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For: Hale VL, Jeraldo P, Chen J, Mundy M, Yao J, Priya S, Keeney G, Lyke K, Ridlon J, White BA, French AJ, Thibodeau SN, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Sung J, Blekhman R, Boardman L, Larson D, Nelson H, Chia N. Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. Genome Med 2018;10:78. [PMID: 30376889 DOI: 10.1186/s13073-018-0586-6] [Cited by in Crossref: 58] [Cited by in F6Publishing: 48] [Article Influence: 14.5] [Reference Citation Analysis]
Number Citing Articles
1 Kim M, Vogtmann E, Ahlquist DA, Devens ME, Kisiel JB, Taylor WR, White BA, Hale VL, Sung J, Chia N, Sinha R, Chen J. Fecal Metabolomic Signatures in Colorectal Adenoma Patients Are Associated with Gut Microbiota and Early Events of Colorectal Cancer Pathogenesis. mBio 2020;11:e03186-19. [PMID: 32071266 DOI: 10.1128/mBio.03186-19] [Cited by in Crossref: 22] [Cited by in F6Publishing: 17] [Article Influence: 11.0] [Reference Citation Analysis]
2 Nik-Zainal S. From genome integrity to cancer. Genome Med 2019;11:4. [PMID: 30696459 DOI: 10.1186/s13073-019-0617-y] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
3 Chowdhury S, Fong SS. Computational Modeling of the Human Microbiome. Microorganisms 2020;8:E197. [PMID: 32023941 DOI: 10.3390/microorganisms8020197] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 3.5] [Reference Citation Analysis]
4 Murphy N, Moreno V, Hughes DJ, Vodicka L, Vodicka P, Aglago EK, Gunter MJ, Jenab M. Lifestyle and dietary environmental factors in colorectal cancer susceptibility. Mol Aspects Med 2019;69:2-9. [PMID: 31233770 DOI: 10.1016/j.mam.2019.06.005] [Cited by in Crossref: 47] [Cited by in F6Publishing: 43] [Article Influence: 15.7] [Reference Citation Analysis]
5 Huybrechts I, Zouiouich S, Loobuyck A, Vandenbulcke Z, Vogtmann E, Pisanu S, Iguacel I, Scalbert A, Indave I, Smelov V, Gunter MJ, Michels N. The Human Microbiome in Relation to Cancer Risk: A Systematic Review of Epidemiologic Studies. Cancer Epidemiol Biomarkers Prev 2020;29:1856-68. [PMID: 32727720 DOI: 10.1158/1055-9965.EPI-20-0288] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 4.5] [Reference Citation Analysis]
6 Jang BS, Chang JH, Chie EK, Kim K, Park JW, Kim MJ, Song EJ, Nam YD, Kang SW, Jeong SY, Kim HJ. Gut Microbiome Composition Is Associated with a Pathologic Response After Preoperative Chemoradiation in Patients with Rectal Cancer. Int J Radiat Oncol Biol Phys 2020;107:736-46. [PMID: 32315676 DOI: 10.1016/j.ijrobp.2020.04.015] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 5.0] [Reference Citation Analysis]
7 Yan Y, Drew DA, Markowitz A, Lloyd-Price J, Abu-Ali G, Nguyen LH, Tran C, Chung DC, Gilpin KK, Meixell D, Parziale M, Schuck M, Patel Z, Richter JM, Kelsey PB, Garrett WS, Chan AT, Stadler ZK, Huttenhower C. Structure of the Mucosal and Stool Microbiome in Lynch Syndrome. Cell Host Microbe 2020;27:585-600.e4. [PMID: 32240601 DOI: 10.1016/j.chom.2020.03.005] [Cited by in Crossref: 12] [Cited by in F6Publishing: 11] [Article Influence: 6.0] [Reference Citation Analysis]
8 Taghinezhad-S S, Mohseni AH, Fu X. Intervention on gut microbiota may change the strategy for management of colorectal cancer. J Gastroenterol Hepatol 2021;36:1508-17. [PMID: 33295040 DOI: 10.1111/jgh.15369] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
