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Cited by in F6Publishing
For: Dey KK, Xie D, Stephens M. A new sequence logo plot to highlight enrichment and depletion. BMC Bioinformatics 2018;19:473. [PMID: 30526486 DOI: 10.1186/s12859-018-2489-3] [Cited by in Crossref: 22] [Cited by in F6Publishing: 16] [Article Influence: 5.5] [Reference Citation Analysis]
Number Citing Articles
1 Gajos M, Jasnovidova O, van Bömmel A, Freier S, Vingron M, Mayer A. Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Res 2021;49:4402-20. [PMID: 33788942 DOI: 10.1093/nar/gkab208] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
2 Al-Asadi H, Dey KK, Novembre J, Stephens M. Inference and visualization of DNA damage patterns using a grade of membership model. Bioinformatics 2019;35:1292-8. [PMID: 30192911 DOI: 10.1093/bioinformatics/bty779] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 2.5] [Reference Citation Analysis]
3 Ou J, Liu H, Nirala NK, Stukalov A, Acharya U, Green MR, Zhu LJ. dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data. PLoS One 2020;15:e0242030. [PMID: 33156866 DOI: 10.1371/journal.pone.0242030] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
4 Chaerkady R, Zhou Y, Delmar JA, Weng SHS, Wang J, Awasthi S, Sims D, Bowen MA, Yu W, Cazares LH, Sims GP, Hess S. Characterization of Citrullination Sites in Neutrophils and Mast Cells Activated by Ionomycin via Integration of Mass Spectrometry and Machine Learning. J Proteome Res 2021;20:3150-64. [PMID: 34008986 DOI: 10.1021/acs.jproteome.1c00028] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
5 Li F, Guo X, Xiang D, Pitt ME, Bainomugisa A, Coin LJ. Computational analysis and prediction of PE_PGRS proteins using machine learning. Computational and Structural Biotechnology Journal 2022. [DOI: 10.1016/j.csbj.2022.01.019] [Reference Citation Analysis]
6 Timmons PB, Hewage CM. ENNAACT is a novel tool which employs neural networks for anticancer activity classification for therapeutic peptides. Biomed Pharmacother 2021;133:111051. [PMID: 33254015 DOI: 10.1016/j.biopha.2020.111051] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 2.5] [Reference Citation Analysis]
7 Winkelman JT, Pukhrambam C, Vvedenskaya IO, Zhang Y, Taylor DM, Shah P, Ebright RH, Nickels BE. XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing. Mol Cell 2020;79:797-811.e8. [PMID: 32750314 DOI: 10.1016/j.molcel.2020.07.006] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
8 Wang W, Ren S, Lu Y, Chen X, Qu J, Ma X, Deng Q, Hu Z, Jin Y, Zhou Z, Ge W, Zhu Y, Yang N, Li Q, Pu J, Chen G, Ye C, Wang H, Zhao X, Liu Z, Zhu S. Inhibition of Syk promotes chemical reprogramming of fibroblasts via metabolic rewiring and H2 S production. EMBO J 2021;40:e106771. [PMID: 33909912 DOI: 10.15252/embj.2020106771] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
9 Zhang Z, Luo K, Zou Z, Qiu M, Tian J, Sieh L, Shi H, Zou Y, Wang G, Morrison J, Zhu AC, Qiao M, Li Z, Stephens M, He X, He C. Genetic analyses support the contribution of mRNA N6-methyladenosine (m6A) modification to human disease heritability. Nat Genet 2020;52:939-49. [PMID: 32601472 DOI: 10.1038/s41588-020-0644-z] [Cited by in Crossref: 32] [Cited by in F6Publishing: 35] [Article Influence: 16.0] [Reference Citation Analysis]
10 Pantier R, Chhatbar K, Quante T, Skourti-Stathaki K, Cholewa-Waclaw J, Alston G, Alexander-Howden B, Lee HY, Cook AG, Spruijt CG, Vermeulen M, Selfridge J, Bird A. SALL4 controls cell fate in response to DNA base composition. Mol Cell 2021;81:845-858.e8. [PMID: 33406384 DOI: 10.1016/j.molcel.2020.11.046] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
11 Lafontaine AT, Mayer BJ, Machida K. Dynalogo: an interactive sequence logo with dynamic thresholding of matched quantitative proteomic data. Bioinformatics 2020;36:1632-3. [PMID: 31609429 DOI: 10.1093/bioinformatics/btz766] [Reference Citation Analysis]
12 Griesemer D, Xue JR, Reilly SK, Ulirsch JC, Kukreja K, Davis JR, Kanai M, Yang DK, Butts JC, Guney MH, Luban J, Montgomery SB, Finucane HK, Novina CD, Tewhey R, Sabeti PC. Genome-wide functional screen of 3'UTR variants uncovers causal variants for human disease and evolution. Cell 2021;184:5247-5260.e19. [PMID: 34534445 DOI: 10.1016/j.cell.2021.08.025] [Reference Citation Analysis]
13 Chang HJ, Zúñiga A, Conejero I, Voyvodic PL, Gracy J, Fajardo-Ruiz E, Cohen-Gonsaud M, Cambray G, Pageaux GP, Meszaros M, Meunier L, Bonnet J. Programmable receptors enable bacterial biosensors to detect pathological biomarkers in clinical samples. Nat Commun 2021;12:5216. [PMID: 34471137 DOI: 10.1038/s41467-021-25538-y] [Reference Citation Analysis]
14 Foroushani AK, Chim B, Wong M, Rastegar A, Smith PT, Wang S, Barbian K, Martens C, Hafner M, Muljo SA. Posttranscriptional regulation of human endogenous retroviruses by RNA-binding motif protein 4, RBM4. Proc Natl Acad Sci U S A 2020;117:26520-30. [PMID: 33020268 DOI: 10.1073/pnas.2005237117] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
15 Ling G, Miller D, Nielsen R, Stern A. A Bayesian Framework for Inferring the Influence of Sequence Context on Point Mutations. Mol Biol Evol 2020;37:893-903. [PMID: 31651955 DOI: 10.1093/molbev/msz248] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
16 Mattenberger F, Latorre V, Tirosh O, Stern A, Geller R. Globally defining the effects of mutations in a picornavirus capsid. Elife 2021;10:e64256. [PMID: 33432927 DOI: 10.7554/eLife.64256] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
17 Pratt H, Weng Z. LogoJS: a Javascript package for creating sequence logos and embedding them in web applications. Bioinformatics 2020;36:3573-5. [PMID: 32181813 DOI: 10.1093/bioinformatics/btaa192] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]