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For: Walsh CJ, Guinane CM, Hill C, Ross RP, O'Toole PW, Cotter PD. In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project's reference genome database. BMC Microbiol 2015;15:183. [PMID: 26377179 DOI: 10.1186/s12866-015-0515-4] [Cited by in Crossref: 65] [Cited by in F6Publishing: 63] [Article Influence: 9.3] [Reference Citation Analysis]
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8 Collins FWJ, Mesa-Pereira B, O'Connor PM, Rea MC, Hill C, Ross RP. Reincarnation of Bacteriocins From the Lactobacillus Pangenomic Graveyard. Front Microbiol 2018;9:1298. [PMID: 30013519 DOI: 10.3389/fmicb.2018.01298] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 1.8] [Reference Citation Analysis]
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10 Hussein WE, Abdelhamid AG, Rocha-Mendoza D, García-Cano I, Yousef AE. Assessment of Safety and Probiotic Traits of Enterococcus durans OSY-EGY, Isolated From Egyptian Artisanal Cheese, Using Comparative Genomics and Phenotypic Analyses. Front Microbiol 2020;11:608314. [PMID: 33362752 DOI: 10.3389/fmicb.2020.608314] [Cited by in Crossref: 2] [Article Influence: 1.0] [Reference Citation Analysis]
11 Goldbeck O, Desef DN, Ovchinnikov KV, Perez-Garcia F, Christmann J, Sinner P, Crauwels P, Weixler D, Cao P, Becker J, Kohlstedt M, Kager J, Eikmanns BJ, Seibold GM, Herwig C, Wittmann C, Bar NS, Diep DB, Riedel CU. Establishing recombinant production of pediocin PA-1 in Corynebacterium glutamicum. Metab Eng 2021;68:34-45. [PMID: 34492380 DOI: 10.1016/j.ymben.2021.09.002] [Reference Citation Analysis]
12 Culligan EP, Sleator RD. Antibiotics v2.0: computational and synthetic biology approaches to combat antibiotic resistance. Future Microbiol 2017;12:267-9. [PMID: 28287301 DOI: 10.2217/fmb-2017-0005] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.4] [Reference Citation Analysis]
13 Hernández-Quiroz F, Nirmalkar K, Villalobos-Flores LE, Murugesan S, Cruz-Narváez Y, Rico-Arzate E, Hoyo-Vadillo C, Chavez-Carbajal A, Pizano-Zárate ML, García-Mena J. Influence of moderate beer consumption on human gut microbiota and its impact on fasting glucose and β-cell function. Alcohol 2020;85:77-94. [PMID: 31201859 DOI: 10.1016/j.alcohol.2019.05.006] [Cited by in Crossref: 23] [Cited by in F6Publishing: 18] [Article Influence: 11.5] [Reference Citation Analysis]
14 Azad RK, Shulaev V. Metabolomics technology and bioinformatics for precision medicine. Brief Bioinform 2019;20:1957-71. [PMID: 29304189 DOI: 10.1093/bib/bbx170] [Cited by in Crossref: 20] [Cited by in F6Publishing: 17] [Article Influence: 10.0] [Reference Citation Analysis]
15 Lozada-fernández VV, deLeon O, Kellogg SL, Saravia FL, Hadiono MA, Atkinson SN, Grobe JL, Kirby JR, Suez J. Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice. mSystems. [DOI: 10.1128/msystems.00230-21] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
16 Ducarmon QR, Zwittink RD, Hornung BVH, van Schaik W, Young VB, Kuijper EJ. Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection. Microbiol Mol Biol Rev 2019;83:e00007-19. [PMID: 31167904 DOI: 10.1128/MMBR.00007-19] [Cited by in Crossref: 78] [Cited by in F6Publishing: 48] [Article Influence: 26.0] [Reference Citation Analysis]