9 Johns MS, Petrelli NJ. Microbiome and colorectal cancer: A review of the past, present, and future. Surg Oncol 2021;37:101560. [PMID: 33848761 DOI: 10.1016/j.suronc.2021.101560] [Reference Citation Analysis]
10 Kalantari J, Nelson H, Chia N. The Unreasonable Effectiveness of Inverse Reinforcement Learning in Advancing Cancer Research.Proc Conf AAAI Artif Intell. 2020;34:437-445. [PMID: 34055465 DOI: 10.1609/aaai.v34i01.5380] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
11 Blachier F, Andriamihaja M, Larraufie P, Ahn E, Lan A, Kim E. Production of hydrogen sulfide by the intestinal microbiota and epithelial cells and consequences for the colonic and rectal mucosa. Am J Physiol Gastrointest Liver Physiol 2021;320:G125-35. [PMID: 33084401 DOI: 10.1152/ajpgi.00261.2020] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
12 Crooks TA, Madison JD, Walsh DM, Herbert WG, Jeraldo PR, Chia N, Cliby WA, Kaufmann SH, Walther-Antonio MRS. Porphyromonas somerae Invasion of Endometrial Cancer Cells. Front Microbiol 2021;12:674835. [PMID: 34367083 DOI: 10.3389/fmicb.2021.674835] [Reference Citation Analysis]
13 Zhou C, Cheng X, Tu S. Current status and future perspective of immune checkpoint inhibitors in colorectal cancer. Cancer Lett 2021;521:119-29. [PMID: 34464671 DOI: 10.1016/j.canlet.2021.07.023] [Reference Citation Analysis]
14 Picardo SL, Coburn B, Hansen AR. The microbiome and cancer for clinicians. Crit Rev Oncol Hematol. 2019;141:1-12. [PMID: 31202124 DOI: 10.1016/j.critrevonc.2019.06.004] [Cited by in Crossref: 33] [Cited by in F6Publishing: 27] [Article Influence: 11.0] [Reference Citation Analysis]
15 Li L, Li X, Zhong W, Yang M, Xu M, Sun Y, Ma J, Liu T, Song X, Dong W, Liu X, Chen Y, Liu Y, Abla Z, Liu W, Wang B, Jiang K, Cao H. Gut microbiota from colorectal cancer patients enhances the progression of intestinal adenoma in Apcmin/+ mice. EBioMedicine. 2019;48:301-315. [PMID: 31594750 DOI: 10.1016/j.ebiom.2019.09.021] [Cited by in Crossref: 29] [Cited by in F6Publishing: 26] [Article Influence: 9.7] [Reference Citation Analysis]
16 Brunner JD, Chia N. Metabolite-mediated modelling of microbial community dynamics captures emergent behaviour more effectively than species-species modelling. J R Soc Interface 2019;16:20190423. [PMID: 31640497 DOI: 10.1098/rsif.2019.0423] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 1.3] [Reference Citation Analysis]
17 Mori G, Orena BS, Cultrera I, Barbieri G, Albertini AM, Ranzani GN, Carnevali I, Tibiletti MG, Pasca MR. Gut Microbiota Analysis in Postoperative Lynch Syndrome Patients. Front Microbiol 2019;10:1746. [PMID: 31417532 DOI: 10.3389/fmicb.2019.01746] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 3.0] [Reference Citation Analysis]
18 Zhang C, El-Kebir M, Ochoa I. Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples. Nat Commun 2021;12:2204. [PMID: 33850139 DOI: 10.1038/s41467-021-22466-9] [Reference Citation Analysis]
19 Xi Y, Yuefen P, Wei W, Quan Q, Jing Z, Jiamin X, Shuwen H. Analysis of prognosis, genome, microbiome, and microbial metabolome in different sites of colorectal cancer. J Transl Med 2019;17:353. [PMID: 31665031 DOI: 10.1186/s12967-019-2102-1] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 3.7] [Reference Citation Analysis]
20 Leman JKH, Munoz-Erazo L, Kemp RA. The Intestinal Tumour Microenvironment. Adv Exp Med Biol 2020;1226:1-22. [PMID: 32030672 DOI: 10.1007/978-3-030-36214-0_1] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
