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For: Maleki F, Ovens K, Hogan DJ, Kusalik AJ. Gene Set Analysis: Challenges, Opportunities, and Future Research. Front Genet 2020;11:654. [PMID: 32695141 DOI: 10.3389/fgene.2020.00654] [Cited by in Crossref: 18] [Cited by in F6Publishing: 33] [Article Influence: 9.0] [Reference Citation Analysis]
Number Citing Articles
1 Shen Y, Zhang C, Cui S, Wang R, Cai H, Zhao W, Zhu J, Yu Y. Transcriptional substrates underlying functional connectivity profiles of subregions within the human sensorimotor cortex. Hum Brain Mapp 2022. [PMID: 35899321 DOI: 10.1002/hbm.26031] [Reference Citation Analysis]
2 Garg T, Weiss CR, Sheth RA. Techniques for Profiling the Cellular Immune Response and Their Implications for Interventional Oncology. Cancers (Basel) 2022;14:3628. [PMID: 35892890 DOI: 10.3390/cancers14153628] [Reference Citation Analysis]
3 Saravanakumar K, Santosh SS, Ahamed MA, Sathiyaseelan A, Sultan G, Irfan N, Ali DM, Wang MH. Bioinformatics strategies for studying the molecular mechanisms of fungal extracellular vesicles with a focus on infection and immune responses. Brief Bioinform 2022:bbac250. [PMID: 35794708 DOI: 10.1093/bib/bbac250] [Reference Citation Analysis]
4 Molendijk J, Yip R, Parker BL. urPTMdb/TeaProt: Upstream and Downstream Proteomics Analysis. J Proteome Res 2022. [PMID: 35759515 DOI: 10.1021/acs.jproteome.2c00048] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
5 Maleki F, Draghici S, Menezes R, Kusalik A. Editorial: Advancement in Gene Set Analysis: Gaining Insight From High-Throughput Data. Front Genet 2022;13:928724. [PMID: 35711947 DOI: 10.3389/fgene.2022.928724] [Reference Citation Analysis]
6 Kazmierczak de Camargo JP, Prezia GNB, Shiokawa N, Sato MT, Rosati R, Beate Winter Boldt A. New Insights on the Regulatory Gene Network Disturbed in Central Areolar Choroidal Dystrophy-Beyond Classical Gene Candidates. Front Genet 2022;13:886461. [PMID: 35656327 DOI: 10.3389/fgene.2022.886461] [Reference Citation Analysis]
7 Wang Y, Hong Y, Mao S, Jiang Y, Cui Y, Pan J, Luo Y. An Interaction-Based Method for Refining Results From Gene Set Enrichment Analysis. Front Genet 2022;13:890672. [DOI: 10.3389/fgene.2022.890672] [Reference Citation Analysis]
8 Harrar SW, Xu Y. Nonparametric Tests for Multivariate Association. Symmetry 2022;14:1112. [DOI: 10.3390/sym14061112] [Reference Citation Analysis]
9 Jiang W, Jones JC, Shankavaram U, Sproull M, Camphausen K, Krauze AV. Analytical Considerations of Large-Scale Aptamer-Based Datasets for Translational Applications. Cancers 2022;14:2227. [DOI: 10.3390/cancers14092227] [Reference Citation Analysis]
10 Cheng X, Liu Y, Wang J, Chen Y, Robertson AG, Zhang X, Jones SJM, Taubert S. cSurvival: a web resource for biomarker interactions in cancer outcomes and in cell lines. Briefings in Bioinformatics. [DOI: 10.1093/bib/bbac090] [Reference Citation Analysis]
11 Lötsch J, Mustonen L, Harno H, Kalso E. Machine-Learning Analysis of Serum Proteomics in Neuropathic Pain after Nerve Injury in Breast Cancer Surgery Points at Chemokine Signaling via SIRT2 Regulation. Int J Mol Sci 2022;23:3488. [PMID: 35408848 DOI: 10.3390/ijms23073488] [Reference Citation Analysis]
12 Guala D, Sonnhammer ELL. Network Crosstalk as a Basis for Drug Repurposing. Front Genet 2022;13:792090. [DOI: 10.3389/fgene.2022.792090] [Reference Citation Analysis]
13 Wijesooriya K, Jadaan SA, Perera KL, Kaur T, Ziemann M. Urgent need for consistent standards in functional enrichment analysis. PLoS Comput Biol 2022;18:e1009935. [PMID: 35263338 DOI: 10.1371/journal.pcbi.1009935] [Cited by in Crossref: 4] [Article Influence: 4.0] [Reference Citation Analysis]
14 Purohit V, Wagner A, Yosef N, Kuchroo VK. Systems-based approaches to study immunometabolism. Cell Mol Immunol 2022;19:409-20. [PMID: 35121805 DOI: 10.1038/s41423-021-00783-9] [Cited by in Crossref: 2] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
15 Santamaria G, Ruiz-rodriguez P, Renau-mínguez C, Pinto FR, Coscollá M. In Silico Exploration of Mycobacterium tuberculosis Metabolic Networks Shows Host-Associated Convergent Fluxomic Phenotypes. Biomolecules 2022;12:376. [DOI: 10.3390/biom12030376] [Reference Citation Analysis]
16 Subramanian A, Zakeri P, Mousa M, Alnaqbi H, Alshamsi FY, Bettoni L, Damiani E, Alsafar H, Saeys Y, Carmeliet P. Angiogenesis goes computational – The future way forward to discover new angiogenic targets? Computational and Structural Biotechnology Journal 2022;20:5235-55. [DOI: 10.1016/j.csbj.2022.09.019] [Reference Citation Analysis]
17 Marczyk M, Macioszek A, Tobiasz J, Polanska J, Zyla J. Importance of SNP Dependency Correction and Association Integration for Gene Set Analysis in Genome-Wide Association Studies. Front Genet 2021;12:767358. [PMID: 34956320 DOI: 10.3389/fgene.2021.767358] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
