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For: Lau JT, Whelan FJ, Herath I, Lee CH, Collins SM, Bercik P, Surette MG. Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling. Genome Med. 2016;8:72. [PMID: 27363992 DOI: 10.1186/s13073-016-0327-7] [Cited by in Crossref: 105] [Cited by in F6Publishing: 97] [Article Influence: 17.5] [Reference Citation Analysis]
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5 Pinto-sanchez MI, Nardelli A, Borojevic R, De Palma G, Calo NC, Mccarville J, Caminero A, Basra D, Mordhorst A, Ignatova E, Hansen S, Uhde M, Norman GL, Murray JA, Smecuol E, Armstrong D, Bai JC, Schuppan D, Collins SM, Alaedini A, Moayyedi P, Verdu EF, Bercik P. Gluten-Free Diet Reduces Symptoms, Particularly Diarrhea, in Patients With Irritable Bowel Syndrome and Antigliadin IgG. Clinical Gastroenterology and Hepatology 2020. [DOI: 10.1016/j.cgh.2020.08.040] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 3.5] [Reference Citation Analysis]
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7 Moayyedi P, MacQueen G, Bernstein CN, Vanner S, Bercik P, Madsen KL, Surette M, Rioux JD, Dieleman LA, Verdú E, de Souza RJ, Otley A, Targownik L, Lavis J, Cunningham J, Marshall DA, Zelinsky S, Fernandes A. IMAGINE Network's Mind And Gut Interactions Cohort (MAGIC) Study: a protocol for a prospective observational multicentre cohort study in inflammatory bowel disease and irritable bowel syndrome. BMJ Open 2020;10:e041733. [PMID: 33087380 DOI: 10.1136/bmjopen-2020-041733] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
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9 Li Y, Sun H, Du B, Xu H. Gut Microbiota Shifts in Pup Athymic BALB/c Mice: An Updated Identification in Nude Mice. Animals (Basel) 2019;9:E151. [PMID: 30965569 DOI: 10.3390/ani9040151] [Reference Citation Analysis]
10 Suchodolski JS. Analysis of the gut microbiome in dogs and cats. Vet Clin Pathol 2021. [PMID: 34514619 DOI: 10.1111/vcp.13031] [Reference Citation Analysis]
11 Mullish B, Ghani R, Mcdonald J, Marchesi J. Faecal microbiota transplant for eradication of multidrug-resistant Enterobacteriaceae: a lesson in applying best practice? Re: ‘A five-day course of oral antibiotics followed by faecal transplantation to eradicate carriage of multidrug-resistant Enterobacteriaceae: A Randomized Clinical Trial’. Clinical Microbiology and Infection 2019;25:912-3. [DOI: 10.1016/j.cmi.2019.01.010] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
12 Sadowsky MJ, Staley C, Heiner C, Hall R, Kelly CR, Brandt L, Khoruts A. Analysis of gut microbiota - An ever changing landscape. Gut Microbes 2017;8:268-75. [PMID: 28051919 DOI: 10.1080/19490976.2016.1277313] [Cited by in Crossref: 17] [Cited by in F6Publishing: 14] [Article Influence: 3.4] [Reference Citation Analysis]
13 Chabé M, Lokmer A, Ségurel L. Gut Protozoa: Friends or Foes of the Human Gut Microbiota? Trends Parasitol 2017;33:925-34. [PMID: 28870496 DOI: 10.1016/j.pt.2017.08.005] [Cited by in Crossref: 73] [Cited by in F6Publishing: 61] [Article Influence: 14.6] [Reference Citation Analysis]
14 Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E, Stares MD, Dunn M, Mkandawire TT, Zhu A, Shao Y, Pike LJ, Louie T, Browne HP, Mitchell AL, Neville BA, Finn RD, Lawley TD. A human gut bacterial genome and culture collection for improved metagenomic analyses. Nat Biotechnol 2019;37:186-92. [PMID: 30718869 DOI: 10.1038/s41587-018-0009-7] [Cited by in Crossref: 190] [Cited by in F6Publishing: 135] [Article Influence: 63.3] [Reference Citation Analysis]
15 Whelan FJ, Rossi L, Stearns JC, Surette MG. Culture and Molecular Profiling of the Respiratory Tract Microbiota. Methods Mol Biol 2018;1849:49-61. [PMID: 30298247 DOI: 10.1007/978-1-4939-8728-3_4] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
