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For: Ji W, Wright MB, Cai L, Flament A, Lindpaintner K. Efficacy of SSH PCR in isolating differentially expressed genes. BMC Genomics. 2002;3:12. [PMID: 12033988 DOI: 10.1186/1471-2164-3-12] [Cited by in Crossref: 66] [Cited by in F6Publishing: 55] [Article Influence: 3.3] [Reference Citation Analysis]
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2 Kortner TM, Rocha E, Silva P, Castro LFC, Arukwe A. Genomic approach in evaluating the role of androgens on the growth of Atlantic cod (Gadus morhua) previtellogenic oocytes. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 2008;3:205-18. [DOI: 10.1016/j.cbd.2008.04.001] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 0.8] [Reference Citation Analysis]
3 Ghorbel MT, Sharman G, Hindmarch C, Becker KG, Barrett T, Murphy D. Microarray screening of suppression subtractive hybridization-PCR cDNA libraries identifies novel RNAs regulated by dehydration in the rat supraoptic nucleus. Physiol Genomics 2006;24:163-72. [PMID: 16249312 DOI: 10.1152/physiolgenomics.00229.2005] [Cited by in Crossref: 18] [Cited by in F6Publishing: 17] [Article Influence: 1.1] [Reference Citation Analysis]
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7 Chen T, Cheng Y, Cheng J, Ko F. Assessing the effects of polychlorinated biphenyls (Aroclor 1254) on a scleractinian coral (Stylophora pistillata) at organism, physiological, and molecular levels. Ecotoxicology and Environmental Safety 2012;75:207-12. [DOI: 10.1016/j.ecoenv.2011.09.001] [Cited by in Crossref: 14] [Cited by in F6Publishing: 11] [Article Influence: 1.4] [Reference Citation Analysis]
8 Guo J, Cheng J, Ji D, Zhao LF, Wang JJ, Liu Y, Huang YP. Screening and cloning of target genes transactivated by hepatitis C virus p7 protein. Shijie Huaren Xiaohua Zazhi 2004; 12(11): 2590-2593 [DOI: 10.11569/wcjd.v12.i11.2590] [Cited by in CrossRef: 1] [Article Influence: 0.1] [Reference Citation Analysis]
9 Coyle D. Spinal cord transcriptional profile analysis reveals protein trafficking and RNA processing as prominent processes regulated by tactile allodynia. Neuroscience 2007;144:144-56. [DOI: 10.1016/j.neuroscience.2006.08.081] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 0.7] [Reference Citation Analysis]
10 Namasivayam P, Hanke D. Identification of differentially expressed sequences in pre-embryogenic tissue of oilseed rape by suppression subtractive hybridisation (SSH). Plant Cell Tiss Organ Cult 2006;86:417-21. [DOI: 10.1007/s11240-006-9141-z] [Cited by in Crossref: 10] [Cited by in F6Publishing: 5] [Article Influence: 0.6] [Reference Citation Analysis]
11 Puckette M, Peal L, Steele J, Tang Y, Mahalingam R. Ozone responsive genes in Medicago truncatula: Analysis by suppression subtraction hybridization. Journal of Plant Physiology 2009;166:1284-95. [DOI: 10.1016/j.jplph.2009.01.009] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 0.7] [Reference Citation Analysis]
12 Garcia-pedrajas MD, Gold SE. Fungal dimorphism regulated gene expression in Ustilago maydis: II. Filament down-regulated genes. Mol Plant Pathol 2004;5:295-307. [DOI: 10.1111/j.1364-3703.2004.00233.x] [Cited by in Crossref: 14] [Cited by in F6Publishing: 12] [Article Influence: 0.8] [Reference Citation Analysis]
13 Wang J, Wei Y, Li X, Xu M, Dai J. Identification of differentially expressed genes from contaminant and thermal exposed goldfish Carassius auratus in Gaobeidian Lake in Beijing, China. Ecotoxicology 2007;16:525-32. [PMID: 17624611 DOI: 10.1007/s10646-007-0159-8] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 0.5] [Reference Citation Analysis]