17 Dean SN, Rimmer MA, Turner KB, Phillips DA, Caruana JC, Hervey WJ 4th, Leary DH, Walper SA. Lactobacillus acidophilus Membrane Vesicles as a Vehicle of Bacteriocin Delivery. Front Microbiol 2020;11:710. [PMID: 32425905 DOI: 10.3389/fmicb.2020.00710] [Cited by in Crossref: 14] [Cited by in F6Publishing: 12] [Article Influence: 7.0] [Reference Citation Analysis]
18 Hudson GA, Burkhart BJ, DiCaprio AJ, Schwalen CJ, Kille B, Pogorelov TV, Mitchell DA. Bioinformatic Mapping of Radical S-Adenosylmethionine-Dependent Ribosomally Synthesized and Post-Translationally Modified Peptides Identifies New Cα, Cβ, and Cγ-Linked Thioether-Containing Peptides. J Am Chem Soc 2019;141:8228-38. [PMID: 31059252 DOI: 10.1021/jacs.9b01519] [Cited by in Crossref: 35] [Cited by in F6Publishing: 37] [Article Influence: 11.7] [Reference Citation Analysis]
19 Gontijo MTP, Silva JS, Vidigal PMP, Martin JGP. Phylogenetic distribution of the bacteriocin repertoire of lactic acid bacteria species associated with artisanal cheese. Food Res Int 2020;128:108783. [PMID: 31955749 DOI: 10.1016/j.foodres.2019.108783] [Cited by in Crossref: 6] [Cited by in F6Publishing: 7] [Article Influence: 2.0] [Reference Citation Analysis]
20 Ye J, Wu W, Li Y, Li L. Influences of the Gut Microbiota on DNA Methylation and Histone Modification. Dig Dis Sci 2017;62:1155-64. [DOI: 10.1007/s10620-017-4538-6] [Cited by in Crossref: 30] [Cited by in F6Publishing: 27] [Article Influence: 6.0] [Reference Citation Analysis]
21 Banerjee A, Pradhan LK, Sahoo PK, Jena KK, Chauhan NR, Chauhan S, Das SK. Unravelling the potential of gut microbiota in sustaining brain health and their current prospective towards development of neurotherapeutics. Arch Microbiol 2021;203:2895-910. [PMID: 33763767 DOI: 10.1007/s00203-021-02276-9] [Reference Citation Analysis]
22 Yin X, Heeney D, Srisengfa Y, Golomb B, Griffey S, Marco M. Bacteriocin biosynthesis contributes to the anti-inflammatory capacities of probiotic Lactobacillus plantarum. Benef Microbes 2018;9:333-44. [PMID: 29065706 DOI: 10.3920/BM2017.0096] [Cited by in Crossref: 14] [Cited by in F6Publishing: 11] [Article Influence: 2.8] [Reference Citation Analysis]
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25 Wosinska L, Walsh CJ, O’connor PM, Lawton EM, Cotter PD, Guinane CM, O’sullivan O. In Vitro and In Silico Based Approaches to Identify Potential Novel Bacteriocins from the Athlete Gut Microbiome of an Elite Athlete Cohort. Microorganisms 2022;10:701. [DOI: 10.3390/microorganisms10040701] [Reference Citation Analysis]
26 Hegarty JW, Guinane CM, Ross RP, Hill C, Cotter PD. Bacteriocin production: a relatively unharnessed probiotic trait? F1000Res 2016;5:2587. [PMID: 27853525 DOI: 10.12688/f1000research.9615.1] [Cited by in Crossref: 55] [Cited by in F6Publishing: 48] [Article Influence: 9.2] [Reference Citation Analysis]
27 Kumariya R, Garsa AK, Rajput YS, Sood SK, Akhtar N, Patel S. Bacteriocins: Classification, synthesis, mechanism of action and resistance development in food spoilage causing bacteria. Microb Pathog. 2019;128:171-177. [PMID: 30610901 DOI: 10.1016/j.micpath.2019.01.002] [Cited by in Crossref: 79] [Cited by in F6Publishing: 56] [Article Influence: 26.3] [Reference Citation Analysis]
28 Blandino G, Inturri R, Lazzara F, Di Rosa M, Malaguarnera L. Impact of gut microbiota on diabetes mellitus. Diabetes Metab. 2016;42:303-315. [PMID: 27179626 DOI: 10.1016/j.diabet.2016.04.004] [Cited by in Crossref: 96] [Cited by in F6Publishing: 93] [Article Influence: 16.0] [Reference Citation Analysis]
