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For: Bartas M, Brázda V, Bohálová N, Cantara A, Volná A, Stachurová T, Malachová K, Jagelská EB, Porubiaková O, Červeň J, Pečinka P. In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles. Front Microbiol 2020;11:1583. [PMID: 32719673 DOI: 10.3389/fmicb.2020.01583] [Cited by in Crossref: 20] [Cited by in F6Publishing: 33] [Article Influence: 10.0] [Reference Citation Analysis]
Number Citing Articles
1 Taghipour A, Heidarzadeh H. Design and Analysis of Highly Sensitive LSPR-Based Metal–Insulator–Metal Nano-Discs as a Biosensor for Fast Detection of SARS-CoV-2. Photonics 2022;9:542. [DOI: 10.3390/photonics9080542] [Reference Citation Analysis]
2 Zhai LY, Liu JF, Zhao JJ, Su AM, Xi XG, Hou XM. Targeting the RNA G-Quadruplex and Protein Interactome for Antiviral Therapy. J Med Chem 2022. [PMID: 35862260 DOI: 10.1021/acs.jmedchem.2c00649] [Reference Citation Analysis]
3 Bowater RP, Bohálová N, Brázda V. Interaction of Proteins with Inverted Repeats and Cruciform Structures in Nucleic Acids. IJMS 2022;23:6171. [DOI: 10.3390/ijms23116171] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
4 Abas AH, Tallei TE, Fatimawali F, Celik I, Alhumaydhi FA, Emran TB, Dhama K, Rabaan AA, Garout MA, Halwani MA, Al Mutair A, Alhumaid S, Harapan H. 4’-fluorouridine and its derivatives as potential COVID-19 oral drugs: a review. F1000Res 2022;11:410. [DOI: 10.12688/f1000research.109701.1] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
5 Cantara A, Luo Y, Dobrovolná M, Bohalova N, Fojta M, Verga D, Guittat L, Cucchiarini A, Savrimoutou S, Häberli C, Guillon J, Keiser J, Brázda V, Mergny JL. G-quadruplexes in helminth parasites. Nucleic Acids Res 2022:gkac129. [PMID: 35234933 DOI: 10.1093/nar/gkac129] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
6 Mendes E, Aljnadi IM, Bahls B, Victor BL, Paulo A. Major Achievements in the Design of Quadruplex-Interactive Small Molecules. Pharmaceuticals 2022;15:300. [DOI: 10.3390/ph15030300] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
7 Ghosh N, Saha I, Plewczynski D. Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1. IEEE Access 2022;10:23708-15. [DOI: 10.1109/access.2022.3154053] [Reference Citation Analysis]
8 Xu J, Huang H, Zhou X. G-Quadruplexes in Neurobiology and Virology: Functional Roles and Potential Therapeutic Approaches. JACS Au 2021;1:2146-61. [PMID: 34977886 DOI: 10.1021/jacsau.1c00451] [Cited by in Crossref: 1] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
9 Emrani J, Ahmed M, Jeffers-Francis L, Teleha JC, Mowa N, Newman RH, Thomas MD. SARS-COV-2, infection, transmission, transcription, translation, proteins, and treatment: A review. Int J Biol Macromol 2021;193:1249-73. [PMID: 34756970 DOI: 10.1016/j.ijbiomac.2021.10.172] [Cited by in Crossref: 1] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
10 Yin C, Yau SS. Inverted repeats in coronavirus SARS-CoV-2 genome manifest the evolution events. J Theor Biol 2021;530:110885. [PMID: 34478743 DOI: 10.1016/j.jtbi.2021.110885] [Reference Citation Analysis]
11 Scalabrin M, Nadai M, Tassinari M, Lago S, Doria F, Frasson I, Freccero M, Richter SN. Selective Recognition of a Single HIV-1 G-Quadruplex by Ultrafast Small-Molecule Screening. Anal Chem 2021;93:15243-52. [PMID: 34762806 DOI: 10.1021/acs.analchem.0c04106] [Reference Citation Analysis]