14 Sanchez S, Hourdez S, Lallier FH. Identification of proteins involved in the functioning of Riftia pachyptila symbiosis by Subtractive Suppression Hybridization. BMC Genomics 2007;8:337. [PMID: 17892591 DOI: 10.1186/1471-2164-8-337] [Cited by in Crossref: 18] [Cited by in F6Publishing: 16] [Article Influence: 1.2] [Reference Citation Analysis]
15 Schroeyers K, Chaparro C, Goormachtig S, Holsters M. Nodulation-enhanced sequences from the water stress-tolerant tropical legume Sesbania rostrata. Plant Science 2004;167:207-16. [DOI: 10.1016/j.plantsci.2004.02.027] [Cited by in Crossref: 9] [Cited by in F6Publishing: 4] [Article Influence: 0.5] [Reference Citation Analysis]
16 Fan H, Zhao Z, Cheng Y, Cui H, Qiao F, Wang L, Hu J, Wu H, Song W. Genome-wide profiling of DNA methylation reveals preferred sequences of DNMTs in hepatocellular carcinoma cells. Tumour Biol 2016;37:877-85. [PMID: 26254611 DOI: 10.1007/s13277-015-3202-z] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 0.9] [Reference Citation Analysis]
17 Lang M, Schlechtweg M, Kellermeier S, Brenmoehl J, Falk W, Schölmerich J, Herfarth H, Rogler G, Hausmann M. Gene expression profiles of mucosal fibroblasts from strictured and nonstrictured areas of patients with Crohn's disease. Inflamm Bowel Dis 2009;15:212-23. [PMID: 18839425 DOI: 10.1002/ibd.20735] [Cited by in Crossref: 12] [Cited by in F6Publishing: 14] [Article Influence: 0.9] [Reference Citation Analysis]
18 Roelofs D, Mariën J, van Straalen NM. Differential gene expression profiles associated with heavy metal tolerance in the soil insect Orchesella cincta. Insect Biochemistry and Molecular Biology 2007;37:287-95. [DOI: 10.1016/j.ibmb.2006.11.013] [Cited by in Crossref: 38] [Cited by in F6Publishing: 38] [Article Influence: 2.5] [Reference Citation Analysis]
19 Huan J, Wan K, Liu Y, Dong W, Wang G. Removing PCR for the elimination of undesired DNA fragments cycle by cycle. Sci Rep 2013;3:2303. [PMID: 23892515 DOI: 10.1038/srep02303] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
20 Liu YB, Wei ZX, Li L, Li HS, Chen H, Li XW. Construction and analysis of SSH cDNA library of human vascular endothelial cells related to gastrocarcinoma. World J Gastroenterol 2003; 9(11): 2419-2423 [PMID: 14606068 DOI: 10.3748/wjg.v9.i11.2419] [Cited by in CrossRef: 1] [Article Influence: 0.1] [Reference Citation Analysis]
21 Castillo NI, Fierro F, Gutiérrez S, Martín JF. Genome-wide analysis of differentially expressed genes from Penicillium chrysogenum grown with a repressing or a non-repressing carbon source. Curr Genet 2006;49:85-96. [DOI: 10.1007/s00294-005-0029-y] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 0.6] [Reference Citation Analysis]
22 Yamada T. Genetic dissection of marbling trait through integration of mapping and expression profiling: Genetic Dissection of Marbling. Animal Science Journal 2014;85:349-55. [DOI: 10.1111/asj.12179] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
23 Huang X, Li Y, Niu Q, Zhang K. Suppression Subtractive Hybridization (SSH) and its modifications in microbiological research. Appl Microbiol Biotechnol 2007;76:753-60. [DOI: 10.1007/s00253-007-1076-8] [Cited by in Crossref: 31] [Cited by in F6Publishing: 29] [Article Influence: 2.1] [Reference Citation Analysis]
24 N/A. N/A. Shijie Huaren Xiaohua Zazhi 2003; 11(4): 456-458 [DOI: 10.11569/wcjd.v11.i4.456] [Cited by in F6Publishing: 6] [Reference Citation Analysis]
25 Roelofs D, Janssens TKS, Timmermans MJTN, Nota B, Mariën J, Bochdanovits Z, Ylstra B, Van Straalen NM. Adaptive differences in gene expression associated with heavy metal tolerance in the soil arthropod Orchesella cincta. Molecular Ecology 2009;18:3227-39. [DOI: 10.1111/j.1365-294x.2009.04261.x] [Cited by in Crossref: 61] [Cited by in F6Publishing: 17] [Article Influence: 4.7] [Reference Citation Analysis]
