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For: Yaari G, Kleinstein SH. Practical guidelines for B-cell receptor repertoire sequencing analysis. Genome Med 2015;7:121. [PMID: 26589402 DOI: 10.1186/s13073-015-0243-2] [Cited by in Crossref: 145] [Cited by in F6Publishing: 115] [Article Influence: 20.7] [Reference Citation Analysis]
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18 López-Santibáñez-Jácome L, Avendaño-Vázquez SE, Flores-Jasso CF. The Pipeline Repertoire for Ig-Seq Analysis. Front Immunol 2019;10:899. [PMID: 31114573 DOI: 10.3389/fimmu.2019.00899] [Cited by in Crossref: 13] [Cited by in F6Publishing: 10] [Article Influence: 4.3] [Reference Citation Analysis]
19 Elhanati Y, Sethna Z, Callan CG Jr, Mora T, Walczak AM. Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination. Immunol Rev 2018;284:167-79. [PMID: 29944757 DOI: 10.1111/imr.12665] [Cited by in Crossref: 64] [Cited by in F6Publishing: 43] [Article Influence: 21.3] [Reference Citation Analysis]
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22 Ohm-Laursen L, Meng H, Chen J, Zhou JQ, Corrigan CJ, Gould HJ, Kleinstein SH. Local Clonal Diversification and Dissemination of B Lymphocytes in the Human Bronchial Mucosa. Front Immunol 2018;9:1976. [PMID: 30245687 DOI: 10.3389/fimmu.2018.01976] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
23 Fu Y, Wu PH, Beane T, Zamore PD, Weng Z. Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers. BMC Genomics 2018;19:531. [PMID: 30001700 DOI: 10.1186/s12864-018-4933-1] [Cited by in Crossref: 57] [Cited by in F6Publishing: 46] [Article Influence: 14.3] [Reference Citation Analysis]
24 Mikocziova I, Gidoni M, Lindeman I, Peres A, Snir O, Yaari G, Sollid LM. Polymorphisms in human immunoglobulin heavy chain variable genes and their upstream regions. Nucleic Acids Res 2020;48:5499-510. [PMID: 32365177 DOI: 10.1093/nar/gkaa310] [Cited by in Crossref: 13] [Cited by in F6Publishing: 5] [Article Influence: 6.5] [Reference Citation Analysis]
25 Thörnqvist L, Ohlin M. The functional 3'-end of immunoglobulin heavy chain variable (IGHV) genes. Mol Immunol 2018;96:61-8. [PMID: 29499482 DOI: 10.1016/j.molimm.2018.02.013] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 2.5] [Reference Citation Analysis]
26 Hu X, Zhang J, Wang J, Fu J, Li T, Zheng X, Wang B, Gu S, Jiang P, Fan J, Ying X, Zhang J, Carroll MC, Wucherpfennig KW, Hacohen N, Zhang F, Zhang P, Liu JS, Li B, Liu XS. Landscape of B cell immunity and related immune evasion in human cancers. Nat Genet 2019;51:560-7. [PMID: 30742113 DOI: 10.1038/s41588-018-0339-x] [Cited by in Crossref: 45] [Cited by in F6Publishing: 37] [Article Influence: 15.0] [Reference Citation Analysis]
27 Manso TC, Groenner-Penna M, Minozzo JC, Antunes BC, Ippolito GC, Molina F, Felicori LF. Next-generation sequencing reveals new insights about gene usage and CDR-H3 composition in the horse antibody repertoire. Mol Immunol 2019;105:251-9. [PMID: 30562645 DOI: 10.1016/j.molimm.2018.11.017] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
28 Brown AJ, Snapkov I, Akbar R, Pavlović M, Miho E, Sandve GK, Greiff V. Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires. Mol Syst Des Eng 2019;4:701-36. [DOI: 10.1039/c9me00071b] [Cited by in Crossref: 26] [Article Influence: 8.7] [Reference Citation Analysis]
29 Davey MS, Willcox CR, Baker AT, Hunter S, Willcox BE. Recasting Human Vδ1 Lymphocytes in an Adaptive Role. Trends Immunol 2018;39:446-59. [PMID: 29680462 DOI: 10.1016/j.it.2018.03.003] [Cited by in Crossref: 28] [Cited by in F6Publishing: 29] [Article Influence: 7.0] [Reference Citation Analysis]
30 Altan-bonnet G, Mora T, Walczak AM. Quantitative immunology for physicists. Physics Reports 2020;849:1-83. [DOI: 10.1016/j.physrep.2020.01.001] [Cited by in Crossref: 19] [Cited by in F6Publishing: 1] [Article Influence: 9.5] [Reference Citation Analysis]
31 Upadhyay AA, Kauffman RC, Wolabaugh AN, Cho A, Patel NB, Reiss SM, Havenar-Daughton C, Dawoud RA, Tharp GK, Sanz I, Pulendran B, Crotty S, Lee FE, Wrammert J, Bosinger SE. BALDR: a computational pipeline for paired heavy and light chain immunoglobulin reconstruction in single-cell RNA-seq data. Genome Med 2018;10:20. [PMID: 29558968 DOI: 10.1186/s13073-018-0528-3] [Cited by in Crossref: 33] [Cited by in F6Publishing: 27] [Article Influence: 8.3] [Reference Citation Analysis]