12 Zekri AN, Bahnasy AA, Hafez MM, Hassan ZK, Ahmed OS, Soliman HK, El-Sisi ER, Dine MHSE, Solimane MS, Latife LSA, Seadawy MG, Elsafty AS, Abouelhoda M. Characterization of the SARS-CoV-2 genomes in Egypt in first and second waves of infection. Sci Rep 2021;11:21632. [PMID: 34732835 DOI: 10.1038/s41598-021-99014-4] [Cited by in F6Publishing: 5] [Reference Citation Analysis]
13 Li Z, Qian SH, Wang F, Mohamed HI, Yang G, Chen ZX, Wei D. G-quadruplexes in genomes of viruses infecting eukaryotes or prokaryotes are under different selection pressures from hosts. J Genet Genomics 2021:S1673-8527(21)00316-7. [PMID: 34601118 DOI: 10.1016/j.jgg.2021.08.018] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
14 Volná A, Bartas M, Nezval J, Špunda V, Pečinka P, Červeň J. Searching for G-Quadruplex-Binding Proteins in Plants: New Insight into Possible G-Quadruplex Regulation. BioTech 2021;10:20. [DOI: 10.3390/biotech10040020] [Reference Citation Analysis]
15 Ahmad B, Batool M, Ain QU, Kim MS, Choi S. Exploring the Binding Mechanism of PF-07321332 SARS-CoV-2 Protease Inhibitor through Molecular Dynamics and Binding Free Energy Simulations. Int J Mol Sci 2021;22:9124. [PMID: 34502033 DOI: 10.3390/ijms22179124] [Cited by in F6Publishing: 28] [Reference Citation Analysis]
16 Lavigne M, Helynck O, Rigolet P, Boudria-Souilah R, Nowakowski M, Baron B, Brülé S, Hoos S, Raynal B, Guittat L, Beauvineau C, Petres S, Granzhan A, Guillon J, Pratviel G, Teulade-Fichou MP, England P, Mergny JL, Munier-Lehmann H. SARS-CoV-2 Nsp3 unique domain SUD interacts with guanine quadruplexes and G4-ligands inhibit this interaction. Nucleic Acids Res 2021;49:7695-712. [PMID: 34232992 DOI: 10.1093/nar/gkab571] [Cited by in F6Publishing: 11] [Reference Citation Analysis]
17 Volná A, Bartas M, Karlický V, Nezval J, Kundrátová K, Pečinka P, Špunda V, Červeň J. G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story. Int J Mol Sci 2021;22:7381. [PMID: 34299001 DOI: 10.3390/ijms22147381] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
18 Belmonte-Reche E, Serrano-Chacón I, Gonzalez C, Gallo J, Bañobre-López M. Potential G-quadruplexes and i-Motifs in the SARS-CoV-2. PLoS One 2021;16:e0250654. [PMID: 34101725 DOI: 10.1371/journal.pone.0250654] [Cited by in F6Publishing: 8] [Reference Citation Analysis]
19 Tomaszewska M, Szabat M, Zielińska K, Kierzek R. Identification and Structural Aspects of G-Quadruplex-Forming Sequences from the Influenza A Virus Genome. Int J Mol Sci 2021;22:6031. [PMID: 34199658 DOI: 10.3390/ijms22116031] [Cited by in F6Publishing: 3] [Reference Citation Analysis]
20 Abiri A, Lavigne M, Rezaei M, Nikzad S, Zare P, Mergny JL, Rahimi HR. Unlocking G-Quadruplexes as Antiviral Targets. Pharmacol Rev 2021;73:897-923. [PMID: 34045305 DOI: 10.1124/pharmrev.120.000230] [Cited by in Crossref: 4] [Cited by in F6Publishing: 20] [Article Influence: 4.0] [Reference Citation Analysis]
21 Warner EF, Bohálová N, Brázda V, Waller ZAE, Bidula S. Analysis of putative quadruplex-forming sequences in fungal genomes: novel antifungal targets? Microb Genom 2021;7. [PMID: 33956596 DOI: 10.1099/mgen.0.000570] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
22 Goswami P, Bartas M, Lexa M, Bohálová N, Volná A, Červeň J, Červeňová V, Pečinka P, Špunda V, Fojta M, Brázda V. SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci. Brief Bioinform 2021;22:1338-45. [PMID: 33341900 DOI: 10.1093/bib/bbaa385] [Cited by in Crossref: 4] [Cited by in F6Publishing: 8] [Article Influence: 4.0] [Reference Citation Analysis]