21 Botticelli A, Vernocchi P, Marini F, Quagliariello A, Cerbelli B, Reddel S, Del Chierico F, Di Pietro F, Giusti R, Tomassini A, Giampaoli O, Miccheli A, Zizzari IG, Nuti M, Putignani L, Marchetti P. Gut metabolomics profiling of non-small cell lung cancer (NSCLC) patients under immunotherapy treatment.J Transl Med. 2020;18:49. [PMID: 32014010 DOI: 10.1186/s12967-020-02231-0] [Cited by in Crossref: 33] [Cited by in F6Publishing: 34] [Article Influence: 16.5] [Reference Citation Analysis]
22 Duijster JW, Franz E, Neefjes J, Mughini-Gras L. Bacterial and Parasitic Pathogens as Risk Factors for Cancers in the Gastrointestinal Tract: A Review of Current Epidemiological Knowledge. Front Microbiol 2021;12:790256. [PMID: 34956157 DOI: 10.3389/fmicb.2021.790256] [Reference Citation Analysis]
23 Randrian V, Evrard C, Tougeron D. Microsatellite Instability in Colorectal Cancers: Carcinogenesis, Neo-Antigens, Immuno-Resistance and Emerging Therapies. Cancers (Basel) 2021;13:3063. [PMID: 34205397 DOI: 10.3390/cancers13123063] [Reference Citation Analysis]
24 Ward NP, DeNicola GM. Sulfur metabolism and its contribution to malignancy. Int Rev Cell Mol Biol 2019;347:39-103. [PMID: 31451216 DOI: 10.1016/bs.ircmb.2019.05.001] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 3.3] [Reference Citation Analysis]
25 Hosseinkhani F, Heinken A, Thiele I, Lindenburg PW, Harms AC, Hankemeier T. The contribution of gut bacterial metabolites in the human immune signaling pathway of non-communicable diseases. Gut Microbes 2021;13:1-22. [PMID: 33590776 DOI: 10.1080/19490976.2021.1882927] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 3.0] [Reference Citation Analysis]
26 Allen J, Sears CL. Impact of the gut microbiome on the genome and epigenome of colon epithelial cells: contributions to colorectal cancer development. Genome Med. 2019;11:11. [PMID: 30803449 DOI: 10.1186/s13073-019-0621-2] [Cited by in Crossref: 60] [Cited by in F6Publishing: 55] [Article Influence: 20.0] [Reference Citation Analysis]
27 Heinken A, Ravcheev DA, Baldini F, Heirendt L, Fleming RMT, Thiele I. Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease. Microbiome. 2019;7:75. [PMID: 31092280 DOI: 10.1186/s40168-019-0689-3] [Cited by in Crossref: 72] [Cited by in F6Publishing: 61] [Article Influence: 24.0] [Reference Citation Analysis]
28 Haruki K, Kosumi K, Hamada T, Twombly TS, Väyrynen JP, Kim SA, Masugi Y, Qian ZR, Mima K, Baba Y, da Silva A, Borowsky J, Arima K, Fujiyoshi K, Lau MC, Li P, Guo C, Chen Y, Song M, Nowak JA, Nishihara R, Yanaga K, Zhang X, Wu K, Bullman S, Garrett WS, Huttenhower C, Meyerhardt JA, Giannakis M, Chan AT, Fuchs CS, Ogino S. Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer. J Pathol 2020;250:397-408. [PMID: 31880318 DOI: 10.1002/path.5381] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 5.0] [Reference Citation Analysis]
29 Xiao A, Liu C, Li J. The Role of H2S in the Gastrointestinal Tract and Microbiota. Adv Exp Med Biol 2021;1315:67-98. [PMID: 34302689 DOI: 10.1007/978-981-16-0991-6_4] [Reference Citation Analysis]
30 Clarke GA, Hartse BX, Niaraki Asli AE, Taghavimehr M, Hashemi N, Abbasi Shirsavar M, Montazami R, Alimoradi N, Nasirian V, Ouedraogo LJ, Hashemi NN. Advancement of Sensor Integrated Organ-on-Chip Devices. Sensors (Basel) 2021;21:1367. [PMID: 33671996 DOI: 10.3390/s21041367] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