16 Wang X, Undi RB, Ali N, Huycke MM. It takes a village: microbiota, parainflammation, paligenosis and bystander effects in colorectal cancer initiation. Dis Model Mech 2021;14:dmm048793. [PMID: 33969420 DOI: 10.1242/dmm.048793] [Reference Citation Analysis]
17 O'Toole PW, Flemer B. From Culture to High-Throughput Sequencing and Beyond: A Layperson's Guide to the "Omics" and Diagnostic Potential of the Microbiome. Gastroenterol Clin North Am 2017;46:9-17. [PMID: 28164855 DOI: 10.1016/j.gtc.2016.09.003] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
18 Bhinder G, Allaire JM, Garcia C, Lau JT, Chan JM, Ryz NR, Bosman ES, Graef FA, Crowley SM, Celiberto LS, Berkmann JC, Dyer RA, Jacobson K, Surette MG, Innis SM, Vallance BA. Milk Fat Globule Membrane Supplementation in Formula Modulates the Neonatal Gut Microbiome and Normalizes Intestinal Development. Sci Rep 2017;7:45274. [PMID: 28349941 DOI: 10.1038/srep45274] [Cited by in Crossref: 81] [Cited by in F6Publishing: 65] [Article Influence: 16.2] [Reference Citation Analysis]
19 Villa MM, Bloom RJ, Silverman JD, Durand HK, Jiang S, Wu A, Dallow EP, Huang S, You L, David LA. Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture. mSystems 2020;5:e00864-19. [PMID: 32606031 DOI: 10.1128/mSystems.00864-19] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 4.5] [Reference Citation Analysis]
20 White LS, Van den Bogaerde J, Kamm M. The gut microbiota: cause and cure of gut diseases. Med J Aust 2018;209:312-7. [PMID: 30257633 DOI: 10.5694/mja17.01067] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
21 Yousi F, Kainan C, Junnan Z, Chuanxing X, Lina F, Bangzhou Z, Jianlin R, Baishan F. Evaluation of the effects of four media on human intestinal microbiota culture in vitro. AMB Express 2019;9:69. [PMID: 31123874 DOI: 10.1186/s13568-019-0790-9] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
22 Eid HM, Wright ML, Anil Kumar NV, Qawasmeh A, Hassan STS, Mocan A, Nabavi SM, Rastrelli L, Atanasov AG, Haddad PS. Significance of Microbiota in Obesity and Metabolic Diseases and the Modulatory Potential by Medicinal Plant and Food Ingredients. Front Pharmacol 2017;8:387. [PMID: 28713266 DOI: 10.3389/fphar.2017.00387] [Cited by in Crossref: 54] [Cited by in F6Publishing: 47] [Article Influence: 10.8] [Reference Citation Analysis]
23 Bober JR, Beisel CL, Nair NU. Synthetic Biology Approaches to Engineer Probiotics and Members of the Human Microbiota for Biomedical Applications. Annu Rev Biomed Eng. 2018;20:277-300. [PMID: 29528686 DOI: 10.1146/annurev-bioeng-062117-121019] [Cited by in Crossref: 52] [Cited by in F6Publishing: 40] [Article Influence: 13.0] [Reference Citation Analysis]
24 Hoye BJ, Fenton A. Animal host-microbe interactions. J Anim Ecol 2018;87:315-9. [PMID: 29442372 DOI: 10.1111/1365-2656.12788] [Cited by in Crossref: 9] [Cited by in F6Publishing: 5] [Article Influence: 2.3] [Reference Citation Analysis]
25 Yin Y, Fan B, Liu W, Ren R, Chen H, Bai S, Zhu L, Sun G, Yang Y, Wang X. Investigation into the stability and culturability of Chinese enterotypes. Sci Rep 2017;7:7947. [PMID: 28801639 DOI: 10.1038/s41598-017-08478-w] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 2.0] [Reference Citation Analysis]
26 Chen YR, Zhou LZ, Fang ST, Long HY, Chen JY, Zhang GX. Isolation of Desulfovibrio spp. from human gut microbiota using a next-generation sequencing directed culture method. Lett Appl Microbiol 2019;68:553-61. [PMID: 30835854 DOI: 10.1111/lam.13149] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 3.0] [Reference Citation Analysis]
