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For: Ehrlich GD, Hiller NL, Hu FZ. What makes pathogens pathogenic. Genome Biol 2008;9:225. [PMID: 18598378 DOI: 10.1186/gb-2008-9-6-225] [Cited by in Crossref: 42] [Cited by in F6Publishing: 36] [Article Influence: 3.0] [Reference Citation Analysis]
Number Citing Articles
1 Reno ML, Held NL, Fields CJ, Burke PV, Whitaker RJ. Biogeography of the Sulfolobus islandicus pan-genome. Proc Natl Acad Sci U S A 2009;106:8605-10. [PMID: 19435847 DOI: 10.1073/pnas.0808945106] [Cited by in Crossref: 166] [Cited by in F6Publishing: 155] [Article Influence: 12.8] [Reference Citation Analysis]
2 Nakjang S, Ndeh DA, Wipat A, Bolam DN, Hirt RP. A novel extracellular metallopeptidase domain shared by animal host-associated mutualistic and pathogenic microbes. PLoS One 2012;7:e30287. [PMID: 22299034 DOI: 10.1371/journal.pone.0030287] [Cited by in Crossref: 63] [Cited by in F6Publishing: 53] [Article Influence: 6.3] [Reference Citation Analysis]
3 Eutsey RA, Hiller NL, Earl JP, Janto BA, Dahlgren ME, Ahmed A, Powell E, Schultz MP, Gilsdorf JR, Zhang L, Smith A, Murphy TF, Sethi S, Shen K, Post JC, Hu FZ, Ehrlich GD. Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates. BMC Genomics 2013;14:484. [PMID: 23865594 DOI: 10.1186/1471-2164-14-484] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 1.4] [Reference Citation Analysis]
4 Basili M, Quero GM, Giovannelli D, Manini E, Vignaroli C, Avio CG, De Marco R, Luna GM. Major Role of Surrounding Environment in Shaping Biofilm Community Composition on Marine Plastic Debris. Front Mar Sci 2020;7:262. [DOI: 10.3389/fmars.2020.00262] [Cited by in Crossref: 15] [Cited by in F6Publishing: 6] [Article Influence: 7.5] [Reference Citation Analysis]
5 Leid JG, Cope E. Population level virulence in polymicrobial communities associated with chronic disease. Front Biol 2011;6:435-45. [DOI: 10.1007/s11515-011-1153-3] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 0.4] [Reference Citation Analysis]
6 Gabaldón T, Carreté L. The birth of a deadly yeast: tracing the evolutionary emergence of virulence traits in Candida glabrata. FEMS Yeast Res 2016;16:fov110. [PMID: 26684722 DOI: 10.1093/femsyr/fov110] [Cited by in Crossref: 48] [Cited by in F6Publishing: 41] [Article Influence: 6.9] [Reference Citation Analysis]
7 Wysok B, Sołtysiuk M, Stenzel T. Wildlife Waterfowl as a Source of Pathogenic Campylobacter Strains. Pathogens 2022;11:113. [DOI: 10.3390/pathogens11020113] [Reference Citation Analysis]
8 Barbosa E, Röttger R, Hauschild AC, de Castro Soares S, Böcker S, Azevedo V, Baumbach J. LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis. J Integr Bioinform 2017;14:/j/jib. [PMID: 28678736 DOI: 10.1515/jib-2017-0010] [Reference Citation Analysis]
9 Baumdicker F, Hess WR, Pfaffelhuber P. The infinitely many genes model for the distributed genome of bacteria. Genome Biol Evol 2012;4:443-56. [PMID: 22357598 DOI: 10.1093/gbe/evs016] [Cited by in Crossref: 81] [Cited by in F6Publishing: 62] [Article Influence: 8.1] [Reference Citation Analysis]
10 Klein J, Münch R, Biegler I, Haddad I, Retter I, Jahn D. Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR). Nucleic Acids Res 2009;37:D494-8. [PMID: 18854354 DOI: 10.1093/nar/gkn674] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.3] [Reference Citation Analysis]
11 Hammond JA, Gordon EA, Socarras KM, Chang Mell J, Ehrlich GD. Beyond the pan-genome: current perspectives on the functional and practical outcomes of the distributed genome hypothesis. Biochem Soc Trans 2020;48:2437-55. [PMID: 33245329 DOI: 10.1042/BST20190713] [Reference Citation Analysis]