26 De Long SK, Kinney KA, Kirisits MJ. Prokaryotic suppression subtractive hybridization PCR cDNA subtraction, a targeted method to identify differentially expressed genes. Appl Environ Microbiol 2008;74:225-32. [PMID: 17993561 DOI: 10.1128/AEM.01647-07] [Cited by in Crossref: 11] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
27 Li Y, Zhang X, Xu D, Zhuang Z, Ye N. Differential gene expression in Ulva prolifera under low light and low temperature conditions. Curr Genet 2012;58:235-44. [PMID: 22825218 DOI: 10.1007/s00294-012-0380-8] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 0.7] [Reference Citation Analysis]
28 Okawa T, Kurio Y, Morimoto M, Hayashi T, Nakagawa T, Sasaki N, Okuda M, Mizuno T. Calreticulin expression in neoplastic versus normal dog mammary glands: A cDNA subtraction-based study. Research in Veterinary Science 2012;92:80-91. [DOI: 10.1016/j.rvsc.2010.10.028] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
29 Ellers J, Mariën J, Driessen G, van Straalen NM. Temperature-induced gene expression associated with different thermal reaction norms for growth rate. J Exp Zool 2008;310B:137-47. [DOI: 10.1002/jez.b.21194] [Cited by in Crossref: 24] [Cited by in F6Publishing: 24] [Article Influence: 1.7] [Reference Citation Analysis]
30 Daldoul S, Guillaumie S, Reustle GM, Krczal G, Ghorbel A, Delrot S, Mliki A, Höfer MU. Isolation and expression analysis of salt induced genes from contrasting grapevine (Vitis vinifera L.) cultivars. Plant Sci 2010;179:489-98. [PMID: 21802607 DOI: 10.1016/j.plantsci.2010.07.017] [Cited by in Crossref: 28] [Cited by in F6Publishing: 17] [Article Influence: 2.3] [Reference Citation Analysis]
31 Zheng S, Qiu X, Chen B, Yu X, Lin K, Bian M, Liu Z, Huang H, Yu W. Toxicity evaluation of benzo[a]pyrene on the polychaete Perinereis nuntia using subtractive cDNA libraries. Aquatic Toxicology 2011;105:279-91. [DOI: 10.1016/j.aquatox.2011.06.018] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 1.2] [Reference Citation Analysis]
32 Sánchez Timm E, Hidalgo Pardo L, Pacheco Coello R, Chávez Navarrete T, Navarrete Villegas O, Santos Ordóñez E. Identification of Differentially-Expressed Genes in Response to Mycosphaerella fijiensis in the Resistant Musa Accession 'Calcutta-4' Using Suppression Subtractive Hybridization. PLoS One 2016;11:e0160083. [PMID: 27487237 DOI: 10.1371/journal.pone.0160083] [Cited by in Crossref: 14] [Cited by in F6Publishing: 8] [Article Influence: 2.3] [Reference Citation Analysis]
33 Mitra RM, Long SR. Plant and bacterial symbiotic mutants define three transcriptionally distinct stages in the development of the Medicago truncatula/Sinorhizobium meliloti symbiosis. Plant Physiol 2004;134:595-604. [PMID: 14739349 DOI: 10.1104/pp.103.031518] [Cited by in Crossref: 89] [Cited by in F6Publishing: 61] [Article Influence: 4.9] [Reference Citation Analysis]
34 Galbraith EA, Antonopoulos DA, White BA. Application of Suppressive Subtractive Hybridization to Uncover the Metagenomic Diversity of Environmental Samples. In: Martin CC, Martin CC, editors. Environmental Genomics. Totowa: Humana Press; 2008. pp. 295-334. [DOI: 10.1007/978-1-59745-548-0_16] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.2] [Reference Citation Analysis]
35 Xu Y, Yu W, Feng X, Xie H, Xiong Y. Molecular characterization, expression patterns, and polymorphism of a differentially expressed porcine gene (PYGM) isolated by suppression subtractive hybridization and two-dimensional gel electrophoresis analysis. DNA Cell Biol 2012;31:98-105. [PMID: 22023431 DOI: 10.1089/dna.2011.1295] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.1] [Reference Citation Analysis]