27 Poyet M, Groussin M, Gibbons SM, Avila-Pacheco J, Jiang X, Kearney SM, Perrotta AR, Berdy B, Zhao S, Lieberman TD, Swanson PK, Smith M, Roesemann S, Alexander JE, Rich SA, Livny J, Vlamakis H, Clish C, Bullock K, Deik A, Scott J, Pierce KA, Xavier RJ, Alm EJ. A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research. Nat Med 2019;25:1442-52. [PMID: 31477907 DOI: 10.1038/s41591-019-0559-3] [Cited by in Crossref: 106] [Cited by in F6Publishing: 77] [Article Influence: 35.3] [Reference Citation Analysis]
28 Miranda PM, De Palma G, Serkis V, Lu J, Louis-Auguste MP, McCarville JL, Verdu EF, Collins SM, Bercik P. High salt diet exacerbates colitis in mice by decreasing Lactobacillus levels and butyrate production. Microbiome 2018;6:57. [PMID: 29566748 DOI: 10.1186/s40168-018-0433-4] [Cited by in Crossref: 80] [Cited by in F6Publishing: 80] [Article Influence: 20.0] [Reference Citation Analysis]
29 Medvecky M, Cejkova D, Polansky O, Karasova D, Kubasova T, Cizek A, Rychlik I. Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures. BMC Genomics 2018;19:561. [PMID: 30064352 DOI: 10.1186/s12864-018-4959-4] [Cited by in Crossref: 43] [Cited by in F6Publishing: 33] [Article Influence: 10.8] [Reference Citation Analysis]
30 Ahn Y, Jung JY, Kweon O, Veach BT, Khare S, Gokulan K, Piñeiro SA, Cerniglia CE. Impact of Chronic Tetracycline Exposure on Human Intestinal Microbiota in a Continuous Flow Bioreactor Model. Antibiotics (Basel) 2021;10:886. [PMID: 34438936 DOI: 10.3390/antibiotics10080886] [Reference Citation Analysis]
31 Vuotto C, Battistini L, Caltagirone C, Borsellino G. Gut Microbiota and Disorders of the Central Nervous System. Neuroscientist 2020;26:487-502. [PMID: 32441219 DOI: 10.1177/1073858420918826] [Cited by in Crossref: 5] [Cited by in F6Publishing: 6] [Article Influence: 2.5] [Reference Citation Analysis]
32 SanMiguel AJ, Meisel JS, Horwinski J, Zheng Q, Grice EA. Topical Antimicrobial Treatments Can Elicit Shifts to Resident Skin Bacterial Communities and Reduce Colonization by Staphylococcus aureus Competitors. Antimicrob Agents Chemother 2017;61:e00774-17. [PMID: 28630195 DOI: 10.1128/AAC.00774-17] [Cited by in Crossref: 27] [Cited by in F6Publishing: 17] [Article Influence: 5.4] [Reference Citation Analysis]
33 Adhikari B, Kwon YM. Cell density alters bacterial community structure in culture-enriched 16S rRNA gene microbiota profiling. BMC Res Notes 2020;13:269. [PMID: 32493423 DOI: 10.1186/s13104-020-05113-2] [Reference Citation Analysis]
34 Bellali S, Lagier JC, Million M, Anani H, Haddad G, Francis R, Kuete Yimagou E, Khelaifia S, Levasseur A, Raoult D, Bou Khalil J. Running after ghosts: are dead bacteria the dark matter of the human gut microbiota? Gut Microbes 2021;13:1-12. [PMID: 33757378 DOI: 10.1080/19490976.2021.1897208] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
35 Kohl KD. Ecological and evolutionary mechanisms underlying patterns of phylosymbiosis in host-associated microbial communities. Philos Trans R Soc Lond B Biol Sci 2020;375:20190251. [PMID: 32200746 DOI: 10.1098/rstb.2019.0251] [Cited by in Crossref: 15] [Cited by in F6Publishing: 12] [Article Influence: 7.5] [Reference Citation Analysis]
36 Hou F, Chang Y, Huang Z, Han N, Bin L, Deng H, Li Z, Pan Z, Ding L, Gao H, Yang R, Zhi F, Bi Y. Application of LpxC enzyme inhibitor to inhibit some fast-growing bacteria in human gut bacterial culturomics. BMC Microbiol 2019;19:308. [PMID: 31888576 DOI: 10.1186/s12866-019-1681-6] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
37 Adak A, Khan MR. An insight into gut microbiota and its functionalities. Cell Mol Life Sci 2019;76:473-93. [DOI: 10.1007/s00018-018-2943-4] [Cited by in Crossref: 71] [Cited by in F6Publishing: 62] [Article Influence: 17.8] [Reference Citation Analysis]