12 Moran GP, Coleman DC, Sullivan DJ. Comparative genomics and the evolution of pathogenicity in human pathogenic fungi. Eukaryot Cell 2011;10:34-42. [PMID: 21076011 DOI: 10.1128/EC.00242-10] [Cited by in Crossref: 73] [Cited by in F6Publishing: 41] [Article Influence: 6.1] [Reference Citation Analysis]
13 Hayes BM, Radkov AD, Yarza F, Flores S, Kim J, Zhao Z, Lexa KW, Marnin L, Biboy J, Bowcut V, Vollmer W, Pedra JHF, Chou S. Ticks Resist Skin Commensals with Immune Factor of Bacterial Origin. Cell 2020;183:1562-1571.e12. [PMID: 33306955 DOI: 10.1016/j.cell.2020.10.042] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 9.0] [Reference Citation Analysis]
14 Hall DC Jr, Król JE, Cahill JP, Ji HF, Ehrlich GD. The Development of a Pipeline for the Identification and Validation of Small-Molecule RelA Inhibitors for Use as Anti-Biofilm Drugs. Microorganisms 2020;8:E1310. [PMID: 32872142 DOI: 10.3390/microorganisms8091310] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
15 Kahlke T, Goesmann A, Hjerde E, Willassen NP, Haugen P. Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation. BMC Genomics 2012;13:179. [PMID: 22574681 DOI: 10.1186/1471-2164-13-179] [Cited by in Crossref: 18] [Cited by in F6Publishing: 13] [Article Influence: 1.8] [Reference Citation Analysis]
16 Merikanto I, Laakso JT, Kaitala V. Invasion ability and disease dynamics of environmentally growing opportunistic pathogens under outside-host competition. PLoS One 2014;9:e113436. [PMID: 25415341 DOI: 10.1371/journal.pone.0113436] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
17 Palmer MP, Altman DT, Altman GT, Sewecke JJ, Saltarski C, Nistico L, Melton-Kreft R, Hu FZ, Ehrlich GD. Bacterial Identification and Visualization of Bacterial Biofilms Adjacent to Fracture Sites After Internal Fixation. Genet Test Mol Biomarkers 2022;26:70-80. [PMID: 35225678 DOI: 10.1089/gtmb.2019.0225] [Reference Citation Analysis]
18 Rath CM, Janto B, Earl J, Ahmed A, Hu FZ, Hiller L, Dahlgren M, Kreft R, Yu F, Wolff JJ, Kweon HK, Christiansen MA, Håkansson K, Williams RM, Ehrlich GD, Sherman DH. Meta-omic characterization of the marine invertebrate microbial consortium that produces the chemotherapeutic natural product ET-743. ACS Chem Biol 2011;6:1244-56. [PMID: 21875091 DOI: 10.1021/cb200244t] [Cited by in Crossref: 149] [Cited by in F6Publishing: 114] [Article Influence: 13.5] [Reference Citation Analysis]
19 Hiller NL, Ahmed A, Powell E, Martin DP, Eutsey R, Earl J, Janto B, Boissy RJ, Hogg J, Barbadora K, Sampath R, Lonergan S, Post JC, Hu FZ, Ehrlich GD. Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection. PLoS Pathog 2010;6:e1001108. [PMID: 20862314 DOI: 10.1371/journal.ppat.1001108] [Cited by in Crossref: 99] [Cited by in F6Publishing: 101] [Article Influence: 8.3] [Reference Citation Analysis]
20 Niu C, Yu D, Wang Y, Ren H, Jin Y, Zhou W, Li B, Cheng Y, Yue J, Gao Z, Liang L. Common and pathogen-specific virulence factors are different in function and structure. Virulence 2013;4:473-82. [PMID: 23863604 DOI: 10.4161/viru.25730] [Cited by in Crossref: 25] [Cited by in F6Publishing: 20] [Article Influence: 2.8] [Reference Citation Analysis]