31 Tong Y, Gao H, Qi Q, Liu X, Li J, Gao J, Li P, Wang Y, Du L, Wang C. High fat diet, gut microbiome and gastrointestinal cancer. Theranostics 2021;11:5889-910. [PMID: 33897888 DOI: 10.7150/thno.56157] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
32 Temraz S, Nassar F, Nasr R, Charafeddine M, Mukherji D, Shamseddine A. Gut Microbiome: A Promising Biomarker for Immunotherapy in Colorectal Cancer. Int J Mol Sci 2019;20:E4155. [PMID: 31450712 DOI: 10.3390/ijms20174155] [Cited by in Crossref: 24] [Cited by in F6Publishing: 19] [Article Influence: 8.0] [Reference Citation Analysis]
33 Debesa-Tur G, Pérez-Brocal V, Ruiz-Ruiz S, Castillejo A, Latorre A, Soto JL, Moya A. Metagenomic analysis of formalin-fixed paraffin-embedded tumor and normal mucosa reveals differences in the microbiome of colorectal cancer patients. Sci Rep 2021;11:391. [PMID: 33432015 DOI: 10.1038/s41598-020-79874-y] [Cited by in Crossref: 3] [Cited by in F6Publishing: 6] [Article Influence: 3.0] [Reference Citation Analysis]
34 Nelson H, Chia N. Gut Microbiome and Colon Cancer: A Plausible Explanation for Dietary Contributions to Cancer. J Am Coll Surg 2019;229:231-5. [PMID: 31082472 DOI: 10.1016/j.jamcollsurg.2019.05.003] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.7] [Reference Citation Analysis]
35 Zong Y, Zhou Y, Liao B, Liao M, Shi Y, Wei Y, Huang Y, Zhou X, Cheng L, Ren B. The Interaction Between the Microbiome and Tumors. Front Cell Infect Microbiol 2021;11:673724. [PMID: 34532297 DOI: 10.3389/fcimb.2021.673724] [Reference Citation Analysis]
36 Saus E, Iraola-Guzmán S, Willis JR, Brunet-Vega A, Gabaldón T. Microbiome and colorectal cancer: Roles in carcinogenesis and clinical potential. Mol Aspects Med 2019;69:93-106. [PMID: 31082399 DOI: 10.1016/j.mam.2019.05.001] [Cited by in Crossref: 67] [Cited by in F6Publishing: 54] [Article Influence: 22.3] [Reference Citation Analysis]
37 Saez A, Herrero-Fernandez B, Gomez-Bris R, Somovilla-Crespo B, Rius C, Gonzalez-Granado JM. Lamin A/C and the Immune System: One Intermediate Filament, Many Faces. Int J Mol Sci 2020;21:E6109. [PMID: 32854281 DOI: 10.3390/ijms21176109] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
38 Lee SA, Liu F, Riordan SM, Lee CS, Zhang L. Global Investigations of Fusobacterium nucleatum in Human Colorectal Cancer. Front Oncol 2019;9:566. [PMID: 31334107 DOI: 10.3389/fonc.2019.00566] [Cited by in Crossref: 19] [Cited by in F6Publishing: 19] [Article Influence: 6.3] [Reference Citation Analysis]
39 Kanikarla Marie P, Haymaker C, Parra ER, Kim YU, Lazcano R, Gite S, Lorenzini D, Wistuba II, Tidwell RSS, Song X, Foo WC, Maru DM, Chun YS, Futreal A, Kee B, Menter D, Solis L, Tzeng CW, Parseghian C, Raghav K, Morris V, Chang CC, Jenq R, Tam A, Bernatchez C, Kopetz S, Vauthey JN, Overman MJ. Pilot Clinical Trial of Perioperative Durvalumab and Tremelimumab in the Treatment of Resectable Colorectal Cancer Liver Metastases. Clin Cancer Res 2021;27:3039-49. [PMID: 33811152 DOI: 10.1158/1078-0432.CCR-21-0163] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
40 Ding Y, Hao K, Li Z, Ma R, Zhou Y, Zhou Z, Wei M, Liao Y, Dai Y, Yang Y, Zhang X, Zhao L. c‐Fos separation from Lamin A/C by GDF15 promotes colon cancer invasion and metastasis in inflammatory microenvironment. J Cell Physiol 2020;235:4407-21. [DOI: 10.1002/jcp.29317] [Cited by in Crossref: 13] [Cited by in F6Publishing: 14] [Article Influence: 4.3] [Reference Citation Analysis]
