep 2020;10:18547. [PMID: 33122765 DOI: 10.1038/s41598-020-75560-1] [Cited by in Crossref: 4] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]