36 Shekhar M, Gomathi A, Dubey N, Vinaya Kumar K, Vijayan K. Effect of immune gene silencing in WSSV infected tiger shrimp Penaeus monodon. Fish & Shellfish Immunology 2017;70:252-9. [DOI: 10.1016/j.fsi.2017.09.019] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 0.8] [Reference Citation Analysis]
37 Keith BK, Kalinina EB, Dyer WE. Differentially expressed genes in dicamba-resistant and dicamba-susceptible biotypes: Dicamba-resistant kochia. Weed Biology and Management 2011;11:224-34. [DOI: 10.1111/j.1445-6664.2011.00424.x] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
38 Luo D, Hu W, Chen S, Xiao Y, Sun Y, Zhu Z. Identification of Differentially Expressed Genes Between Cloned and Zygote-Developing Zebrafish (Danio rerio) Embryos at the Dome Stage Using Suppression Subtractive Hybridization1. Biology of Reproduction 2009;80:674-84. [DOI: 10.1095/biolreprod.108.074203] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 1.2] [Reference Citation Analysis]
39 Rishi AS, Munir S, Kapur V, Nelson ND, Goyal A. Identification and analysis of safener-inducible expressed sequence tags in Populus using a cDNA microarray. Planta 2004;220:296-306. [PMID: 15378367 DOI: 10.1007/s00425-004-1356-9] [Cited by in Crossref: 22] [Cited by in F6Publishing: 22] [Article Influence: 1.2] [Reference Citation Analysis]
40 Volz DC, Bencic DC, Hinton DE, Law JM, Kullman SW. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) induces organ- specific differential gene expression in male Japanese medaka (Oryzias latipes). Toxicol Sci 2005;85:572-84. [PMID: 15703262 DOI: 10.1093/toxsci/kfi109] [Cited by in Crossref: 50] [Cited by in F6Publishing: 47] [Article Influence: 2.9] [Reference Citation Analysis]
41 Dai ZM, Li R, Dai L, Yang JS, Chen S, Zeng QG, Yang F, Yang WJ. Determination in oocytes of the reproductive modes for the brine shrimp Artemia parthenogenetica. Biosci Rep 2011;31:17-30. [PMID: 20353401 DOI: 10.1042/BSR20090141] [Cited by in Crossref: 16] [Cited by in F6Publishing: 5] [Article Influence: 1.5] [Reference Citation Analysis]
42 Du JJ, Dou KF, Peng SY, Xiao HS, Wang WZ, Guan WX, Wang ZH, Gao ZQ, Liu YB. cDNA suppression subtraction library for screening down-regulated genes in gastric carcinoma. World J Gastroenterol 2003; 9(7): 1439-1443 [PMID: 12854137 DOI: 10.3748/wjg.v9.i7.1439] [Cited by in CrossRef: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.1] [Reference Citation Analysis]
43 Forberg T, Arukwe A, Vadstein O. Two strategies to unravel gene expression responses of host-microbe interactions in cod (Gadus morhua) larvae: Gene-expression responses to bacteria in cod larvae. Aquaculture Research 2011;42:664-76. [DOI: 10.1111/j.1365-2109.2010.02708.x] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
44 Mortensen AS, Arukwe A. Targeted salmon gene array (SalArray): a toxicogenomic tool for gene expression profiling of interactions between estrogen and aryl hydrocarbon receptor signalling pathways. Chem Res Toxicol 2007;20:474-88. [PMID: 17291011 DOI: 10.1021/tx6002672] [Cited by in Crossref: 34] [Cited by in F6Publishing: 31] [Article Influence: 2.3] [Reference Citation Analysis]
45 Lathia KB, Yan Z, Clapshaw PA. Role of normalization in the elimination of abundant myelin sequences in spinal cord cDNA libraries produced by suppression subtractive hybridization. Cell Mol Neurobiol 2009;29:1153-9. [PMID: 19430900 DOI: 10.1007/s10571-009-9408-0] [Reference Citation Analysis]