29 Mills S, Stanton C, Lane JA, Smith GJ, Ross RP. Precision Nutrition and the Microbiome, Part I: Current State of the Science. Nutrients. 2019;11:923. [PMID: 31022973 DOI: 10.3390/nu11040923] [Cited by in Crossref: 77] [Cited by in F6Publishing: 63] [Article Influence: 25.7] [Reference Citation Analysis]
30 Rajakovich LJ, Balskus EP. Metabolic functions of the human gut microbiota: the role of metalloenzymes. Nat Prod Rep 2019;36:593-625. [PMID: 30452039 DOI: 10.1039/c8np00074c] [Cited by in Crossref: 29] [Cited by in F6Publishing: 10] [Article Influence: 9.7] [Reference Citation Analysis]
31 Mohamed RS, Marrez DA, Salem SH, Zaghloul AH, Ashoush IS, Farrag ARH, Abdel-Salam AM. Hypoglycemic, hypolipidemic and antioxidant effects of green sprouts juice and functional dairy micronutrients against streptozotocin-induced oxidative stress and diabetes in rats. Heliyon 2019;5:e01197. [PMID: 30839934 DOI: 10.1016/j.heliyon.2019.e01197] [Cited by in Crossref: 9] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
32 Alkhalili RN, Canbäck B. Identification of Putative Novel Class-I Lanthipeptides in Firmicutes: A Combinatorial In Silico Analysis Approach Performed on Genome Sequenced Bacteria and a Close Inspection of Z-Geobacillin Lanthipeptide Biosynthesis Gene Cluster of the Thermophilic Geobacillus sp. Strain ZGt-1. Int J Mol Sci 2018;19:E2650. [PMID: 30200662 DOI: 10.3390/ijms19092650] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
33 Costa SS, Lago LAB, Silva A, Graças DAD, Lameira J, Baraúna RA. Diversity of bacteriocins in the microbiome of the Tucuruí Hydroelectric Power Plant water reservoir and three-dimensional structure prediction of a zoocin. Genet Mol Biol 2022;45:e20210204. [PMID: 35037933 DOI: 10.1590/1678-4685-GMB-2021-0204] [Reference Citation Analysis]
34 Hussein WE, Huang E, Ozturk I, Somogyi Á, Yang X, Liu B, Yousef AE. Genome-Guided Mass Spectrometry Expedited the Discovery of Paraplantaricin TC318, a Lantibiotic Produced by Lactobacillus paraplantarum Strain Isolated From Cheese. Front Microbiol 2020;11:1381. [PMID: 32760356 DOI: 10.3389/fmicb.2020.01381] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
35 Rolhion N, Chassaing B. When pathogenic bacteria meet the intestinal microbiota. Philos Trans R Soc Lond B Biol Sci 2016;371:20150504. [PMID: 27672153 DOI: 10.1098/rstb.2015.0504] [Cited by in Crossref: 56] [Cited by in F6Publishing: 50] [Article Influence: 11.2] [Reference Citation Analysis]
36 Blanco-Míguez A, Fdez-Riverola F, Sánchez B, Lourenço A. Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. Brief Bioinform 2019;20:1032-56. [PMID: 29186315 DOI: 10.1093/bib/bbx156] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 4.0] [Reference Citation Analysis]
37 Garcia-Gutierrez E, Mayer MJ, Cotter PD, Narbad A. Gut microbiota as a source of novel antimicrobials. Gut Microbes 2019;10:1-21. [PMID: 29584555 DOI: 10.1080/19490976.2018.1455790] [Cited by in Crossref: 67] [Cited by in F6Publishing: 59] [Article Influence: 16.8] [Reference Citation Analysis]
38 Culligan EP, Sleator RD. Advances in the Microbiome: Applications to Clostridium difficile Infection. J Clin Med 2016;5:E83. [PMID: 27657145 DOI: 10.3390/jcm5090083] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 1.7] [Reference Citation Analysis]