41 DeDecker L, Coppedge B, Avelar-Barragan J, Karnes W, Whiteson K. Microbiome distinctions between the CRC carcinogenic pathways. Gut Microbes 2021;13:1854641. [PMID: 33446008 DOI: 10.1080/19490976.2020.1854641] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 6.0] [Reference Citation Analysis]
42 Haghi F, Goli E, Mirzaei B, Zeighami H. The association between fecal enterotoxigenic B. fragilis with colorectal cancer. BMC Cancer 2019;19:879. [PMID: 31488085 DOI: 10.1186/s12885-019-6115-1] [Cited by in Crossref: 35] [Cited by in F6Publishing: 33] [Article Influence: 11.7] [Reference Citation Analysis]
43 Frioux C, Singh D, Korcsmaros T, Hildebrand F. From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes. Comput Struct Biotechnol J 2020;18:1722-34. [PMID: 32670511 DOI: 10.1016/j.csbj.2020.06.028] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 5.5] [Reference Citation Analysis]
44 Khodaverdi N, Zeighami H, Jalilvand A, Haghi F, Hesami N. High frequency of enterotoxigenic Bacteroides fragilis and Enterococcus faecalis in the paraffin-embedded tissues of Iranian colorectal cancer patients. BMC Cancer 2021;21. [DOI: 10.1186/s12885-021-09110-x] [Reference Citation Analysis]
45 Song SD, Jeraldo P, Chen J, Chia N. Extreme value analysis of gut microbial alterations in colorectal cancer. Phys Rev E 2019;99:032413. [PMID: 30999532 DOI: 10.1103/PhysRevE.99.032413] [Reference Citation Analysis]
46 Brunner JD, Chia N. Minimizing the number of optimizations for efficient community dynamic flux balance analysis. PLoS Comput Biol 2020;16:e1007786. [PMID: 32991583 DOI: 10.1371/journal.pcbi.1007786] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
47 Auffray C, Griffin JL, Khoury MJ, Lupski JR, Schwab M. Ten years of Genome Medicine. Genome Med 2019;11:7. [PMID: 30767786 DOI: 10.1186/s13073-019-0618-x] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
48 Roberti MP, Rauber C, Kroemer G, Zitvogel L. Impact of the ileal microbiota on colon cancer. Semin Cancer Biol 2021:S1044-579X(21)00250-9. [PMID: 34624451 DOI: 10.1016/j.semcancer.2021.09.016] [Reference Citation Analysis]
49 Borroni EM, Qehajaj D, Farina FM, Yiu D, Bresalier RS, Chiriva-internati M, Mirandola L, Štifter S, Laghi L, Grizzi F. Fusobacterium nucleatum and the Immune System in Colorectal Cancer. Curr Colorectal Cancer Rep 2019;15:149-56. [DOI: 10.1007/s11888-019-00442-2] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 1.3] [Reference Citation Analysis]
50 Sikavi DR, Nguyen LH, Haruki K, Ugai T, Ma W, Wang DD, Thompson KN, Yan Y, Branck T, Wilkinson JE, Akimoto N, Zhong R, Lau MC, Mima K, Kosumi K, Morikawa T, Rimm EB, Garrett WS, Izard J, Cao Y, Song M, Huttenhower C, Ogino S, Chan AT. The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men. Clin Transl Gastroenterol 2021;12:e00338. [PMID: 34333506 DOI: 10.14309/ctg.0000000000000338] [Reference Citation Analysis]
51 Han S, Wu W, Da M, Xu J, Zhuang J, Zhang L, Zhang X, Yang X. Adequate Lymph Node Assessments and Investigation of Gut Microorganisms and Microbial Metabolites in Colorectal Cancer. Onco Targets Ther 2020;13:1893-906. [PMID: 32184624 DOI: 10.2147/OTT.S242017] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
52 Rivas-Domínguez A, Pastor N, Martínez-López L, Colón-Pérez J, Bermúdez B, Orta ML. The Role of DNA Damage Response in Dysbiosis-Induced Colorectal Cancer. Cells 2021;10:1934. [PMID: 34440703 DOI: 10.3390/cells10081934] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]