32 Meng W, Zhang B, Schwartz GW, Rosenfeld AM, Ren D, Thome JJC, Carpenter DJ, Matsuoka N, Lerner H, Friedman AL, Granot T, Farber DL, Shlomchik MJ, Hershberg U, Luning Prak ET. An atlas of B-cell clonal distribution in the human body. Nat Biotechnol 2017;35:879-84. [PMID: 28829438 DOI: 10.1038/nbt.3942] [Cited by in Crossref: 81] [Cited by in F6Publishing: 69] [Article Influence: 16.2] [Reference Citation Analysis]
33 Csepregi L, Ehling RA, Wagner B, Reddy ST. Immune Literacy: Reading, Writing, and Editing Adaptive Immunity. iScience 2020;23:101519. [PMID: 32905040 DOI: 10.1016/j.isci.2020.101519] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 2.5] [Reference Citation Analysis]
34 Liu X, Wu J. History, applications, and challenges of immune repertoire research. Cell Biol Toxicol. 2018;34:441-457. [PMID: 29484527 DOI: 10.1007/s10565-018-9426-0] [Cited by in Crossref: 30] [Cited by in F6Publishing: 27] [Article Influence: 7.5] [Reference Citation Analysis]
35 Rosenfeld AM, Meng W, Luning Prak ET, Hershberg U. ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data. Front Immunol 2018;9:2107. [PMID: 30298069 DOI: 10.3389/fimmu.2018.02107] [Cited by in Crossref: 24] [Cited by in F6Publishing: 19] [Article Influence: 6.0] [Reference Citation Analysis]
36 Bueno C, Ballerini P, Varela I, Menendez P, Bashford-Rogers R. Shared D-J rearrangements reveal cell of origin of TCF3-ZNF384 and PTPN11 mutations in monozygotic twins with concordant BCP-ALL. Blood 2020;136:1108-11. [PMID: 32609826 DOI: 10.1182/blood.2020006604] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
37 Lindeman I, Zhou C, Eggesbø LM, Miao Z, Polak J, Lundin KEA, Jahnsen J, Qiao SW, Iversen R, Sollid LM. Longevity, clonal relationship, and transcriptional program of celiac disease-specific plasma cells. J Exp Med 2021;218:e20200852. [PMID: 33095260 DOI: 10.1084/jem.20200852] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
38 Shlemov A, Bankevich S, Bzikadze A, Turchaninova MA, Safonova Y, Pevzner PA. Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Reads. J Immunol 2017;199:3369-80. [PMID: 28978691 DOI: 10.4049/jimmunol.1700485] [Cited by in Crossref: 22] [Cited by in F6Publishing: 14] [Article Influence: 4.4] [Reference Citation Analysis]
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40 Bragazzi NL, Gianfredi V, Villarini M, Rosselli R, Nasr A, Hussein A, Martini M, Behzadifar M. Vaccines Meet Big Data: State-of-the-Art and Future Prospects. From the Classical 3Is ("Isolate-Inactivate-Inject") Vaccinology 1.0 to Vaccinology 3.0, Vaccinomics, and Beyond: A Historical Overview. Front Public Health 2018;6:62. [PMID: 29556492 DOI: 10.3389/fpubh.2018.00062] [Cited by in Crossref: 28] [Cited by in F6Publishing: 25] [Article Influence: 7.0] [Reference Citation Analysis]
41 Bolen CR, Rubelt F, Vander Heiden JA, Davis MM. The Repertoire Dissimilarity Index as a method to compare lymphocyte receptor repertoires. BMC Bioinformatics 2017;18:155. [PMID: 28264647 DOI: 10.1186/s12859-017-1556-5] [Cited by in Crossref: 24] [Cited by in F6Publishing: 16] [Article Influence: 4.8] [Reference Citation Analysis]
42 Seah YFS, Hu H, Merten CA. Microfluidic single-cell technology in immunology and antibody screening. Molecular Aspects of Medicine 2018;59:47-61. [DOI: 10.1016/j.mam.2017.09.004] [Cited by in Crossref: 39] [Cited by in F6Publishing: 34] [Article Influence: 9.8] [Reference Citation Analysis]
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50 Khavrutskii IV, Chaudhury S, Stronsky SM, Lee DW, Benko JG, Wallqvist A, Bavari S, Cooper CL. Quantitative Analysis of Repertoire-Scale Immunoglobulin Properties in Vaccine-Induced B-Cell Responses. Front Immunol 2017;8:910. [PMID: 28855898 DOI: 10.3389/fimmu.2017.00910] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.2] [Reference Citation Analysis]
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56 Oyola SO, Henson SP, Nzau B, Kibwana E, Nene V. Access to ultra-long IgG CDRH3 bovine antibody sequences using short read sequencing technology. Mol Immunol 2021;139:97-105. [PMID: 34464839 DOI: 10.1016/j.molimm.2021.08.017] [Reference Citation Analysis]
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