39 Singh V, Rao A. Distribution and diversity of glycocin biosynthesis gene clusters beyond Firmicutes. Glycobiology 2021;31:89-102. [PMID: 32614945 DOI: 10.1093/glycob/cwaa061] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
40 Javůrková VG, Kreisinger J, Procházka P, Požgayová M, Ševčíková K, Brlík V, Adamík P, Heneberg P, Porkert J. Unveiled feather microcosm: feather microbiota of passerine birds is closely associated with host species identity and bacteriocin-producing bacteria. ISME J 2019;13:2363-76. [PMID: 31127178 DOI: 10.1038/s41396-019-0438-4] [Cited by in Crossref: 14] [Cited by in F6Publishing: 13] [Article Influence: 4.7] [Reference Citation Analysis]
41 Gherghisan-Filip C, Saalbach G, Hatziioanou D, Narbad A, Mayer MJ. Processing and Structure of the Lantibiotic Peptide Nso From the Human Gut Bacterium Blautia obeum A2-162 analysed by Mass Spectrometry. Sci Rep 2018;8:10077. [PMID: 29973605 DOI: 10.1038/s41598-018-28248-6] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 1.3] [Reference Citation Analysis]
42 Teng K, Huang F, Liu Y, Wang Y, Xia T, Yun F, Zhong J. Food and gut originated bacteriocins involved in gut microbe-host interactions. Crit Rev Microbiol 2022;:1-13. [PMID: 35713699 DOI: 10.1080/1040841X.2022.2082860] [Reference Citation Analysis]
43 Twomey E, Hill C, Field D, Begley M. Recipe for Success: Suggestions and Recommendations for the Isolation and Characterisation of Bacteriocins. Int J Microbiol 2021;2021:9990635. [PMID: 34257667 DOI: 10.1155/2021/9990635] [Reference Citation Analysis]
44 de Sousa BL, Azevedo AC, Oliveira IMF, Bento CBP, Santana MF, Bazzolli DMS, Mantovani HC. PCR screening reveals abundance of bovicin-like bacteriocins among ruminal Streptococcus spp. isolated from beef and dairy cattle. J Appl Microbiol 2021. [PMID: 33714234 DOI: 10.1111/jam.15069] [Reference Citation Analysis]
45 Mills S, Ross RP, Hill C. Bacteriocins and bacteriophage; a narrow-minded approach to food and gut microbiology. FEMS Microbiol Rev 2017;41:S129-53. [PMID: 28830091 DOI: 10.1093/femsre/fux022] [Cited by in Crossref: 39] [Cited by in F6Publishing: 34] [Article Influence: 9.8] [Reference Citation Analysis]
46 Venegas-Ortega MG, Flores-Gallegos AC, Martínez-Hernández JL, Aguilar CN, Nevárez-Moorillón GV. Production of Bioactive Peptides from Lactic Acid Bacteria: A Sustainable Approach for Healthier Foods. Compr Rev Food Sci Food Saf 2019;18:1039-51. [PMID: 33336997 DOI: 10.1111/1541-4337.12455] [Cited by in Crossref: 26] [Cited by in F6Publishing: 19] [Article Influence: 8.7] [Reference Citation Analysis]
47 Egan K, Field D, Ross RP, Cotter PD, Hill C. In silico Prediction and Exploration of Potential Bacteriocin Gene Clusters Within the Bacterial Genus Geobacillus. Front Microbiol 2018;9:2116. [PMID: 30298056 DOI: 10.3389/fmicb.2018.02116] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 2.5] [Reference Citation Analysis]
48 Sandiford SK. Genome database mining for the discovery of novel lantibiotics. Expert Opin Drug Discov 2017;12:489-95. [PMID: 28306363 DOI: 10.1080/17460441.2017.1303475] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.2] [Reference Citation Analysis]