46 Mondego JMC, Guerreiro-filho O, Bengtson MH, Drummond RD, Felix JDM, Duarte MP, Ramiro D, Maluf MP, Sogayar MC, Menossi M. Isolation and characterization of Coffea genes induced during coffee leaf miner (Leucoptera coffeella) infestation. Plant Science 2005;169:351-60. [DOI: 10.1016/j.plantsci.2005.03.020] [Cited by in Crossref: 15] [Cited by in F6Publishing: 6] [Article Influence: 0.9] [Reference Citation Analysis]
47 Ganova-Raeva L, Zhang X, Cao F, Fields H, Khudyakov Y. Primer Extension Enrichment Reaction (PEER): a new subtraction method for identification of genetic differences between biological specimens. Nucleic Acids Res 2006;34:e76. [PMID: 16790564 DOI: 10.1093/nar/gkl391] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.1] [Reference Citation Analysis]
48 Singh M, Burson BL, Finlayson SA. Isolation of candidate genes for apomictic development in buffelgrass (Pennisetum ciliare). Plant Mol Biol 2007;64:673-82. [DOI: 10.1007/s11103-007-9188-1] [Cited by in Crossref: 28] [Cited by in F6Publishing: 22] [Article Influence: 1.9] [Reference Citation Analysis]
49 Lan J, Lei MG, Zhang YB, Wang JH, Feng XT, Xu DQ, Gui JF, Xiong YZ. Characterization of the porcine differentially expressed PDK4 gene and association with meat quality. Mol Biol Rep 2009;36:2003-10. [PMID: 19051057 DOI: 10.1007/s11033-008-9411-4] [Cited by in Crossref: 27] [Cited by in F6Publishing: 26] [Article Influence: 1.9] [Reference Citation Analysis]
50 Saban MR, Hellmich HL, Simpson C, Davis CA, Lang ML, Ihnat MA, O'Donnell MA, Wu XR, Saban R. Repeated BCG treatment of mouse bladder selectively stimulates small GTPases and HLA antigens and inhibits single-spanning uroplakins. BMC Cancer 2007;7:204. [PMID: 17980030 DOI: 10.1186/1471-2407-7-204] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 0.7] [Reference Citation Analysis]
51 Venkatarama T, Lai F, Luo X, Zhou Y, Newman K, King ML. Repression of zygotic gene expression in the Xenopus germline. Development 2010;137:651-60. [PMID: 20110330 DOI: 10.1242/dev.038554] [Cited by in Crossref: 51] [Cited by in F6Publishing: 47] [Article Influence: 4.3] [Reference Citation Analysis]
52 Nelson BR, Sadhu M, Kasemeier JC, Anderson LW, Lefcort F. Identification of genes regulating sensory neuron genesis and differentiation in the avian dorsal root ganglia. Dev Dyn 2004;229:618-29. [PMID: 14991717 DOI: 10.1002/dvdy.20030] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 0.4] [Reference Citation Analysis]
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57 Hillmann A, Dunne E, Kenny D. cDNA Amplification by SMART-PCR and Suppression Subtractive Hybridization (SSH)-PCR. In: Bugert P, editor. DNA and RNA Profiling in Human Blood. Totowa: Humana Press; 2009. pp. 223-43. [DOI: 10.1007/978-1-59745-553-4_15] [Cited by in Crossref: 19] [Cited by in F6Publishing: 16] [Article Influence: 1.5] [Reference Citation Analysis]
58 Mühlenbock P, Szechynska-Hebda M, Plaszczyca M, Baudo M, Mateo A, Mullineaux PM, Parker JE, Karpinska B, Karpinski S. Chloroplast signaling and LESION SIMULATING DISEASE1 regulate crosstalk between light acclimation and immunity in Arabidopsis. Plant Cell 2008;20:2339-56. [PMID: 18790826 DOI: 10.1105/tpc.108.059618] [Cited by in Crossref: 227] [Cited by in F6Publishing: 210] [Article Influence: 16.2] [Reference Citation Analysis]
59 Reyes A, Salazar M, Granja C. Temperature modifies gene expression in subcuticular epithelial cells of white spot syndrome virus-infected Litopenaeus vannamei. Developmental & Comparative Immunology 2007;31:23-9. [DOI: 10.1016/j.dci.2006.05.003] [Cited by in Crossref: 28] [Cited by in F6Publishing: 22] [Article Influence: 1.9] [Reference Citation Analysis]