21 Cope EK, Goldstein-Daruech N, Kofonow JM, Christensen L, McDermott B, Monroy F, Palmer JN, Chiu AG, Shirtliff ME, Cohen NA, Leid JG. Regulation of virulence gene expression resulting from Streptococcus pneumoniae and nontypeable Haemophilus influenzae interactions in chronic disease. PLoS One 2011;6:e28523. [PMID: 22162775 DOI: 10.1371/journal.pone.0028523] [Cited by in Crossref: 29] [Cited by in F6Publishing: 31] [Article Influence: 2.6] [Reference Citation Analysis]
22 Peterson EJ, Kireev D, Moon AF, Midon M, Janzen WP, Pingoud A, Pedersen LC, Singleton SF. Inhibitors of Streptococcus pneumoniae surface endonuclease EndA discovered by high-throughput screening using a PicoGreen fluorescence assay. J Biomol Screen 2013;18:247-57. [PMID: 23015019 DOI: 10.1177/1087057112461153] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 1.0] [Reference Citation Analysis]
23 Harro JM, Peters BM, O'May GA, Archer N, Kerns P, Prabhakara R, Shirtliff ME. Vaccine development in Staphylococcus aureus: taking the biofilm phenotype into consideration. FEMS Immunol Med Microbiol 2010;59:306-23. [PMID: 20602638 DOI: 10.1111/j.1574-695X.2010.00708.x] [Cited by in Crossref: 80] [Cited by in F6Publishing: 33] [Article Influence: 6.7] [Reference Citation Analysis]
24 Ehrlich GD, Ahmed A, Earl J, Hiller NL, Costerton JW, Stoodley P, Post JC, DeMeo P, Hu FZ. The distributed genome hypothesis as a rubric for understanding evolution in situ during chronic bacterial biofilm infectious processes. FEMS Immunol Med Microbiol. 2010;59:269-279. [PMID: 20618850 DOI: 10.1111/j.1574-695x.2010.00704.x] [Cited by in Crossref: 64] [Cited by in F6Publishing: 35] [Article Influence: 5.3] [Reference Citation Analysis]
25 Chamberlain CA, Rubio VY, Garrett TJ. Strain-Level Differentiation of Bacteria by Paper Spray Ionization Mass Spectrometry. Anal Chem 2019;91:4964-8. [PMID: 30888152 DOI: 10.1021/acs.analchem.9b00330] [Cited by in Crossref: 12] [Cited by in F6Publishing: 9] [Article Influence: 4.0] [Reference Citation Analysis]
26 Socarras KM, Earl JP, Krol JE, Bhat A, Pabilonia M, Harrison MH, Lang SP, Sen B, Ahmed A, Hester M, Mell JC, Vandegrift K, Ehrlich GD. Species-Level Profiling of Ixodes pacificus Bacterial Microbiomes Reveals High Variability Across Short Spatial Scales at Different Taxonomic Resolutions. Genet Test Mol Biomarkers 2021;25:551-62. [PMID: 34406842 DOI: 10.1089/gtmb.2021.0088] [Reference Citation Analysis]
27 Hamelin RC. Contributions of genomics to forest pathology. Canadian Journal of Plant Pathology 2012;34:20-8. [DOI: 10.1080/07060661.2012.665389] [Cited by in Crossref: 6] [Cited by in F6Publishing: 2] [Article Influence: 0.6] [Reference Citation Analysis]
28 Balashov SV, Mordechai E, Adelson ME, Gygax SE. Identification, quantification and subtyping of Gardnerella vaginalis in noncultured clinical vaginal samples by quantitative PCR. J Med Microbiol 2014;63:162-75. [PMID: 24200640 DOI: 10.1099/jmm.0.066407-0] [Cited by in Crossref: 68] [Cited by in F6Publishing: 60] [Article Influence: 7.6] [Reference Citation Analysis]
29 Roy S, Thompson D. Evolution of regulatory networks in Candida glabrata: learning to live with the human host. FEMS Yeast Res 2015;15:fov087. [PMID: 26449820 DOI: 10.1093/femsyr/fov087] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
30 Soldati T, Cardenal-Muñoz E. A brief historical and evolutionary perspective on the origin of cellular microbiology research. Cell Microbiol 2019;21:e13083. [PMID: 31290267 DOI: 10.1111/cmi.13083] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