23 Bohálová N, Cantara A, Bartas M, Kaura P, Šťastný J, Pečinka P, Fojta M, Mergny JL, Brázda V. Analyses of viral genomes for G-quadruplex forming sequences reveal their correlation with the type of infection. Biochimie 2021;186:13-27. [PMID: 33839192 DOI: 10.1016/j.biochi.2021.03.017] [Cited by in Crossref: 3] [Cited by in F6Publishing: 15] [Article Influence: 3.0] [Reference Citation Analysis]
24 Bohálová N, Cantara A, Bartas M, Kaura P, Šťastný J, Pečinka P, Fojta M, Brázda V. Tracing dsDNA Virus-Host Coevolution through Correlation of Their G-Quadruplex-Forming Sequences. Int J Mol Sci 2021;22:3433. [PMID: 33810462 DOI: 10.3390/ijms22073433] [Cited by in Crossref: 1] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
25 Bezzi G, Piga EJ, Binolfi A, Armas P. CNBP Binds and Unfolds In Vitro G-Quadruplexes Formed in the SARS-CoV-2 Positive and Negative Genome Strands. Int J Mol Sci 2021;22:2614. [PMID: 33807682 DOI: 10.3390/ijms22052614] [Cited by in Crossref: 1] [Cited by in F6Publishing: 12] [Article Influence: 1.0] [Reference Citation Analysis]
26 Brázda V, Porubiaková O, Cantara A, Bohálová N, Coufal J, Bartas M, Fojta M, Mergny JL. G-quadruplexes in H1N1 influenza genomes. BMC Genomics 2021;22:77. [PMID: 33485319 DOI: 10.1186/s12864-021-07377-9] [Cited by in Crossref: 2] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
27 Kadam SB, Sukhramani GS, Bishnoi P, Pable AA, Barvkar VT. SARS-CoV-2, the pandemic coronavirus: Molecular and structural insights. J Basic Microbiol 2021;61:180-202. [PMID: 33460172 DOI: 10.1002/jobm.202000537] [Cited by in Crossref: 7] [Cited by in F6Publishing: 31] [Article Influence: 7.0] [Reference Citation Analysis]
28 Bartas M, Červeň J, Guziurová S, Slychko K, Pečinka P. Amino Acid Composition in Various Types of Nucleic Acid-Binding Proteins. Int J Mol Sci 2021;22:E922. [PMID: 33477647 DOI: 10.3390/ijms22020922] [Cited by in Crossref: 1] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
29 Dutkiewicz M, Kuczynski J, Jarzab M, Stachowiak A, Swiatkowska A. New RNA Structural Elements Identified in the Coding Region of the Coxsackie B3 Virus Genome. Viruses 2020;12:E1232. [PMID: 33143071 DOI: 10.3390/v12111232] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
30 Zhao C, Qin G, Niu J, Wang Z, Wang C, Ren J, Qu X. Targeting RNA G-Quadruplex in SARS-CoV-2: A Promising Therapeutic Target for COVID-19? Angew Chem Int Ed Engl 2021;60:432-8. [PMID: 32939952 DOI: 10.1002/anie.202011419] [Cited by in Crossref: 21] [Cited by in F6Publishing: 51] [Article Influence: 10.5] [Reference Citation Analysis]
31 Zhao C, Qin G, Niu J, Wang Z, Wang C, Ren J, Qu X. Targeting RNA G‐Quadruplex in SARS‐CoV‐2: A Promising Therapeutic Target for COVID‐19? Angew Chem 2021;133:436-42. [DOI: 10.1002/ange.202011419] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
32 Srivastava R, Daulatabad SV, Srivastava M, Janga SC. Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans. Int J Mol Sci 2020;21:E7090. [PMID: 32993015 DOI: 10.3390/ijms21197090] [Cited by in Crossref: 12] [Cited by in F6Publishing: 18] [Article Influence: 6.0] [Reference Citation Analysis]
33 Pereira F. Evolutionary dynamics of the SARS-CoV-2 ORF8 accessory gene. Infect Genet Evol 2020;85:104525. [PMID: 32890763 DOI: 10.1016/j.meegid.2020.104525] [Cited by in Crossref: 39] [Cited by in F6Publishing: 47] [Article Influence: 19.5] [Reference Citation Analysis]
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