38 Raymond F, Boissinot M, Ouameur AA, Déraspe M, Plante PL, Kpanou SR, Bérubé È, Huletsky A, Roy PH, Ouellette M, Bergeron MG, Corbeil J. Culture-enriched human gut microbiomes reveal core and accessory resistance genes. Microbiome 2019;7:56. [PMID: 30953542 DOI: 10.1186/s40168-019-0669-7] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
39 Bian X, Garber JM, Cooper KK, Huynh S, Jones J, Mills MK, Rafala D, Nasrin D, Kotloff KL, Parker CT, Tennant SM, Miller WG, Szymanski CM. Campylobacter Abundance in Breastfed Infants and Identification of a New Species in the Global Enterics Multicenter Study. mSphere 2020;5:e00735-19. [PMID: 31941810 DOI: 10.1128/mSphere.00735-19] [Cited by in Crossref: 13] [Cited by in F6Publishing: 8] [Article Influence: 6.5] [Reference Citation Analysis]
40 Nagamine T, Ido Y, Nakamura M, Okamura T. 4G-β-D-galactosylsucrose as a prebiotics may improve underweight in inpatients with schizophrenia. Biosci Microbiota Food Health 2018;37:45-7. [PMID: 29662737 DOI: 10.12938/bmfh.17-016] [Cited by in Crossref: 8] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
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42 Allegretti JR, Mullish BH, Kelly C, Fischer M. The evolution of the use of faecal microbiota transplantation and emerging therapeutic indications. Lancet. 2019;394:420-431. [PMID: 31379333 DOI: 10.1016/s0140-6736(19)31266-8] [Cited by in Crossref: 108] [Cited by in F6Publishing: 55] [Article Influence: 36.0] [Reference Citation Analysis]
43 Garg N, Luzzatto-Knaan T, Melnik AV, Caraballo-Rodríguez AM, Floros DJ, Petras D, Gregor R, Dorrestein PC, Phelan VV. Natural products as mediators of disease. Nat Prod Rep 2017;34:194-219. [PMID: 27874907 DOI: 10.1039/c6np00063k] [Cited by in Crossref: 45] [Cited by in F6Publishing: 15] [Article Influence: 7.5] [Reference Citation Analysis]
44 Rychlik I. Composition and Function of Chicken Gut Microbiota. Animals (Basel) 2020;10:E103. [PMID: 31936291 DOI: 10.3390/ani10010103] [Cited by in Crossref: 35] [Cited by in F6Publishing: 36] [Article Influence: 17.5] [Reference Citation Analysis]
45 Stevens V, Thijs S, Vangronsveld J. Diversity and plant growth-promoting potential of (un)culturable bacteria in the Hedera helix phylloplane. BMC Microbiol 2021;21:66. [PMID: 33639859 DOI: 10.1186/s12866-021-02119-z] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
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51 Crhanova M, Karasova D, Juricova H, Matiasovicova J, Jahodarova E, Kubasova T, Seidlerova Z, Cizek A, Rychlik I. Systematic Culturomics Shows that Half of Chicken Caecal Microbiota Members can be Grown in Vitro Except for Two Lineages of Clostridiales and a Single Lineage of Bacteroidetes. Microorganisms 2019;7:E496. [PMID: 31661802 DOI: 10.3390/microorganisms7110496] [Cited by in Crossref: 13] [Cited by in F6Publishing: 11] [Article Influence: 4.3] [Reference Citation Analysis]
52 Aggarwala V, Mogno I, Li Z, Yang C, Britton GJ, Chen-Liaw A, Mitcham J, Bongers G, Gevers D, Clemente JC, Colombel JF, Grinspan A, Faith J. Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes. Nat Microbiol 2021;6:1309-18. [PMID: 34580445 DOI: 10.1038/s41564-021-00966-0] [Cited by in Crossref: 3] [Article Influence: 3.0] [Reference Citation Analysis]
53 Juricova H, Matiasovicova J, Kubasova T, Cejkova D, Rychlik I. The distribution of antibiotic resistance genes in chicken gut microbiota commensals. Sci Rep 2021;11:3290. [PMID: 33558560 DOI: 10.1038/s41598-021-82640-3] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
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