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For: Paulo JA. Sample preparation for proteomic analysis using a GeLC-MS/MS strategy. J Biol Methods 2016;3:e45. [PMID: 27482532 DOI: 10.14440/jbm.2016.106] [Cited by in Crossref: 28] [Cited by in F6Publishing: 23] [Article Influence: 4.7] [Reference Citation Analysis]
Number Citing Articles
1 Jin Y, Wen M, Yuan Q, Zhang J, Tan W. Beneficial effects of Coomassie staining on proteomic analysis employing PAGE separation followed with whole-gel slicing, in-gel digestion and quantitative LC-MS/MS. Journal of Chromatography B 2019;1110-1111:25-35. [DOI: 10.1016/j.jchromb.2019.01.031] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
2 Murphy S, Ohlendieck K. Proteomic profiling of large myofibrillar proteins from dried and long-term stored polyacrylamide gels. Analytical Biochemistry 2018;543:8-11. [DOI: 10.1016/j.ab.2017.11.022] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 1.8] [Reference Citation Analysis]
3 Yang Y, Song H, He D, Zhang S, Dai S, Xie X, Lin S, Hao Z, Zheng H, Chen PR. Genetically encoded releasable photo-cross-linking strategies for studying protein–protein interactions in living cells. Nat Protoc 2017;12:2147-68. [DOI: 10.1038/nprot.2017.090] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 3.2] [Reference Citation Analysis]
4 Sperk M, van Domselaar R, Rodriguez JE, Mikaeloff F, Sá Vinhas B, Saccon E, Sönnerborg A, Singh K, Gupta S, Végvári Á, Neogi U. Utility of Proteomics in Emerging and Re-Emerging Infectious Diseases Caused by RNA Viruses. J Proteome Res 2020;19:4259-74. [PMID: 33095583 DOI: 10.1021/acs.jproteome.0c00380] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 3.0] [Reference Citation Analysis]
5 Ferreira R, Trindade F, Vitorino R. Proteome Profiling of Sertoli Cells Using a GeLC-MS/MS Strategy. In: Alves MG, Oliveira PF, editors. Sertoli Cells. New York: Springer; 2018. pp. 173-90. [DOI: 10.1007/978-1-4939-7698-0_13] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
6 Rossio V, Paulo JA, Chick J, Brasher B, Gygi SP, King RW. Proteomics of broad deubiquitylase inhibition unmasks redundant enzyme function to reveal substrates and assess enzyme specificity. Cell Chem Biol 2021;28:487-502.e5. [PMID: 33417828 DOI: 10.1016/j.chembiol.2020.12.007] [Reference Citation Analysis]
7 Calvo IA, Sharma S, Paulo JA, Gulka AOD, Boeszoermenyi A, Zhang J, Lombana JM, Palmieri CM, Laviolette LA, Arthanari H, Iliopoulos O, Gygi SP, Motamedi M. The fission yeast FLCN/FNIP complex augments TORC1 repression or activation in response to amino acid (AA) availability. iScience 2021;24:103338. [PMID: 34805795 DOI: 10.1016/j.isci.2021.103338] [Reference Citation Analysis]
8 Iuchi S, Paulo JA. Lysine-specific demethylase 2A enhances binding of various nuclear factors to CpG-rich genomic DNAs by action of its CXXC-PHD domain. Sci Rep 2019;9:5496. [PMID: 30940825 DOI: 10.1038/s41598-019-41896-6] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
9 Yoon YE, Cho HM, Bae DW, Lee SJ, Choe H, Kim MC, Cheong MS, Lee YB. Erythromycin Treatment of Brassica campestris Seedlings Impacts the Photosynthetic and Protein Synthesis Pathways. Life (Basel) 2020;10:E311. [PMID: 33255918 DOI: 10.3390/life10120311] [Reference Citation Analysis]
10 Di Santo R, Quagliarini E, Digiacomo L, Pozzi D, Di Carlo A, Caputo D, Cerrato A, Montone CM, Mahmoudi M, Caracciolo G. Protein corona profile of graphene oxide allows detection of glioblastoma multiforme using a simple one-dimensional gel electrophoresis technique: a proof-of-concept study. Biomater Sci 2021;9:4671-8. [PMID: 34018505 DOI: 10.1039/d1bm00488c] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
11 Perez Verdaguer M, Zhang T, Paulo JA, Gygi S, Watkins SC, Sakurai H, Sorkin A. Mechanism of p38 MAPK-induced EGFR endocytosis and its crosstalk with ligand-induced pathways. J Cell Biol 2021;220:e202102005. [PMID: 34032851 DOI: 10.1083/jcb.202102005] [Reference Citation Analysis]
12 Li M, Zheng H, Lin M, Zhu W, Zhang J. Characterization of the protein and peptide of excipient zein by the multi-enzyme digestion coupled with nano-LC-MS/MS. Food Chemistry 2020;321:126712. [DOI: 10.1016/j.foodchem.2020.126712] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 2.5] [Reference Citation Analysis]
13 Cole LM, Clench MR, Francese S. Sample Treatment for Tissue Proteomics in Cancer, Toxicology, and Forensics. Adv Exp Med Biol 2019;1073:77-123. [PMID: 31236840 DOI: 10.1007/978-3-030-12298-0_4] [Cited by in Crossref: 3] [Article Influence: 1.0] [Reference Citation Analysis]