18 Vilor-Tejedor N, Garrido-Martín D, Rodriguez-Fernandez B, Lamballais S, Guigó R, Gispert JD. Multivariate Analysis and Modelling of multiple Brain endOphenotypes: Let's MAMBO! Comput Struct Biotechnol J 2021;19:5800-10. [PMID: 34765095 DOI: 10.1016/j.csbj.2021.10.019] [Reference Citation Analysis]
19 Muley VY, König R. Human transcriptional gene regulatory network compiled from 14 data resources. Biochimie 2021:S0300-9084(21)00253-4. [PMID: 34740743 DOI: 10.1016/j.biochi.2021.10.016] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
20 Baltoumas FA, Zafeiropoulou S, Karatzas E, Paragkamian S, Thanati F, Iliopoulos I, Eliopoulos AG, Schneider R, Jensen LJ, Pafilis E, Pavlopoulos GA. OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis. NAR Genom Bioinform 2021;3:lqab090. [PMID: 34632381 DOI: 10.1093/nargab/lqab090] [Cited by in F6Publishing: 4] [Reference Citation Analysis]
21 Gerstner N, Kehl T, Lenhof K, Eckhart L, Schneider L, Stöckel D, Backes C, Meese E, Keller A, Lenhof HP. GeneTrail: A Framework for the Analysis of High-Throughput Profiles. Front Mol Biosci 2021;8:716544. [PMID: 34604304 DOI: 10.3389/fmolb.2021.716544] [Reference Citation Analysis]
22 Maleki F, Ovens K, McQuillan I, Kusalik AJ. Silver: Forging almost Gold Standard Datasets. Genes (Basel) 2021;12:1523. [PMID: 34680918 DOI: 10.3390/genes12101523] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
23 Ovens K, Eames BF, McQuillan I. Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution. Front Genet 2021;12:695399. [PMID: 34484293 DOI: 10.3389/fgene.2021.695399] [Cited by in Crossref: 1] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
24 Baltoumas FA, Zafeiropoulou S, Karatzas E, Koutrouli M, Thanati F, Voutsadaki K, Gkonta M, Hotova J, Kasionis I, Hatzis P, Pavlopoulos GA. Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. Biomolecules 2021;11:1245. [PMID: 34439912 DOI: 10.3390/biom11081245] [Cited by in Crossref: 1] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
25 Thanati F, Karatzas E, Baltoumas FA, Stravopodis DJ, Eliopoulos AG, Pavlopoulos GA. FLAME: A Web Tool for Functional and Literature Enrichment Analysis of Multiple Gene Lists. Biology (Basel) 2021;10:665. [PMID: 34356520 DOI: 10.3390/biology10070665] [Cited by in Crossref: 1] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
26 Kringel D, Malkusch S, Lötsch J. Drugs and Epigenetic Molecular Functions. A Pharmacological Data Scientometric Analysis. Int J Mol Sci 2021;22:7250. [PMID: 34298869 DOI: 10.3390/ijms22147250] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
27 Eddie BJ, Malanoski AP, Onderko EL, Phillips DA, Glaven SM. Marinobacter atlanticus electrode biofilms differentially regulate gene expression depending on electrode potential and lifestyle. Biofilm 2021;3:100051. [PMID: 34195607 DOI: 10.1016/j.bioflm.2021.100051] [Cited by in F6Publishing: 4] [Reference Citation Analysis]
28 Li S, Zhao L. Vaccine adverse event enrichment tests. Stat Med 2021. [PMID: 33969520 DOI: 10.1002/sim.9027] [Reference Citation Analysis]
29 Selmoni O, Lecellier G, Magalon H, Vigliola L, Oury N, Benzoni F, Peignon C, Joost S, Berteaux-Lecellier V. Seascape genomics reveals candidate molecular targets of heat stress adaptation in three coral species. Mol Ecol 2021;30:1892-906. [PMID: 33619812 DOI: 10.1111/mec.15857] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
30 Krokidis MG, Exarchos TP, Vlamos P. Data-driven biomarker analysis using computational omics approaches to assess neurodegenerative disease progression. Math Biosci Eng 2021;18:1813-32. [PMID: 33757212 DOI: 10.3934/mbe.2021094] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
31 Gu Y, Chow MJ, Kapoor A, Lin X, Mei W, Tang D. Differential Expression of a Panel of Ten CNTN1-Associated Genes during Prostate Cancer Progression and the Predictive Properties of the Panel Towards Prostate Cancer Relapse. Genes (Basel) 2021;12:257. [PMID: 33578925 DOI: 10.3390/genes12020257] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
32 Cockrum C, Kaneshiro KR, Rechtsteiner A, Tabuchi TM, Strome S. A primer for generating and using transcriptome data and gene sets. Development 2020;147:dev193854. [PMID: 33361089 DOI: 10.1242/dev.193854] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
33 Miyano T, Tanaka RJ. Identification of keratinocyte subpopulations in transcriptome to evaluate drug effects in atopic dermatitis. Br J Dermatol 2021;184:798-9. [PMID: 33161575 DOI: 10.1111/bjd.19615] [Reference Citation Analysis]
34 Hajjo R, Tropsha A. A Systems Biology Workflow for Drug and Vaccine Repurposing: Identifying Small-Molecule BCG Mimics to Reduce or Prevent COVID-19 Mortality. Pharm Res 2020;37:212. [PMID: 33025261 DOI: 10.1007/s11095-020-02930-9] [Cited by in Crossref: 2] [Cited by in F6Publishing: 7] [Article Influence: 1.0] [Reference Citation Analysis]