31 Nagi M, Tanabe K, Nakayama H, Ueno K, Yamagoe S, Umeyama T, Ohno H, Miyazaki Y. Iron-depletion promotes mitophagy to maintain mitochondrial integrity in pathogenic yeast Candida glabrata. Autophagy 2016;12:1259-71. [PMID: 27347716 DOI: 10.1080/15548627.2016.1183080] [Cited by in Crossref: 21] [Cited by in F6Publishing: 19] [Article Influence: 3.5] [Reference Citation Analysis]
32 Klug TE, Greve T, Andersen C, Hahn P, Danstrup C, Petersen NK, Ninn-Pedersen M, Mikkelsen S, Pauli S, Fuglsang S, Døssing H, Christensen AL, Rusan M, Kjeldsen A. Microbiology of parapharyngeal abscesses in adults: in search of the significant pathogens. Eur J Clin Microbiol Infect Dis 2021;40:1461-70. [PMID: 33566204 DOI: 10.1007/s10096-021-04180-y] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
33 Roetzer A, Gabaldón T, Schüller C. From Saccharomyces cerevisiae to Candida glabratain a few easy steps: important adaptations for an opportunistic pathogen. FEMS Microbiol Lett 2011;314:1-9. [PMID: 20846362 DOI: 10.1111/j.1574-6968.2010.02102.x] [Cited by in Crossref: 89] [Cited by in F6Publishing: 82] [Article Influence: 7.4] [Reference Citation Analysis]
34 Zapalski MK. Is absence of proof a proof of absence? Comments on commensalism. Palaeogeography, Palaeoclimatology, Palaeoecology 2011;302:484-8. [DOI: 10.1016/j.palaeo.2011.01.013] [Cited by in Crossref: 55] [Cited by in F6Publishing: 22] [Article Influence: 5.0] [Reference Citation Analysis]
35 Zámocký M, Furtmüller PG, Obinger C. Two distinct groups of fungal catalase/peroxidases. Biochem Soc Trans 2009;37:772-7. [PMID: 19614592 DOI: 10.1042/BST0370772] [Cited by in Crossref: 31] [Cited by in F6Publishing: 10] [Article Influence: 2.4] [Reference Citation Analysis]
36 Ahmed A, Earl J, Retchless A, Hillier SL, Rabe LK, Cherpes TL, Powell E, Janto B, Eutsey R, Hiller NL, Boissy R, Dahlgren ME, Hall BG, Costerton JW, Post JC, Hu FZ, Ehrlich GD. Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars. J Bacteriol 2012;194:3922-37. [PMID: 22609915 DOI: 10.1128/JB.00056-12] [Cited by in Crossref: 115] [Cited by in F6Publishing: 71] [Article Influence: 11.5] [Reference Citation Analysis]
37 Vetor R, Murray CK, Mende K, Melton-Kreft R, Akers KS, Wenke J, Spirk T, Guymon C, Zera W, Beckius ML, Schnaubelt ER, Ehrlich G, Vento TJ. The use of PCR/Electrospray Ionization-Time-of-Flight-Mass Spectrometry (PCR/ESI-TOF-MS) to detect bacterial and fungal colonization in healthy military service members. BMC Infect Dis 2016;16:338. [PMID: 27448413 DOI: 10.1186/s12879-016-1651-7] [Cited by in Crossref: 9] [Cited by in F6Publishing: 10] [Article Influence: 1.5] [Reference Citation Analysis]
38 Byington CL, Hulten KG, Ampofo K, Sheng X, Pavia AT, Blaschke AJ, Pettigrew M, Korgenski K, Daly J, Mason EO. Molecular epidemiology of pediatric pneumococcal empyema from 2001 to 2007 in Utah. J Clin Microbiol 2010;48:520-5. [PMID: 20018815 DOI: 10.1128/JCM.01200-09] [Cited by in Crossref: 73] [Cited by in F6Publishing: 27] [Article Influence: 5.6] [Reference Citation Analysis]
39 Janto BA, Hiller NL, Eutsey RA, Dahlgren ME, Earl JP, Powell E, Ahmed A, Hu FZ, Ehrlich GD. Development and validation of an Haemophilus influenzae supragenome hybridization (SGH) array for transcriptomic analyses. PLoS One 2014;9:e105493. [PMID: 25290153 DOI: 10.1371/journal.pone.0105493] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
40 Saha MS, Pal S, Sarkar I, Roy A, Das Mohapatra PK, Sen A. Comparative genomics of Mycobacterium reveals evolutionary trends of M. avium complex. Genomics 2019;111:426-35. [PMID: 29501678 DOI: 10.1016/j.ygeno.2018.02.019] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.8] [Reference Citation Analysis]