14 Song P, Kwon Y, Joo JY, Kim DG, Yoon JH. Secretomics to Discover Regulators in Diseases. Int J Mol Sci 2019;20:E3893. [PMID: 31405033 DOI: 10.3390/ijms20163893] [Cited by in Crossref: 15] [Cited by in F6Publishing: 12] [Article Influence: 5.0] [Reference Citation Analysis]
15 Nguyen AT, Prado MA, Schmidt PJ, Sendamarai AK, Wilson-Grady JT, Min M, Campagna DR, Tian G, Shi Y, Dederer V, Kawan M, Kuehnle N, Paulo JA, Yao Y, Weiss MJ, Justice MJ, Gygi SP, Fleming MD, Finley D. UBE2O remodels the proteome during terminal erythroid differentiation. Science 2017;357:eaan0218. [PMID: 28774900 DOI: 10.1126/science.aan0218] [Cited by in Crossref: 73] [Cited by in F6Publishing: 63] [Article Influence: 18.3] [Reference Citation Analysis]
16 Yoon H, Spinelli JB, Zaganjor E, Wong SJ, German NJ, Randall EC, Dean A, Clermont A, Paulo JA, Garcia D, Li H, Rombold O, Agar NYR, Goodyear LJ, Shaw RJ, Gygi SP, Auwerx J, Haigis MC. PHD3 Loss Promotes Exercise Capacity and Fat Oxidation in Skeletal Muscle. Cell Metab 2020;32:215-228.e7. [PMID: 32663458 DOI: 10.1016/j.cmet.2020.06.017] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 2.5] [Reference Citation Analysis]
17 Iglesias N, Paulo JA, Tatarakis A, Wang X, Edwards AL, Bhanu NV, Garcia BA, Haas W, Gygi SP, Moazed D. Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance. Mol Cell 2020;77:51-66.e8. [PMID: 31784357 DOI: 10.1016/j.molcel.2019.10.018] [Cited by in Crossref: 26] [Cited by in F6Publishing: 15] [Article Influence: 8.7] [Reference Citation Analysis]
18 Murphy S, Henry M, Meleady P, Ohlendieck K. Utilization of dried and long-term stored polyacrylamide gels for the advanced proteomic profiling of mitochondrial contact sites from rat liver. Biol Methods Protoc 2018;3:bpy008. [PMID: 32161802 DOI: 10.1093/biomethods/bpy008] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
19 Goldman AR, Beer LA, Tang HY, Hembach P, Zayas-Bazan D, Speicher DW. Proteome Analysis Using Gel-LC-MS/MS. Curr Protoc Protein Sci 2019;96:e93. [PMID: 31180188 DOI: 10.1002/cpps.93] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
20 Saleh AM, Jacobson KR, Kinzer-Ursem TL, Calve S. Dynamics of Non-Canonical Amino Acid-Labeled Intra- and Extracellular Proteins in the Developing Mouse. Cell Mol Bioeng 2019;12:495-509. [PMID: 31719929 DOI: 10.1007/s12195-019-00592-1] [Cited by in Crossref: 10] [Cited by in F6Publishing: 6] [Article Influence: 3.3] [Reference Citation Analysis]
21 Li Y, Sun Y, Ni A, Shi L, Wang P, Isa AM, Ge P, Jiang L, Fan J, Ma H, Yang G, Chen J. Seminal Plasma Proteome as an Indicator of Sperm Dysfunction and Low Sperm Motility in Chickens. Mol Cell Proteomics 2020;19:1035-46. [PMID: 32312844 DOI: 10.1074/mcp.RA120.002017] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
22 Kim JS, He X, Liu J, Duan Z, Kim T, Gerard J, Kim B, Pillai MM, Lane WS, Noble WS, Budnik B, Waldman T. Systematic proteomics of endogenous human cohesin reveals an interaction with diverse splicing factors and RNA-binding proteins required for mitotic progression. J Biol Chem 2019;294:8760-72. [PMID: 31010829 DOI: 10.1074/jbc.RA119.007832] [Cited by in Crossref: 12] [Cited by in F6Publishing: 12] [Article Influence: 4.0] [Reference Citation Analysis]
23 Canisso IF, Loux S, Scoggin KE, Squires EL, Troedsson MH, Ball BA. Fetal-fluid proteome analyses in late-term healthy pregnant mares and in mares with experimentally induced ascending placentitis. Reprod Fertil Dev 2019;31:1486-96. [PMID: 31092309 DOI: 10.1071/RD18460] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
24 Michowski W, Chick JM, Chu C, Kolodziejczyk A, Wang Y, Suski JM, Abraham B, Anders L, Day D, Dunkl LM, Li Cheong Man M, Zhang T, Laphanuwat P, Bacon NA, Liu L, Fassl A, Sharma S, Otto T, Jecrois E, Han R, Sweeney KE, Marro S, Wernig M, Geng Y, Moses A, Li C, Gygi SP, Young RA, Sicinski P. Cdk1 Controls Global Epigenetic Landscape in Embryonic Stem Cells. Mol Cell 2020;78:459-476.e13. [PMID: 32240602 DOI: 10.1016/j.molcel.2020.03.010] [Cited by in Crossref: 17] [Cited by in F6Publishing: 12] [Article Influence: 8.5] [Reference Citation Analysis]
25 He X, Kim JS, Diaz-Martinez LA, Han C, Lane WS, Budnik B, Waldman T. USP13 interacts with cohesin and regulates its ubiquitination in human cells. J Biol Chem 2021;296:100194. [PMID: 33334891 DOI: 10.1074/jbc.RA120.015762] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]