49 Lynch D, O'Connor PM, Cotter PD, Hill C, Field D, Begley M. Identification and characterisation of capidermicin, a novel bacteriocin produced by Staphylococcus capitis. PLoS One 2019;14:e0223541. [PMID: 31618225 DOI: 10.1371/journal.pone.0223541] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 3.0] [Reference Citation Analysis]
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51 Collins FWJ, O'Connor PM, O'Sullivan O, Gómez-Sala B, Rea MC, Hill C, Ross RP. Bacteriocin Gene-Trait matching across the complete Lactobacillus Pan-genome. Sci Rep 2017;7:3481. [PMID: 28615683 DOI: 10.1038/s41598-017-03339-y] [Cited by in Crossref: 33] [Cited by in F6Publishing: 33] [Article Influence: 6.6] [Reference Citation Analysis]
52 Ikeda-Ohtsubo W, Brugman S, Warden CH, Rebel JMJ, Folkerts G, Pieterse CMJ. How Can We Define "Optimal Microbiota?": A Comparative Review of Structure and Functions of Microbiota of Animals, Fish, and Plants in Agriculture. Front Nutr 2018;5:90. [PMID: 30333981 DOI: 10.3389/fnut.2018.00090] [Cited by in Crossref: 21] [Cited by in F6Publishing: 19] [Article Influence: 5.3] [Reference Citation Analysis]
53 Field D, Ross RP, Hill C. Developing bacteriocins of lactic acid bacteria into next generation biopreservatives. Current Opinion in Food Science 2018;20:1-6. [DOI: 10.1016/j.cofs.2018.02.004] [Cited by in Crossref: 36] [Cited by in F6Publishing: 13] [Article Influence: 9.0] [Reference Citation Analysis]
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56 Leite AZ, Rodrigues NC, Gonzaga MI, Paiolo JCC, de Souza CA, Stefanutto NAV, Omori WP, Pinheiro DG, Brisotti JL, Matheucci Junior E, Mariano VS, de Oliveira GLV. Detection of Increased Plasma Interleukin-6 Levels and Prevalence of Prevotella copri and Bacteroides vulgatus in the Feces of Type 2 Diabetes Patients. Front Immunol 2017;8:1107. [PMID: 28966614 DOI: 10.3389/fimmu.2017.01107] [Cited by in Crossref: 52] [Cited by in F6Publishing: 49] [Article Influence: 10.4] [Reference Citation Analysis]
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58 Othoum G, Bougouffa S, Razali R, Bokhari A, Alamoudi S, Antunes A, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Lafi FF, Essack M. In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters. BMC Genomics 2018;19:382. [PMID: 29788916 DOI: 10.1186/s12864-018-4796-5] [Cited by in Crossref: 10] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
59 Sitaraman R. Prokaryotic horizontal gene transfer within the human holobiont: ecological-evolutionary inferences, implications and possibilities. Microbiome 2018;6:163. [PMID: 30223892 DOI: 10.1186/s40168-018-0551-z] [Cited by in Crossref: 35] [Cited by in F6Publishing: 24] [Article Influence: 8.8] [Reference Citation Analysis]
60 Durand GA, Raoult D, Dubourg G. Antibiotic discovery: history, methods and perspectives. International Journal of Antimicrobial Agents 2019;53:371-82. [DOI: 10.1016/j.ijantimicag.2018.11.010] [Cited by in Crossref: 82] [Cited by in F6Publishing: 60] [Article Influence: 27.3] [Reference Citation Analysis]
61 Basson AR, Lam M, Cominelli F. Complementary and Alternative Medicine Strategies for Therapeutic Gut Microbiota Modulation in Inflammatory Bowel Disease and their Next-Generation Approaches. Gastroenterol Clin North Am. 2017;46:689-729. [PMID: 29173517 DOI: 10.1016/j.gtc.2017.08.002] [Cited by in Crossref: 14] [Cited by in F6Publishing: 14] [Article Influence: 3.5] [Reference Citation Analysis]
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